Wall clock time and date at job start Tue Mar 31 2020 18:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35244 * 126.07048 * 2 1 4 4 C 1.40401 * 107.86868 * 179.97438 * 3 2 1 5 5 N 1.40193 * 125.97600 * 179.97438 * 4 3 2 6 6 C 1.34777 * 119.99728 * 0.02562 * 5 4 3 7 7 O 1.21589 * 119.99982 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99754 * 179.97438 * 6 5 4 9 9 C 1.46509 * 119.99703 * 179.97438 * 8 6 5 10 10 H 1.08999 * 109.47092 * 35.00228 * 9 8 6 11 11 C 1.53000 * 109.47115 * 275.00138 * 9 8 6 12 12 C 1.50695 * 109.46713 * 155.00194 * 9 8 6 13 13 N 1.30831 * 125.96471 * 45.02373 * 12 9 8 14 14 C 1.33244 * 109.82945 * 179.97438 * 13 12 9 15 15 N 1.30709 * 108.94830 * 0.02562 * 14 13 12 16 16 N 1.34432 * 125.95905 * 224.71557 * 12 9 8 17 17 C 1.46493 * 126.82535 * 0.02562 * 16 12 9 18 18 N 1.31214 * 108.05413 * 359.97438 * 4 3 2 19 19 N 1.34965 * 126.06952 * 179.97438 * 2 1 3 20 20 C 1.46493 * 125.97624 * 0.02931 * 19 2 1 21 21 C 1.50690 * 109.47472 * 270.02686 * 20 19 2 22 22 H 1.07996 * 120.00250 * 0.02562 * 21 20 19 23 23 C 1.37883 * 120.00028 * 179.97438 * 21 20 19 24 24 N 1.31507 * 120.00019 * 0.02562 * 23 21 20 25 25 Si 1.86808 * 119.99839 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.46707 * 90.00476 * 25 23 21 27 27 H 1.48497 * 109.46868 * 210.00037 * 25 23 21 28 28 H 1.48495 * 109.47424 * 330.00516 * 25 23 21 29 29 H 1.09005 * 109.47188 * 90.02621 * 1 2 3 30 30 H 1.08997 * 109.47424 * 210.02502 * 1 2 3 31 31 H 1.09004 * 109.47111 * 330.02462 * 1 2 3 32 32 H 1.07998 * 126.06683 * 359.93862 * 3 2 1 33 33 H 0.96999 * 120.00586 * 179.97438 * 5 4 3 34 34 H 0.96999 * 120.00560 * 359.97438 * 8 6 5 35 35 H 1.09000 * 109.47091 * 60.00254 * 11 9 8 36 36 H 1.08998 * 109.46903 * 180.02562 * 11 9 8 37 37 H 1.08999 * 109.47214 * 300.00015 * 11 9 8 38 38 H 1.08005 * 125.52474 * 180.02562 * 14 13 12 39 39 H 1.08998 * 109.47389 * 89.99413 * 17 16 12 40 40 H 1.09001 * 109.47440 * 209.99900 * 17 16 12 41 41 H 1.08999 * 109.46954 * 329.99490 * 17 16 12 42 42 H 1.09003 * 109.47262 * 30.03261 * 20 19 2 43 43 H 1.09012 * 109.47086 * 150.02761 * 20 19 2 44 44 H 0.97001 * 119.99800 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0932 0.0000 4 6 3.6370 0.6546 0.0006 5 7 4.7737 1.4751 0.0003 6 6 4.6370 2.8159 -0.0001 7 8 3.5277 3.3139 -0.0007 8 7 5.7298 3.6047 0.0001 9 6 5.5811 5.0623 -0.0010 10 1 4.7064 5.3387 0.5878 11 6 5.4052 5.5559 -1.4384 12 6 6.8108 5.6930 0.5999 13 7 8.0496 5.3672 0.3335 14 6 8.8801 6.1297 1.0437 15 7 8.1781 6.9545 1.7755 16 7 6.8263 6.6925 1.4987 17 6 5.6642 7.3711 2.0774 18 7 3.6336 -0.6575 0.0015 19 7 2.3016 -1.0909 0.0005 20 6 1.8500 -2.4845 0.0005 21 6 1.6939 -2.9620 1.4212 22 1 1.9091 -2.2941 2.2421 23 6 1.2753 -4.2514 1.6731 24 7 1.0128 -5.0646 0.6735 25 14 1.0825 -4.8435 3.4343 26 1 -0.3003 -4.5682 3.9004 27 1 1.3445 -6.3039 3.4970 28 1 2.0499 -4.1292 4.3055 29 1 -0.3634 -0.0005 -1.0277 30 1 -0.3634 -0.8897 0.5142 31 1 -0.3633 0.8902 0.5135 32 1 1.9720 2.1211 -0.0009 33 1 5.6587 1.0779 0.0011 34 1 6.6147 3.2076 0.0009 35 1 4.5157 5.0997 -1.8730 36 1 5.2950 6.6403 -1.4392 37 1 6.2799 5.2796 -2.0271 38 1 9.9584 6.0750 1.0187 39 1 5.3552 6.8525 2.9850 40 1 5.9277 8.4008 2.3191 41 1 4.8447 7.3650 1.3587 42 1 0.8918 -2.5560 -0.5142 43 1 2.5852 -3.1047 -0.5126 44 1 0.7186 -5.9718 0.8507 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000616098460.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:47 Heat of formation + Delta-G solvation = 123.405150 kcal Electronic energy + Delta-G solvation = -27701.579405 eV Core-core repulsion = 23692.373900 eV Total energy + Delta-G solvation = -4009.205504 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.165 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.26686 -42.28511 -40.99524 -37.23704 -36.13283 -35.31317 -35.07735 -33.34114 -32.66168 -32.26035 -30.77289 -28.50048 -28.24909 -27.82094 -25.60062 -24.78783 -23.32012 -22.82819 -21.43679 -21.16465 -21.02775 -19.33464 -18.76586 -17.91712 -17.75340 -17.28827 -17.06889 -16.78178 -16.33851 -16.14634 -15.93484 -15.66085 -15.47068 -14.70791 -14.66804 -14.44984 -14.29526 -14.05762 -13.90558 -13.76149 -13.57938 -13.53122 -13.26151 -13.12434 -12.81832 -12.77637 -12.66170 -12.43501 -12.24052 -12.09097 -11.54787 -11.33341 -11.17999 -11.13562 -10.84613 -10.71858 -10.69384 -10.37552 -9.53335 -9.06002 -8.30987 -6.48736 0.38606 0.99039 1.06421 1.35900 1.38548 1.39746 1.51042 1.67104 1.83468 2.11249 2.36413 2.38397 2.82021 2.98274 3.06908 3.54996 3.69086 3.89129 4.03445 4.09330 4.19655 4.33870 4.46288 4.51370 4.61186 4.63370 4.77005 4.81555 4.83666 4.89991 5.00134 5.04266 5.11748 5.18546 5.22055 5.24362 5.38428 5.40469 5.55505 5.67580 5.81426 5.83742 6.00011 6.30643 6.63237 6.70061 6.97592 7.13117 7.22230 7.35700 8.74543 Molecular weight = 333.17amu Principal moments of inertia in cm(-1) A = 0.020100 B = 0.002179 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.703663 B =12848.550320 C =13273.889481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.086 3.914 3 C -0.293 4.293 4 C 0.292 3.708 5 N -0.635 5.635 6 C 0.721 3.279 7 O -0.589 6.589 8 N -0.717 5.717 9 C 0.250 3.750 10 H 0.117 0.883 11 C -0.153 4.153 12 C 0.265 3.735 13 N -0.552 5.552 14 C 0.196 3.804 15 N -0.341 5.341 16 N -0.372 5.372 17 C 0.078 3.922 18 N -0.362 5.362 19 N -0.344 5.344 20 C 0.276 3.724 21 C -0.552 4.552 22 H 0.049 0.951 23 C 0.023 3.977 24 N -0.918 5.918 25 Si 0.970 3.030 26 H -0.264 1.264 27 H -0.275 1.275 28 H -0.276 1.276 29 H 0.092 0.908 30 H 0.065 0.935 31 H 0.103 0.897 32 H 0.172 0.828 33 H 0.420 0.580 34 H 0.415 0.585 35 H 0.071 0.929 36 H 0.086 0.914 37 H 0.067 0.933 38 H 0.247 0.753 39 H 0.090 0.910 40 H 0.107 0.893 41 H 0.118 0.882 42 H 0.052 0.948 43 H 0.023 0.977 44 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.703 25.461 -0.978 26.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.044 4.044 3 C -0.324 4.324 4 C 0.037 3.963 5 N -0.287 5.287 6 C 0.421 3.579 7 O -0.466 6.466 8 N -0.374 5.374 9 C 0.142 3.858 10 H 0.134 0.866 11 C -0.212 4.212 12 C -0.013 4.013 13 N -0.280 5.280 14 C -0.106 4.106 15 N -0.169 5.169 16 N -0.162 5.162 17 C -0.063 4.063 18 N -0.192 5.192 19 N -0.127 5.127 20 C 0.157 3.843 21 C -0.590 4.590 22 H 0.067 0.933 23 C -0.178 4.178 24 N -0.556 5.556 25 Si 0.794 3.206 26 H -0.189 1.189 27 H -0.200 1.200 28 H -0.201 1.201 29 H 0.111 0.889 30 H 0.084 0.916 31 H 0.122 0.878 32 H 0.189 0.811 33 H 0.257 0.743 34 H 0.252 0.748 35 H 0.090 0.910 36 H 0.105 0.895 37 H 0.086 0.914 38 H 0.263 0.737 39 H 0.109 0.891 40 H 0.126 0.874 41 H 0.136 0.864 42 H 0.070 0.930 43 H 0.041 0.959 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.689 24.940 -0.708 26.420 hybrid contribution 0.490 -0.511 0.797 1.066 sum 9.180 24.430 0.089 26.098 Atomic orbital electron populations 1.20496 0.85396 1.04346 1.04089 1.21765 0.96663 0.86434 0.99527 1.21415 0.89617 1.00001 1.21387 1.18926 0.87991 0.88859 1.00530 1.41339 1.07214 1.03790 1.76323 1.15523 0.84816 0.80050 0.77529 1.90843 1.24503 1.73681 1.57543 1.44781 1.07990 1.05209 1.79441 1.19136 0.90607 0.77751 0.98257 0.86552 1.22144 1.03421 1.02513 0.93110 1.24282 0.95624 0.90237 0.91146 1.70385 0.99117 1.29744 1.28790 1.26628 1.02543 0.90199 0.91231 1.78055 0.87141 1.26233 1.25479 1.50492 1.06685 1.27523 1.31518 1.22439 0.83499 0.99422 1.00921 1.77181 1.00128 1.09901 1.32031 1.48760 1.01665 1.07490 1.54781 1.19219 0.94872 0.72536 0.97670 1.21442 1.47408 0.98343 0.91844 0.93275 1.25725 0.94023 0.95955 1.02139 1.70000 1.45112 1.07548 1.32950 0.85370 0.78972 0.77521 0.78706 1.18885 1.19991 1.20147 0.88917 0.91601 0.87812 0.81099 0.74274 0.74806 0.90958 0.89490 0.91372 0.73687 0.89149 0.87409 0.86387 0.92995 0.95855 0.91762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.77 9.89 71.23 0.70 -2.07 16 2 C 0.09 3.57 6.92 41.38 0.29 3.86 16 3 C -0.29 -11.62 9.52 22.11 0.21 -11.41 16 4 C 0.29 11.68 8.11 133.31 1.08 12.76 16 5 N -0.64 -18.97 5.46 -321.23 -1.75 -20.72 16 6 C 0.72 19.23 8.50 179.05 1.52 20.75 16 7 O -0.59 -18.56 13.13 -4.00 -0.05 -18.61 16 8 N -0.72 -13.55 5.07 -461.40 -2.34 -15.89 16 9 C 0.25 3.92 2.85 44.24 0.13 4.04 16 10 H 0.12 1.72 6.58 -2.39 -0.02 1.70 16 11 C -0.15 -2.08 9.47 71.98 0.68 -1.40 16 12 C 0.26 4.44 6.78 138.22 0.94 5.38 16 13 N -0.55 -10.23 10.88 -191.78 -2.09 -12.32 16 14 C 0.20 3.24 13.03 180.77 2.36 5.60 16 15 N -0.34 -6.40 12.70 -61.24 -0.78 -7.18 16 16 N -0.37 -5.85 4.04 -359.89 -1.45 -7.30 16 17 C 0.08 0.60 11.11 127.77 1.42 2.02 16 18 N -0.36 -16.93 12.59 -54.43 -0.69 -17.62 16 19 N -0.34 -16.59 3.59 -338.46 -1.22 -17.81 16 20 C 0.28 14.58 5.81 85.63 0.50 15.08 16 21 C -0.55 -30.94 9.39 25.60 0.24 -30.70 16 22 H 0.05 2.85 7.81 -2.91 -0.02 2.82 16 23 C 0.02 1.23 5.46 84.66 0.46 1.70 16 24 N -0.92 -51.81 13.29 21.45 0.28 -51.52 16 25 Si 0.97 43.04 29.54 68.60 2.03 45.06 16 26 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 27 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 28 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 29 H 0.09 2.59 8.14 -2.38 -0.02 2.57 16 30 H 0.07 2.37 7.71 -2.39 -0.02 2.35 16 31 H 0.10 2.74 8.14 -2.38 -0.02 2.73 16 32 H 0.17 6.39 5.91 -2.91 -0.02 6.37 16 33 H 0.42 10.26 8.84 -92.71 -0.82 9.44 16 34 H 0.41 6.90 8.36 -92.71 -0.77 6.12 16 35 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.25 2.16 8.06 -2.91 -0.02 2.13 16 39 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.12 0.38 7.39 -2.39 -0.02 0.36 16 42 H 0.05 2.71 7.65 -2.39 -0.02 2.69 16 43 H 0.02 1.34 8.14 -2.38 -0.02 1.32 16 44 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 Total: -1.00 -74.96 380.19 1.94 -73.03 By element: Atomic # 1 Polarization: 25.81 SS G_CDS: -0.53 Total: 25.28 kcal Atomic # 6 Polarization: 15.08 SS G_CDS: 10.52 Total: 25.60 kcal Atomic # 7 Polarization: -140.34 SS G_CDS: -10.03 Total: -150.36 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: -0.05 Total: -18.61 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.06 kcal Total: -74.96 1.94 -73.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000616098460.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.432 kcal (2) G-P(sol) polarization free energy of solvation -74.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds