Wall clock time and date at job start Tue Mar 31 2020 17:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38259 * 119.99752 * 2 1 4 4 C 1.38215 * 119.99782 * 179.76972 * 3 2 1 5 5 C 1.38253 * 119.99824 * 0.48704 * 4 3 2 6 6 C 1.50704 * 119.99983 * 179.76972 * 5 4 3 7 7 C 1.38214 * 120.00226 * 359.49146 * 5 4 3 8 8 C 1.50700 * 119.99792 * 180.27770 * 7 5 4 9 9 C 1.50703 * 109.47215 * 85.00068 * 8 7 5 10 10 O 1.20827 * 119.99604 * 359.97438 * 9 8 7 11 11 O 1.34223 * 120.00169 * 179.97438 * 9 8 7 12 12 C 1.45198 * 117.00271 * 179.97438 * 11 9 8 13 13 H 1.09001 * 109.46760 * 30.00297 * 12 11 9 14 14 C 1.52997 * 109.47530 * 270.00733 * 12 11 9 15 15 C 1.50705 * 109.46958 * 150.00477 * 12 11 9 16 16 O 1.21269 * 120.00155 * 16.03102 * 15 12 11 17 17 N 1.34777 * 119.99461 * 196.02997 * 15 12 11 18 18 C 1.46497 * 120.00512 * 5.36229 * 17 15 12 19 19 C 1.46507 * 119.99754 * 185.36567 * 17 15 12 20 20 C 1.50701 * 109.47188 * 89.99746 * 19 17 15 21 21 H 1.08007 * 119.99833 * 0.02562 * 20 19 17 22 22 C 1.37877 * 120.00193 * 180.02562 * 20 19 17 23 23 N 1.31517 * 119.99692 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00211 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47472 * 89.99746 * 24 22 20 26 26 H 1.48501 * 109.47328 * 209.99802 * 24 22 20 27 27 H 1.48504 * 109.47354 * 329.99927 * 24 22 20 28 28 C 1.38213 * 120.00300 * 179.97438 * 2 1 3 29 29 H 1.08997 * 109.47155 * 270.02279 * 1 2 3 30 30 H 1.09000 * 109.47319 * 30.02136 * 1 2 3 31 31 H 1.09003 * 109.46835 * 150.02132 * 1 2 3 32 32 H 1.08002 * 120.00089 * 0.02562 * 3 2 1 33 33 H 1.08007 * 119.99684 * 180.25708 * 4 3 2 34 34 H 1.09003 * 109.46728 * 269.72606 * 6 5 4 35 35 H 1.08994 * 109.47388 * 149.72618 * 6 5 4 36 36 H 1.09003 * 109.46835 * 29.72191 * 6 5 4 37 37 H 1.08999 * 109.46594 * 204.99653 * 8 7 5 38 38 H 1.08992 * 109.47308 * 325.00005 * 8 7 5 39 39 H 1.09002 * 109.47263 * 186.13919 * 14 12 11 40 40 H 1.09004 * 109.46794 * 306.13603 * 14 12 11 41 41 H 1.08995 * 109.47181 * 66.13298 * 14 12 11 42 42 H 1.08997 * 109.46851 * 84.82385 * 18 17 15 43 43 H 1.09000 * 109.47492 * 204.82798 * 18 17 15 44 44 H 1.09005 * 109.46960 * 324.82230 * 18 17 15 45 45 H 1.08995 * 109.47348 * 209.99762 * 19 17 15 46 46 H 1.09003 * 109.46681 * 329.99872 * 19 17 15 47 47 H 0.96998 * 119.99528 * 180.02562 * 23 22 20 48 48 H 1.07995 * 119.99888 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0048 5 6 4.2717 0.0001 -0.0006 6 6 5.7787 0.0001 -0.0006 7 6 3.5807 -1.1969 -0.0001 8 6 4.3343 -2.5019 0.0004 9 6 4.6927 -2.8745 1.4159 10 8 4.3698 -2.1539 2.3305 11 8 5.3707 -4.0068 1.6607 12 6 5.6822 -4.3018 3.0479 13 1 4.9095 -3.8810 3.6912 14 6 7.0362 -3.6875 3.4084 15 6 5.7401 -5.7951 3.2430 16 8 5.8305 -6.5291 2.2820 17 7 5.6915 -6.3146 4.4857 18 6 5.4644 -5.4384 5.6376 19 6 5.8657 -7.7556 4.6846 20 6 7.3274 -8.0617 4.8862 21 1 8.0540 -7.2627 4.8684 22 6 7.7374 -9.3618 5.0933 23 7 6.8526 -10.3346 5.1154 24 14 9.5491 -9.7412 5.3439 25 1 9.8741 -9.6706 6.7912 26 1 9.8441 -11.1052 4.8363 27 1 10.3697 -8.7493 4.6035 28 6 2.1982 -1.1969 0.0005 29 1 -0.3633 0.0004 1.0276 30 1 -0.3634 0.8898 -0.5142 31 1 -0.3633 -0.8902 -0.5135 32 1 1.6582 2.1327 0.0004 33 1 4.1204 2.1328 0.0090 34 1 6.1420 -0.0002 -1.0283 35 1 6.1421 -0.8897 0.5135 36 1 6.1420 0.8903 0.5130 37 1 3.7093 -3.2824 -0.4336 38 1 5.2449 -2.3959 -0.5891 39 1 7.3209 -3.9996 4.4133 40 1 7.7894 -4.0247 2.6962 41 1 6.9632 -2.6006 3.3725 42 1 4.3937 -5.2832 5.7705 43 1 5.8784 -5.9012 6.5334 44 1 5.9522 -4.4788 5.4660 45 1 5.3037 -8.0717 5.5634 46 1 5.5001 -8.2901 3.8078 47 1 7.1410 -11.2491 5.2615 48 1 1.6582 -2.1322 0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728114397.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:27 Heat of formation + Delta-G solvation = -104.884697 kcal Electronic energy + Delta-G solvation = -28494.280739 eV Core-core repulsion = 24514.130685 eV Total energy + Delta-G solvation = -3980.150054 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.89132 -39.78128 -38.81789 -36.41497 -34.89304 -34.49483 -32.92047 -32.65866 -31.54935 -29.54787 -28.42245 -27.78059 -26.07087 -25.08787 -24.46198 -23.07383 -22.28335 -21.19369 -19.99209 -18.80452 -17.88341 -16.74975 -16.62894 -16.48794 -16.03592 -15.81891 -15.63622 -15.15661 -14.93439 -14.62864 -14.31157 -14.04181 -13.67110 -13.50027 -13.45346 -13.09155 -13.06764 -12.95949 -12.74037 -12.36591 -12.33877 -12.18893 -12.09867 -12.06882 -11.75539 -11.72103 -11.40617 -11.24525 -11.20779 -11.18983 -10.93941 -10.70394 -10.59165 -10.50805 -10.19137 -9.67468 -9.03724 -8.91071 -8.61534 -8.46946 -7.73152 -6.07780 -4.13137 1.04137 1.17046 2.17499 2.54293 3.23178 3.28162 3.35161 3.39679 3.50503 3.93534 4.30586 4.41179 4.49113 4.62639 4.74085 4.75804 4.88369 4.92268 4.95711 5.06164 5.11746 5.16891 5.25119 5.26830 5.30645 5.34256 5.37946 5.47327 5.50962 5.52818 5.68281 5.68446 5.73149 5.85811 5.86567 5.98046 6.07639 6.19520 6.23425 6.35202 6.40000 6.45367 6.79515 6.97944 7.38678 7.45671 7.74545 7.88336 8.17949 8.28369 8.82460 8.97611 9.51986 11.00338 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.024410 B = 0.002267 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.777055 B =12347.234578 C =12763.500781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.093 4.093 3 C -0.114 4.114 4 C -0.117 4.117 5 C -0.071 4.071 6 C -0.119 4.119 7 C -0.071 4.071 8 C -0.076 4.076 9 C 0.460 3.540 10 O -0.501 6.501 11 O -0.327 6.327 12 C 0.071 3.929 13 H 0.102 0.898 14 C -0.164 4.164 15 C 0.510 3.490 16 O -0.521 6.521 17 N -0.597 5.597 18 C 0.074 3.926 19 C 0.245 3.755 20 C -0.529 4.529 21 H 0.058 0.942 22 C 0.061 3.939 23 N -0.893 5.893 24 Si 0.899 3.101 25 H -0.280 1.280 26 H -0.285 1.285 27 H -0.274 1.274 28 C -0.100 4.100 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.121 0.879 33 H 0.122 0.878 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.116 0.884 38 H 0.117 0.883 39 H 0.086 0.914 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.047 0.953 43 H 0.081 0.919 44 H 0.059 0.941 45 H 0.036 0.964 46 H 0.046 0.954 47 H 0.264 0.736 48 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.404 23.725 -9.171 26.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.093 4.093 3 C -0.132 4.132 4 C -0.135 4.135 5 C -0.071 4.071 6 C -0.175 4.175 7 C -0.072 4.072 8 C -0.113 4.113 9 C 0.303 3.697 10 O -0.389 6.389 11 O -0.242 6.242 12 C 0.012 3.988 13 H 0.120 0.880 14 C -0.222 4.222 15 C 0.294 3.706 16 O -0.396 6.396 17 N -0.330 5.330 18 C -0.070 4.070 19 C 0.127 3.873 20 C -0.568 4.568 21 H 0.076 0.924 22 C -0.141 4.141 23 N -0.532 5.532 24 Si 0.727 3.273 25 H -0.206 1.206 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.118 4.118 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.139 0.861 33 H 0.140 0.860 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.134 0.866 38 H 0.135 0.865 39 H 0.105 0.895 40 H 0.094 0.906 41 H 0.087 0.913 42 H 0.066 0.934 43 H 0.099 0.901 44 H 0.077 0.923 45 H 0.054 0.946 46 H 0.064 0.936 47 H 0.074 0.926 48 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -8.458 23.291 -9.346 26.483 hybrid contribution 0.988 -0.225 0.497 1.129 sum -7.469 23.065 -8.849 25.809 Atomic orbital electron populations 1.20781 0.91140 1.02676 1.02412 1.19846 0.96074 0.93003 1.00369 1.21011 0.94150 0.97447 1.00616 1.20954 0.94147 0.97280 1.01101 1.19701 0.95949 0.92531 0.98931 1.20852 0.91281 1.03095 1.02298 1.19103 0.93419 0.92831 1.01803 1.20317 1.03021 0.96481 0.91489 1.23592 0.74690 0.79022 0.92430 1.90665 1.50834 1.50849 1.46526 1.86631 1.67238 1.40407 1.29962 1.22658 0.99681 0.95583 0.80859 0.88046 1.22155 0.95282 1.00973 1.03747 1.19769 0.78554 0.88070 0.84176 1.90689 1.48552 1.60862 1.39520 1.48082 1.69673 1.10905 1.04371 1.21831 1.00095 0.94371 0.90726 1.19371 0.97040 0.72773 0.98147 1.21423 0.92603 0.93112 1.49664 0.92367 1.24944 0.98000 0.96010 0.95151 1.69935 1.33662 1.00199 1.49413 0.86479 0.84862 0.77773 0.78208 1.20607 1.21041 1.19865 1.20888 0.93126 0.97898 0.99865 0.91155 0.91630 0.91514 0.86145 0.86004 0.90819 0.91738 0.91255 0.86565 0.86533 0.89505 0.90641 0.91325 0.93444 0.90067 0.92262 0.94636 0.93564 0.92640 0.85951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 10.01 36.01 0.36 -0.43 16 2 C -0.09 -0.88 5.88 -104.62 -0.62 -1.49 16 3 C -0.11 -1.02 9.70 -39.58 -0.38 -1.41 16 4 C -0.12 -1.08 9.70 -39.58 -0.38 -1.47 16 5 C -0.07 -0.73 5.88 -104.62 -0.62 -1.34 16 6 C -0.12 -1.01 9.22 36.01 0.33 -0.68 16 7 C -0.07 -0.77 4.37 -104.63 -0.46 -1.23 16 8 C -0.08 -0.79 5.26 -29.03 -0.15 -0.94 16 9 C 0.46 6.52 7.15 36.01 0.26 6.77 16 10 O -0.50 -7.99 15.25 -18.75 -0.29 -8.27 16 11 O -0.33 -5.46 9.47 -45.73 -0.43 -5.89 16 12 C 0.07 1.20 2.14 -27.88 -0.06 1.14 16 13 H 0.10 1.60 6.31 -51.93 -0.33 1.27 16 14 C -0.16 -2.37 9.19 37.16 0.34 -2.03 16 15 C 0.51 11.04 6.95 -10.98 -0.08 10.97 16 16 O -0.52 -13.55 16.13 -13.53 -0.22 -13.77 16 17 N -0.60 -12.80 2.86 -182.95 -0.52 -13.33 16 18 C 0.07 1.18 9.79 59.85 0.59 1.77 16 19 C 0.25 6.41 5.18 -5.19 -0.03 6.39 16 20 C -0.53 -14.84 9.39 -34.44 -0.32 -15.17 16 21 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 22 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 23 N -0.89 -26.40 13.29 55.43 0.74 -25.66 16 24 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 27 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 28 C -0.10 -1.03 9.34 -39.59 -0.37 -1.40 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.37 8.09 -51.93 -0.42 -0.05 16 31 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 32 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 33 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.61 6.16 -51.93 -0.32 0.29 16 36 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 37 H 0.12 1.03 8.05 -51.93 -0.42 0.62 16 38 H 0.12 0.99 6.99 -51.93 -0.36 0.63 16 39 H 0.09 1.20 6.33 -51.93 -0.33 0.87 16 40 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.08 1.30 8.03 -51.93 -0.42 0.88 16 44 H 0.06 0.80 4.92 -51.93 -0.26 0.54 16 45 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 46 H 0.05 1.36 7.36 -51.93 -0.38 0.98 16 47 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 48 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 LS Contribution 399.94 15.07 6.03 6.03 Total: -1.00 -35.13 399.94 -8.82 -43.95 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -7.42 Total: -0.78 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: -1.68 Total: 1.09 kcal Atomic # 7 Polarization: -39.20 SS G_CDS: 0.21 Total: -38.99 kcal Atomic # 8 Polarization: -26.99 SS G_CDS: -0.94 Total: -27.93 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -35.13 -8.82 -43.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728114397.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.938 kcal (2) G-P(sol) polarization free energy of solvation -35.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds