Wall clock time and date at job start Tue Mar 31 2020 17:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42894 * 114.00047 * 2 1 4 4 C 1.53004 * 109.47329 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47129 * 65.34810 * 4 3 2 6 6 C 1.46501 * 119.99786 * 264.78339 * 5 4 3 7 7 C 1.50691 * 109.47168 * 275.64439 * 6 5 4 8 8 H 1.08001 * 120.00198 * 0.02562 * 7 6 5 9 9 C 1.37878 * 120.00088 * 180.02562 * 7 6 5 10 10 N 1.31512 * 120.00021 * 0.02562 * 9 7 6 11 11 Si 1.86807 * 120.00250 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47008 * 89.99852 * 11 9 7 13 13 H 1.48494 * 109.47006 * 210.00083 * 11 9 7 14 14 H 1.48504 * 109.46552 * 329.99966 * 11 9 7 15 15 C 1.34773 * 119.99802 * 84.78206 * 5 4 3 16 16 O 1.21279 * 120.00167 * 5.37671 * 15 5 4 17 17 C 1.50700 * 119.99918 * 185.36672 * 15 5 4 18 18 H 1.09006 * 109.70675 * 45.73319 * 17 15 5 19 19 C 1.53405 * 109.68775 * 285.18752 * 17 15 5 20 20 C 1.53074 * 108.30159 * 175.54010 * 19 17 15 21 21 C 1.50767 * 109.67833 * 48.16778 * 20 19 17 22 22 C 1.38512 * 118.75943 * 162.32398 * 21 20 19 23 23 C 1.38100 * 120.31754 * 179.84917 * 22 21 20 24 24 C 1.50696 * 120.00642 * 179.97438 * 23 22 21 25 25 C 1.38294 * 119.98178 * 359.97438 * 23 22 21 26 26 C 1.37959 * 119.96082 * 0.07253 * 25 23 22 27 27 C 1.38366 * 121.41252 * 342.30619 * 21 20 19 28 28 O 1.35842 * 121.80890 * 0.33298 * 27 21 20 29 29 H 1.08995 * 109.47375 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46971 * 300.00598 * 1 2 3 31 31 H 1.09004 * 109.46686 * 60.00525 * 1 2 3 32 32 H 1.08994 * 109.47775 * 59.99600 * 3 2 1 33 33 H 1.09003 * 109.47381 * 299.99598 * 3 2 1 34 34 H 1.09004 * 109.46745 * 305.35103 * 4 3 2 35 35 H 1.09003 * 109.47239 * 185.35142 * 4 3 2 36 36 H 1.09001 * 109.47210 * 35.64526 * 6 5 4 37 37 H 1.09001 * 109.46924 * 155.64197 * 6 5 4 38 38 H 0.97003 * 120.00320 * 180.02562 * 10 9 7 39 39 H 1.09003 * 109.69766 * 55.84455 * 19 17 15 40 40 H 1.08990 * 109.69997 * 295.24844 * 19 17 15 41 41 H 1.08998 * 109.43395 * 168.23137 * 20 19 17 42 42 H 1.09002 * 109.43527 * 288.14381 * 20 19 17 43 43 H 1.08003 * 119.83777 * 359.82407 * 22 21 20 44 44 H 1.09006 * 109.46919 * 270.01834 * 24 23 22 45 45 H 1.08993 * 109.47361 * 30.01942 * 24 23 22 46 46 H 1.08999 * 109.47272 * 150.02984 * 24 23 22 47 47 H 1.08004 * 120.01438 * 180.09520 * 25 23 22 48 48 H 1.07995 * 119.89363 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9774 0.5715 -1.2544 6 6 4.2171 -0.8723 -1.3197 7 6 5.6117 -1.1724 -0.8340 8 1 6.2550 -0.3682 -0.5088 9 6 6.0664 -2.4737 -0.8049 10 7 5.2832 -3.4530 -1.2014 11 14 7.7949 -2.8459 -0.2021 12 1 7.7674 -3.0848 1.2633 13 1 8.3096 -4.0562 -0.8915 14 1 8.6817 -1.6922 -0.4990 15 6 4.1632 1.3357 -2.3489 16 8 4.0598 2.5416 -2.2712 17 6 4.4999 0.6919 -3.6692 18 1 3.8443 -0.1622 -3.8393 19 6 5.9619 0.2274 -3.6598 20 6 6.2375 -0.5190 -4.9675 21 6 5.7263 0.2910 -6.1318 22 6 6.1890 -0.0046 -7.4035 23 6 5.7399 0.7148 -8.4934 24 6 6.2484 0.3877 -9.8738 25 6 4.8234 1.7354 -8.3178 26 6 4.3597 2.0350 -7.0535 27 6 4.8118 1.3137 -5.9527 28 8 4.3363 1.6418 -4.7232 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.6886 1.8464 0.8899 33 1 1.6887 1.8463 -0.8900 34 1 3.8504 0.5633 0.8391 35 1 3.9784 2.1760 0.0965 36 1 3.4937 -1.3896 -0.6895 37 1 4.1101 -1.2121 -2.3499 38 1 5.6030 -4.3685 -1.1805 39 1 6.1302 -0.4391 -2.8139 40 1 6.6215 1.0918 -3.5841 41 1 7.3107 -0.6744 -5.0771 42 1 5.7314 -1.4842 -4.9478 43 1 6.9048 -0.8012 -7.5432 44 1 7.1408 0.9782 -10.0816 45 1 6.4936 -0.6729 -9.9288 46 1 5.4788 0.6215 -10.6094 47 1 4.4706 2.2974 -9.1700 48 1 3.6443 2.8325 -6.9175 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619434651.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:48 Heat of formation + Delta-G solvation = -115.859634 kcal Electronic energy + Delta-G solvation = -29777.759536 eV Core-core repulsion = 25797.133573 eV Total energy + Delta-G solvation = -3980.625963 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.05004 -40.66251 -38.91675 -38.40580 -36.85739 -35.25669 -34.60030 -33.23290 -32.01500 -30.87241 -29.15830 -28.33175 -27.18678 -26.49484 -24.86062 -24.46612 -23.84704 -23.22530 -20.84767 -20.17747 -19.02073 -18.55312 -18.14333 -17.73347 -17.31908 -17.06563 -16.55681 -16.40995 -16.12003 -15.90832 -15.59125 -15.44349 -15.27847 -14.87385 -14.58501 -14.56319 -14.22040 -14.16972 -13.86084 -13.75813 -13.45281 -13.27227 -13.12537 -13.00019 -12.79540 -12.76768 -12.60421 -12.48022 -12.29811 -12.12725 -12.03126 -11.88682 -11.85832 -11.66834 -11.31571 -10.80463 -10.63061 -10.46561 -9.73456 -9.54692 -8.96282 -8.17767 -6.30712 0.36743 0.43135 1.43504 1.44624 1.48426 1.55017 1.69603 2.41291 2.62890 2.79412 2.90178 3.12439 3.48042 3.60770 3.77638 3.82953 3.86253 4.06485 4.11106 4.18204 4.25645 4.30208 4.35776 4.43325 4.50914 4.52955 4.54821 4.58889 4.63314 4.79839 4.82341 4.85697 4.91430 4.92642 4.93772 5.03151 5.13144 5.20619 5.22186 5.32838 5.38872 5.51230 5.63443 5.68653 5.78571 5.91865 6.06089 6.23923 6.41110 6.49799 6.78985 7.14393 7.38826 8.87937 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009405 B = 0.004381 C = 0.003293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2976.482029 B = 6389.980748 C = 8500.955342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.409 6.409 3 C 0.055 3.945 4 C 0.117 3.883 5 N -0.582 5.582 6 C 0.254 3.746 7 C -0.542 4.542 8 H 0.057 0.943 9 C 0.032 3.968 10 N -0.912 5.912 11 Si 0.949 3.051 12 H -0.277 1.277 13 H -0.280 1.280 14 H -0.269 1.269 15 C 0.521 3.479 16 O -0.580 6.580 17 C 0.090 3.910 18 H 0.088 0.912 19 C -0.158 4.158 20 C -0.069 4.069 21 C -0.165 4.165 22 C -0.091 4.091 23 C -0.121 4.121 24 C -0.104 4.104 25 C -0.088 4.088 26 C -0.157 4.157 27 C 0.095 3.905 28 O -0.319 6.319 29 H 0.091 0.909 30 H 0.059 0.941 31 H 0.039 0.961 32 H 0.086 0.914 33 H 0.036 0.964 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.028 0.972 37 H 0.026 0.974 38 H 0.268 0.732 39 H 0.121 0.879 40 H 0.061 0.939 41 H 0.099 0.901 42 H 0.078 0.922 43 H 0.143 0.857 44 H 0.078 0.922 45 H 0.072 0.928 46 H 0.079 0.921 47 H 0.158 0.842 48 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.214 5.187 -10.169 11.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.328 6.328 3 C -0.023 4.023 4 C -0.006 4.006 5 N -0.312 5.312 6 C 0.134 3.866 7 C -0.580 4.580 8 H 0.075 0.925 9 C -0.169 4.169 10 N -0.550 5.550 11 Si 0.775 3.225 12 H -0.203 1.203 13 H -0.206 1.206 14 H -0.193 1.193 15 C 0.309 3.691 16 O -0.461 6.461 17 C 0.031 3.969 18 H 0.105 0.895 19 C -0.196 4.196 20 C -0.106 4.106 21 C -0.166 4.166 22 C -0.109 4.109 23 C -0.121 4.121 24 C -0.161 4.161 25 C -0.106 4.106 26 C -0.175 4.175 27 C 0.051 3.949 28 O -0.233 6.233 29 H 0.110 0.890 30 H 0.077 0.923 31 H 0.058 0.942 32 H 0.104 0.896 33 H 0.055 0.945 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.046 0.954 37 H 0.044 0.956 38 H 0.077 0.923 39 H 0.139 0.861 40 H 0.080 0.920 41 H 0.118 0.882 42 H 0.097 0.903 43 H 0.161 0.839 44 H 0.096 0.904 45 H 0.091 0.909 46 H 0.098 0.902 47 H 0.175 0.825 48 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -2.277 5.592 -10.067 11.739 hybrid contribution 0.477 -0.362 0.830 1.023 sum -1.800 5.230 -9.238 10.767 Atomic orbital electron populations 1.22886 0.79928 1.03464 1.00613 1.87986 1.21213 1.28138 1.95487 1.22936 0.93555 0.84852 1.00944 1.21558 0.92815 0.99732 0.86448 1.48025 1.63728 1.10241 1.09205 1.19214 0.95930 0.74128 0.97376 1.21534 0.99213 0.92839 1.44450 0.92482 1.25537 1.00799 0.95757 0.94853 1.70019 1.37735 1.00358 1.46929 0.85687 0.80398 0.77922 0.78525 1.20313 1.20564 1.19308 1.20072 0.76787 0.86505 0.85773 1.90583 1.54137 1.15133 1.86257 1.22062 0.99672 0.90158 0.85012 0.89480 1.22449 0.92726 1.02236 1.02182 1.20437 1.02635 0.97575 0.89921 1.20087 0.99978 0.99373 0.97137 1.21057 0.99643 0.99923 0.90282 1.20188 0.98376 0.96649 0.96915 1.20753 1.01793 1.02553 0.90962 1.21117 0.96388 0.97124 0.95935 1.20793 1.03453 1.02501 0.90779 1.19178 0.94887 0.96490 0.84382 1.85940 1.76993 1.43874 1.16521 0.89047 0.92262 0.94189 0.89591 0.94528 0.89031 0.88956 0.95437 0.95631 0.92254 0.86097 0.92004 0.88246 0.90349 0.83931 0.90385 0.90922 0.90216 0.82466 0.85020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 11.01 113.37 1.25 1.94 16 2 O -0.41 -14.43 10.03 -148.98 -1.49 -15.92 16 3 C 0.05 1.78 6.24 71.98 0.45 2.23 16 4 C 0.12 4.36 5.80 86.38 0.50 4.86 16 5 N -0.58 -25.28 2.42 -826.14 -2.00 -27.28 16 6 C 0.25 12.15 4.60 85.63 0.39 12.54 16 7 C -0.54 -27.06 6.87 25.60 0.18 -26.88 16 8 H 0.06 2.89 7.81 -2.91 -0.02 2.86 16 9 C 0.03 1.62 5.46 84.66 0.46 2.08 16 10 N -0.91 -48.53 13.29 21.45 0.28 -48.24 16 11 Si 0.95 40.22 29.54 68.60 2.03 42.24 16 12 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 13 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 14 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 15 C 0.52 23.51 6.98 87.66 0.61 24.12 16 16 O -0.58 -28.28 16.20 15.53 0.25 -28.03 16 17 C 0.09 3.79 2.34 29.98 0.07 3.86 16 18 H 0.09 3.70 6.85 -2.38 -0.02 3.69 16 19 C -0.16 -6.29 5.22 30.75 0.16 -6.13 16 20 C -0.07 -2.31 5.86 29.89 0.18 -2.14 16 21 C -0.16 -5.36 5.75 -19.75 -0.11 -5.48 16 22 C -0.09 -2.37 9.32 22.30 0.21 -2.16 16 23 C -0.12 -2.69 5.88 -19.89 -0.12 -2.81 16 24 C -0.10 -1.50 10.01 71.23 0.71 -0.78 16 25 C -0.09 -2.02 9.70 22.22 0.22 -1.81 16 26 C -0.16 -4.66 9.94 22.42 0.22 -4.44 16 27 C 0.10 3.41 6.47 22.52 0.15 3.56 16 28 O -0.32 -13.41 9.50 -73.22 -0.70 -14.10 16 29 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.04 0.97 8.14 -2.39 -0.02 0.96 16 32 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.09 3.40 8.03 -2.39 -0.02 3.38 16 35 H 0.09 3.31 7.51 -2.39 -0.02 3.29 16 36 H 0.03 1.44 7.53 -2.39 -0.02 1.42 16 37 H 0.03 1.28 5.62 -2.39 -0.01 1.27 16 38 H 0.27 13.56 8.31 -92.71 -0.77 12.79 16 39 H 0.12 5.32 4.39 -2.39 -0.01 5.31 16 40 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 41 H 0.10 2.90 8.14 -2.39 -0.02 2.89 16 42 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 43 H 0.14 3.02 8.06 -2.91 -0.02 3.00 16 44 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 45 H 0.07 0.94 8.08 -2.39 -0.02 0.92 16 46 H 0.08 0.91 8.09 -2.39 -0.02 0.89 16 47 H 0.16 2.50 8.06 -2.91 -0.02 2.48 16 48 H 0.13 3.67 8.06 -2.91 -0.02 3.64 16 Total: -1.00 -64.31 389.42 4.85 -59.47 By element: Atomic # 1 Polarization: 28.34 SS G_CDS: 0.95 Total: 29.29 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: 5.52 Total: 2.57 kcal Atomic # 7 Polarization: -73.80 SS G_CDS: -1.71 Total: -75.52 kcal Atomic # 8 Polarization: -56.11 SS G_CDS: -1.94 Total: -58.05 kcal Atomic # 14 Polarization: 40.22 SS G_CDS: 2.03 Total: 42.24 kcal Total: -64.31 4.85 -59.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619434651.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.394 kcal (2) G-P(sol) polarization free energy of solvation -64.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds