Wall clock time and date at job start Tue Mar 31 2020 17:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42894 * 114.00047 * 2 1 4 4 C 1.53004 * 109.47329 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47129 * 65.34810 * 4 3 2 6 6 C 1.46501 * 119.99786 * 264.78339 * 5 4 3 7 7 C 1.50691 * 109.47168 * 275.64439 * 6 5 4 8 8 H 1.08001 * 120.00198 * 0.02562 * 7 6 5 9 9 C 1.37878 * 120.00088 * 180.02562 * 7 6 5 10 10 N 1.31512 * 120.00021 * 0.02562 * 9 7 6 11 11 Si 1.86807 * 120.00250 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47008 * 89.99852 * 11 9 7 13 13 H 1.48494 * 109.47006 * 210.00083 * 11 9 7 14 14 H 1.48504 * 109.46552 * 329.99966 * 11 9 7 15 15 C 1.34773 * 119.99802 * 84.78206 * 5 4 3 16 16 O 1.21279 * 120.00167 * 5.37671 * 15 5 4 17 17 C 1.50700 * 119.99918 * 185.36672 * 15 5 4 18 18 H 1.09006 * 109.70675 * 45.73319 * 17 15 5 19 19 C 1.53405 * 109.68775 * 285.18752 * 17 15 5 20 20 C 1.53074 * 108.30159 * 175.54010 * 19 17 15 21 21 C 1.50767 * 109.67833 * 48.16778 * 20 19 17 22 22 C 1.38512 * 118.75943 * 162.32398 * 21 20 19 23 23 C 1.38100 * 120.31754 * 179.84917 * 22 21 20 24 24 C 1.50696 * 120.00642 * 179.97438 * 23 22 21 25 25 C 1.38294 * 119.98178 * 359.97438 * 23 22 21 26 26 C 1.37959 * 119.96082 * 0.07253 * 25 23 22 27 27 C 1.38366 * 121.41252 * 342.30619 * 21 20 19 28 28 O 1.35842 * 121.80890 * 0.33298 * 27 21 20 29 29 H 1.08995 * 109.47375 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46971 * 300.00598 * 1 2 3 31 31 H 1.09004 * 109.46686 * 60.00525 * 1 2 3 32 32 H 1.08994 * 109.47775 * 59.99600 * 3 2 1 33 33 H 1.09003 * 109.47381 * 299.99598 * 3 2 1 34 34 H 1.09004 * 109.46745 * 305.35103 * 4 3 2 35 35 H 1.09003 * 109.47239 * 185.35142 * 4 3 2 36 36 H 1.09001 * 109.47210 * 35.64526 * 6 5 4 37 37 H 1.09001 * 109.46924 * 155.64197 * 6 5 4 38 38 H 0.97003 * 120.00320 * 180.02562 * 10 9 7 39 39 H 1.09003 * 109.69766 * 55.84455 * 19 17 15 40 40 H 1.08990 * 109.69997 * 295.24844 * 19 17 15 41 41 H 1.08998 * 109.43395 * 168.23137 * 20 19 17 42 42 H 1.09002 * 109.43527 * 288.14381 * 20 19 17 43 43 H 1.08003 * 119.83777 * 359.82407 * 22 21 20 44 44 H 1.09006 * 109.46919 * 270.01834 * 24 23 22 45 45 H 1.08993 * 109.47361 * 30.01942 * 24 23 22 46 46 H 1.08999 * 109.47272 * 150.02984 * 24 23 22 47 47 H 1.08004 * 120.01438 * 180.09520 * 25 23 22 48 48 H 1.07995 * 119.89363 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9774 0.5715 -1.2544 6 6 4.2171 -0.8723 -1.3197 7 6 5.6117 -1.1724 -0.8340 8 1 6.2550 -0.3682 -0.5088 9 6 6.0664 -2.4737 -0.8049 10 7 5.2832 -3.4530 -1.2014 11 14 7.7949 -2.8459 -0.2021 12 1 7.7674 -3.0848 1.2633 13 1 8.3096 -4.0562 -0.8915 14 1 8.6817 -1.6922 -0.4990 15 6 4.1632 1.3357 -2.3489 16 8 4.0598 2.5416 -2.2712 17 6 4.4999 0.6919 -3.6692 18 1 3.8443 -0.1622 -3.8393 19 6 5.9619 0.2274 -3.6598 20 6 6.2375 -0.5190 -4.9675 21 6 5.7263 0.2910 -6.1318 22 6 6.1890 -0.0046 -7.4035 23 6 5.7399 0.7148 -8.4934 24 6 6.2484 0.3877 -9.8738 25 6 4.8234 1.7354 -8.3178 26 6 4.3597 2.0350 -7.0535 27 6 4.8118 1.3137 -5.9527 28 8 4.3363 1.6418 -4.7232 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.6886 1.8464 0.8899 33 1 1.6887 1.8463 -0.8900 34 1 3.8504 0.5633 0.8391 35 1 3.9784 2.1760 0.0965 36 1 3.4937 -1.3896 -0.6895 37 1 4.1101 -1.2121 -2.3499 38 1 5.6030 -4.3685 -1.1805 39 1 6.1302 -0.4391 -2.8139 40 1 6.6215 1.0918 -3.5841 41 1 7.3107 -0.6744 -5.0771 42 1 5.7314 -1.4842 -4.9478 43 1 6.9048 -0.8012 -7.5432 44 1 7.1408 0.9782 -10.0816 45 1 6.4936 -0.6729 -9.9288 46 1 5.4788 0.6215 -10.6094 47 1 4.4706 2.2974 -9.1700 48 1 3.6443 2.8325 -6.9175 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619434651.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:49 Heat of formation + Delta-G solvation = -101.174498 kcal Electronic energy + Delta-G solvation = -29777.122741 eV Core-core repulsion = 25797.133573 eV Total energy + Delta-G solvation = -3979.989168 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.63535 -39.14941 -37.64453 -37.06196 -35.10787 -33.87720 -32.73431 -32.09766 -30.70277 -29.48805 -27.47272 -27.01370 -26.03574 -25.24599 -23.12207 -22.96885 -22.47179 -22.05015 -19.49752 -18.59689 -17.64127 -16.76324 -16.50014 -16.27109 -15.94280 -15.72822 -15.01404 -14.93980 -14.73121 -14.48585 -14.23503 -14.10990 -13.99449 -13.59020 -13.50029 -13.08632 -12.99912 -12.64535 -12.41838 -12.26906 -12.17130 -12.03749 -11.77665 -11.58619 -11.49265 -11.25720 -11.08276 -10.95814 -10.90993 -10.84020 -10.59437 -10.44522 -10.19612 -9.96733 -9.76484 -9.41590 -8.99616 -8.60629 -8.58069 -7.79387 -7.75838 -6.24025 -4.31161 1.49165 1.57871 3.08563 3.18817 3.24389 3.27077 3.33224 3.85963 4.11045 4.18706 4.31296 4.87106 4.92641 4.99993 5.07458 5.09655 5.25751 5.32418 5.36149 5.39351 5.42412 5.48593 5.57343 5.60281 5.63209 5.64685 5.69045 5.75913 5.82958 5.83639 5.88670 5.95451 6.06296 6.17633 6.27150 6.33596 6.43531 6.49992 6.66496 6.70361 6.73879 6.87143 7.01645 7.21850 7.44234 7.48860 7.71334 7.77245 7.99343 8.25316 8.71242 8.89941 9.34752 10.81766 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009405 B = 0.004381 C = 0.003293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2976.482029 B = 6389.980748 C = 8500.955342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.376 6.376 3 C 0.046 3.954 4 C 0.125 3.875 5 N -0.582 5.582 6 C 0.234 3.766 7 C -0.541 4.541 8 H 0.063 0.937 9 C 0.070 3.930 10 N -0.883 5.883 11 Si 0.892 3.108 12 H -0.278 1.278 13 H -0.284 1.284 14 H -0.272 1.272 15 C 0.525 3.475 16 O -0.556 6.556 17 C 0.085 3.915 18 H 0.095 0.905 19 C -0.167 4.167 20 C -0.074 4.074 21 C -0.152 4.152 22 C -0.085 4.085 23 C -0.129 4.129 24 C -0.105 4.105 25 C -0.093 4.093 26 C -0.148 4.148 27 C 0.137 3.863 28 O -0.298 6.298 29 H 0.083 0.917 30 H 0.035 0.965 31 H 0.035 0.965 32 H 0.051 0.949 33 H 0.049 0.951 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.050 0.950 37 H 0.037 0.963 38 H 0.266 0.734 39 H 0.142 0.858 40 H 0.069 0.931 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.122 0.878 44 H 0.064 0.936 45 H 0.062 0.938 46 H 0.061 0.939 47 H 0.123 0.877 48 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.927 5.091 -8.447 10.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.295 6.295 3 C -0.031 4.031 4 C 0.001 3.999 5 N -0.313 5.313 6 C 0.114 3.886 7 C -0.580 4.580 8 H 0.082 0.918 9 C -0.134 4.134 10 N -0.520 5.520 11 Si 0.719 3.281 12 H -0.204 1.204 13 H -0.210 1.210 14 H -0.196 1.196 15 C 0.312 3.688 16 O -0.436 6.436 17 C 0.026 3.974 18 H 0.112 0.888 19 C -0.204 4.204 20 C -0.111 4.111 21 C -0.153 4.153 22 C -0.103 4.103 23 C -0.130 4.130 24 C -0.162 4.162 25 C -0.111 4.111 26 C -0.167 4.167 27 C 0.091 3.909 28 O -0.211 6.211 29 H 0.101 0.899 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.111 0.889 35 H 0.105 0.895 36 H 0.068 0.932 37 H 0.054 0.946 38 H 0.076 0.924 39 H 0.160 0.840 40 H 0.088 0.912 41 H 0.100 0.900 42 H 0.102 0.898 43 H 0.140 0.860 44 H 0.083 0.917 45 H 0.081 0.919 46 H 0.080 0.920 47 H 0.141 0.859 48 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.981 5.492 -8.348 10.428 hybrid contribution 0.751 -0.364 0.389 0.920 sum -2.230 5.129 -7.959 9.728 Atomic orbital electron populations 1.22684 0.82111 1.02388 0.99243 1.88037 1.18709 1.27491 1.95227 1.23039 0.95244 0.84920 0.99937 1.21342 0.90966 0.99797 0.87750 1.48014 1.64042 1.11023 1.08268 1.19606 0.97042 0.73209 0.98706 1.21458 0.98907 0.92874 1.44740 0.91838 1.24924 0.97718 0.95980 0.94813 1.69929 1.36162 1.00026 1.45896 0.86586 0.84257 0.78095 0.79162 1.20429 1.21007 1.19628 1.19770 0.77220 0.86721 0.85105 1.90617 1.52879 1.14304 1.85795 1.22238 0.99379 0.90438 0.85370 0.88757 1.22610 0.93423 1.02917 1.01439 1.20489 1.01541 0.98194 0.90913 1.20041 0.99574 0.99371 0.96277 1.20766 0.99397 0.99209 0.90969 1.19707 0.99742 0.97959 0.95544 1.20671 1.00830 1.01629 0.93076 1.20700 0.97148 0.97204 0.96053 1.20540 1.03192 1.02546 0.90401 1.18768 0.92946 0.94380 0.84827 1.85985 1.75976 1.43607 1.15519 0.89866 0.94669 0.94616 0.93042 0.93316 0.88888 0.89510 0.93238 0.94551 0.92396 0.84004 0.91236 0.90048 0.89795 0.86023 0.91738 0.91892 0.91958 0.85876 0.85440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.54 16 2 O -0.38 -6.60 10.03 -35.23 -0.35 -6.95 16 3 C 0.05 0.76 6.24 37.16 0.23 0.99 16 4 C 0.12 2.28 5.80 -4.04 -0.02 2.26 16 5 N -0.58 -12.18 2.42 -175.06 -0.42 -12.60 16 6 C 0.23 5.37 4.60 -5.20 -0.02 5.35 16 7 C -0.54 -13.20 6.87 -34.44 -0.24 -13.43 16 8 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 9 C 0.07 1.74 5.46 -17.82 -0.10 1.65 16 10 N -0.88 -23.15 13.29 55.43 0.74 -22.42 16 11 Si 0.89 19.59 29.54 -169.99 -5.02 14.57 16 12 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 13 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 14 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 15 C 0.53 11.35 6.98 -10.99 -0.08 11.28 16 16 O -0.56 -13.12 16.20 -13.85 -0.22 -13.34 16 17 C 0.08 1.70 2.34 -27.67 -0.06 1.63 16 18 H 0.09 1.87 6.85 -51.93 -0.36 1.52 16 19 C -0.17 -3.18 5.22 -26.48 -0.14 -3.32 16 20 C -0.07 -1.24 5.86 -27.81 -0.16 -1.40 16 21 C -0.15 -2.48 5.75 -104.44 -0.60 -3.08 16 22 C -0.09 -1.19 9.32 -39.53 -0.37 -1.56 16 23 C -0.13 -1.64 5.88 -104.65 -0.62 -2.25 16 24 C -0.11 -0.98 10.01 36.00 0.36 -0.62 16 25 C -0.09 -1.19 9.70 -39.66 -0.38 -1.58 16 26 C -0.15 -2.25 9.94 -39.34 -0.39 -2.64 16 27 C 0.14 2.41 6.47 -39.19 -0.25 2.16 16 28 O -0.30 -5.99 9.50 -38.66 -0.37 -6.36 16 29 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.09 1.69 8.03 -51.93 -0.42 1.27 16 35 H 0.09 1.53 7.51 -51.93 -0.39 1.14 16 36 H 0.05 1.24 7.53 -51.93 -0.39 0.85 16 37 H 0.04 0.86 5.62 -51.93 -0.29 0.57 16 38 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 39 H 0.14 3.00 4.39 -51.93 -0.23 2.77 16 40 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 43 H 0.12 1.46 8.06 -52.48 -0.42 1.03 16 44 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 45 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 46 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 47 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 48 H 0.13 1.79 8.06 -52.49 -0.42 1.36 16 LS Contribution 389.42 15.07 5.87 5.87 Total: -1.00 -29.24 389.42 -9.05 -38.29 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -7.53 Total: 5.99 kcal Atomic # 6 Polarization: -1.31 SS G_CDS: -1.73 Total: -3.04 kcal Atomic # 7 Polarization: -35.33 SS G_CDS: 0.31 Total: -35.02 kcal Atomic # 8 Polarization: -25.71 SS G_CDS: -0.94 Total: -26.66 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.02 Total: 14.57 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -29.24 -9.05 -38.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619434651.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.885 kcal (2) G-P(sol) polarization free energy of solvation -29.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds