Wall clock time and date at job start Tue Mar 31 2020 17:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38259 * 119.99752 * 2 1 4 4 C 1.38215 * 119.99782 * 179.76972 * 3 2 1 5 5 C 1.38253 * 119.99824 * 0.48704 * 4 3 2 6 6 C 1.50704 * 119.99983 * 179.76972 * 5 4 3 7 7 C 1.38214 * 120.00226 * 359.49146 * 5 4 3 8 8 C 1.50700 * 119.99792 * 180.27770 * 7 5 4 9 9 C 1.50703 * 109.47215 * 85.00068 * 8 7 5 10 10 O 1.20827 * 119.99604 * 359.97438 * 9 8 7 11 11 O 1.34223 * 120.00169 * 179.97438 * 9 8 7 12 12 C 1.45198 * 117.00271 * 179.97438 * 11 9 8 13 13 H 1.09001 * 109.46760 * 30.00297 * 12 11 9 14 14 C 1.52997 * 109.47530 * 270.00733 * 12 11 9 15 15 C 1.50705 * 109.46958 * 150.00477 * 12 11 9 16 16 O 1.21269 * 120.00155 * 16.03102 * 15 12 11 17 17 N 1.34777 * 119.99461 * 196.02997 * 15 12 11 18 18 C 1.46497 * 120.00512 * 5.36229 * 17 15 12 19 19 C 1.46507 * 119.99754 * 185.36567 * 17 15 12 20 20 C 1.50701 * 109.47188 * 89.99746 * 19 17 15 21 21 H 1.08007 * 119.99833 * 0.02562 * 20 19 17 22 22 C 1.37877 * 120.00193 * 180.02562 * 20 19 17 23 23 N 1.31517 * 119.99692 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00211 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47472 * 89.99746 * 24 22 20 26 26 H 1.48501 * 109.47328 * 209.99802 * 24 22 20 27 27 H 1.48504 * 109.47354 * 329.99927 * 24 22 20 28 28 C 1.38213 * 120.00300 * 179.97438 * 2 1 3 29 29 H 1.08997 * 109.47155 * 270.02279 * 1 2 3 30 30 H 1.09000 * 109.47319 * 30.02136 * 1 2 3 31 31 H 1.09003 * 109.46835 * 150.02132 * 1 2 3 32 32 H 1.08002 * 120.00089 * 0.02562 * 3 2 1 33 33 H 1.08007 * 119.99684 * 180.25708 * 4 3 2 34 34 H 1.09003 * 109.46728 * 269.72606 * 6 5 4 35 35 H 1.08994 * 109.47388 * 149.72618 * 6 5 4 36 36 H 1.09003 * 109.46835 * 29.72191 * 6 5 4 37 37 H 1.08999 * 109.46594 * 204.99653 * 8 7 5 38 38 H 1.08992 * 109.47308 * 325.00005 * 8 7 5 39 39 H 1.09002 * 109.47263 * 186.13919 * 14 12 11 40 40 H 1.09004 * 109.46794 * 306.13603 * 14 12 11 41 41 H 1.08995 * 109.47181 * 66.13298 * 14 12 11 42 42 H 1.08997 * 109.46851 * 84.82385 * 18 17 15 43 43 H 1.09000 * 109.47492 * 204.82798 * 18 17 15 44 44 H 1.09005 * 109.46960 * 324.82230 * 18 17 15 45 45 H 1.08995 * 109.47348 * 209.99762 * 19 17 15 46 46 H 1.09003 * 109.46681 * 329.99872 * 19 17 15 47 47 H 0.96998 * 119.99528 * 180.02562 * 23 22 20 48 48 H 1.07995 * 119.99888 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0048 5 6 4.2717 0.0001 -0.0006 6 6 5.7787 0.0001 -0.0006 7 6 3.5807 -1.1969 -0.0001 8 6 4.3343 -2.5019 0.0004 9 6 4.6927 -2.8745 1.4159 10 8 4.3698 -2.1539 2.3305 11 8 5.3707 -4.0068 1.6607 12 6 5.6822 -4.3018 3.0479 13 1 4.9095 -3.8810 3.6912 14 6 7.0362 -3.6875 3.4084 15 6 5.7401 -5.7951 3.2430 16 8 5.8305 -6.5291 2.2820 17 7 5.6915 -6.3146 4.4857 18 6 5.4644 -5.4384 5.6376 19 6 5.8657 -7.7556 4.6846 20 6 7.3274 -8.0617 4.8862 21 1 8.0540 -7.2627 4.8684 22 6 7.7374 -9.3618 5.0933 23 7 6.8526 -10.3346 5.1154 24 14 9.5491 -9.7412 5.3439 25 1 9.8741 -9.6706 6.7912 26 1 9.8441 -11.1052 4.8363 27 1 10.3697 -8.7493 4.6035 28 6 2.1982 -1.1969 0.0005 29 1 -0.3633 0.0004 1.0276 30 1 -0.3634 0.8898 -0.5142 31 1 -0.3633 -0.8902 -0.5135 32 1 1.6582 2.1327 0.0004 33 1 4.1204 2.1328 0.0090 34 1 6.1420 -0.0002 -1.0283 35 1 6.1421 -0.8897 0.5135 36 1 6.1420 0.8903 0.5130 37 1 3.7093 -3.2824 -0.4336 38 1 5.2449 -2.3959 -0.5891 39 1 7.3209 -3.9996 4.4133 40 1 7.7894 -4.0247 2.6962 41 1 6.9632 -2.6006 3.3725 42 1 4.3937 -5.2832 5.7705 43 1 5.8784 -5.9012 6.5334 44 1 5.9522 -4.4788 5.4660 45 1 5.3037 -8.0717 5.5634 46 1 5.5001 -8.2901 3.8078 47 1 7.1410 -11.2491 5.2615 48 1 1.6582 -2.1322 0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728114397.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:26 Heat of formation + Delta-G solvation = -123.598019 kcal Electronic energy + Delta-G solvation = -28495.092209 eV Core-core repulsion = 24514.130685 eV Total energy + Delta-G solvation = -3980.961524 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.05150 -40.85244 -40.16202 -37.66978 -36.70189 -35.20864 -34.86315 -33.57679 -32.88846 -30.14810 -29.76137 -29.18092 -27.59684 -26.09266 -25.66686 -24.58725 -23.28217 -22.25976 -20.83754 -20.39587 -19.06502 -18.70209 -18.15475 -17.58824 -17.38689 -16.82417 -16.64391 -16.62334 -16.17090 -16.01333 -15.68732 -14.88530 -14.85710 -14.61187 -14.35640 -14.12721 -14.09674 -13.87908 -13.77868 -13.65656 -13.58265 -13.53036 -13.35180 -13.15487 -13.01954 -12.83299 -12.75303 -12.67196 -12.51687 -12.38944 -12.21891 -11.95510 -11.87335 -11.84944 -11.73733 -11.66344 -10.65306 -10.64695 -9.74825 -9.54381 -9.30033 -8.23811 -6.38752 0.30065 0.46774 1.06613 1.35645 1.37530 1.40534 1.50040 1.58768 2.31724 2.42980 2.82399 3.06382 3.38090 3.50533 3.66786 3.79259 3.83971 3.86953 3.99780 4.10643 4.23733 4.26308 4.32631 4.47607 4.51840 4.55834 4.58040 4.61777 4.70062 4.78417 4.82137 4.83455 4.83908 4.89241 4.92955 5.05555 5.12045 5.17504 5.19184 5.32750 5.36412 5.50276 5.50491 5.67377 5.70091 5.76991 6.02028 6.12570 6.51260 6.65025 6.70016 7.17769 7.34596 8.83863 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.024410 B = 0.002267 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.777055 B =12347.234578 C =12763.500781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.104 4.104 3 C -0.120 4.120 4 C -0.125 4.125 5 C -0.085 4.085 6 C -0.118 4.118 7 C -0.089 4.089 8 C -0.071 4.071 9 C 0.463 3.537 10 O -0.519 6.519 11 O -0.345 6.345 12 C 0.081 3.919 13 H 0.118 0.882 14 C -0.158 4.158 15 C 0.501 3.499 16 O -0.577 6.577 17 N -0.601 5.601 18 C 0.067 3.933 19 C 0.258 3.742 20 C -0.544 4.544 21 H 0.058 0.942 22 C 0.007 3.993 23 N -0.928 5.928 24 Si 0.970 3.030 25 H -0.263 1.263 26 H -0.282 1.282 27 H -0.271 1.271 28 C -0.118 4.118 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.142 0.858 33 H 0.142 0.858 34 H 0.089 0.911 35 H 0.052 0.948 36 H 0.077 0.923 37 H 0.129 0.871 38 H 0.136 0.864 39 H 0.095 0.905 40 H 0.066 0.934 41 H 0.093 0.907 42 H 0.071 0.929 43 H 0.081 0.919 44 H 0.090 0.910 45 H 0.030 0.970 46 H 0.000 1.000 47 H 0.268 0.732 48 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.737 26.238 -8.872 28.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.104 4.104 3 C -0.137 4.137 4 C -0.143 4.143 5 C -0.085 4.085 6 C -0.174 4.174 7 C -0.089 4.089 8 C -0.108 4.108 9 C 0.307 3.693 10 O -0.407 6.407 11 O -0.261 6.261 12 C 0.023 3.977 13 H 0.135 0.865 14 C -0.215 4.215 15 C 0.288 3.712 16 O -0.457 6.457 17 N -0.333 5.333 18 C -0.075 4.075 19 C 0.137 3.863 20 C -0.582 4.582 21 H 0.076 0.924 22 C -0.192 4.192 23 N -0.568 5.568 24 Si 0.794 3.206 25 H -0.188 1.188 26 H -0.208 1.208 27 H -0.196 1.196 28 C -0.136 4.136 29 H 0.089 0.911 30 H 0.099 0.901 31 H 0.089 0.911 32 H 0.160 0.840 33 H 0.159 0.841 34 H 0.108 0.892 35 H 0.071 0.929 36 H 0.096 0.904 37 H 0.147 0.853 38 H 0.154 0.846 39 H 0.113 0.887 40 H 0.085 0.915 41 H 0.112 0.888 42 H 0.089 0.911 43 H 0.100 0.900 44 H 0.109 0.891 45 H 0.048 0.952 46 H 0.018 0.982 47 H 0.077 0.923 48 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -7.807 25.852 -9.014 28.470 hybrid contribution 0.679 -0.954 0.385 1.233 sum -7.128 24.898 -8.628 27.298 Atomic orbital electron populations 1.20814 0.89644 1.03670 1.02740 1.20179 0.97372 0.92926 0.99966 1.21349 0.94368 0.98224 0.99792 1.21270 0.94563 0.97840 1.00600 1.19981 0.96868 0.92710 0.98973 1.20875 0.90348 1.02893 1.03285 1.19218 0.93713 0.93045 1.02899 1.20441 1.04156 0.96957 0.89281 1.24262 0.73558 0.77840 0.93658 1.90643 1.51507 1.51187 1.47403 1.86649 1.67965 1.41840 1.29637 1.22507 1.01704 0.91698 0.81822 0.86488 1.22155 0.93297 1.02231 1.03819 1.20639 0.77086 0.90133 0.83310 1.90650 1.51070 1.62723 1.41243 1.48074 1.69177 1.09794 1.06260 1.22142 1.02144 0.94553 0.88616 1.18876 0.96182 0.75603 0.95593 1.21687 0.93343 0.93489 1.49717 0.92355 1.25885 1.02870 0.95806 0.94645 1.70057 1.35952 1.00674 1.50081 0.85380 0.78866 0.77415 0.78945 1.18765 1.20770 1.19555 1.21109 0.93353 0.98656 1.00463 0.91051 0.90129 0.91106 0.83998 0.84054 0.89234 0.92912 0.90410 0.85286 0.84623 0.88683 0.91540 0.88849 0.91065 0.90026 0.89147 0.95221 0.98171 0.92348 0.85610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.39 10.01 71.24 0.71 -0.68 16 2 C -0.10 -1.83 5.88 -19.86 -0.12 -1.95 16 3 C -0.12 -1.91 9.70 22.27 0.22 -1.70 16 4 C -0.12 -2.08 9.70 22.27 0.22 -1.86 16 5 C -0.09 -1.61 5.88 -19.87 -0.12 -1.73 16 6 C -0.12 -1.80 9.22 71.24 0.66 -1.14 16 7 C -0.09 -1.83 4.37 -19.87 -0.09 -1.91 16 8 C -0.07 -1.43 5.26 29.10 0.15 -1.28 16 9 C 0.46 12.71 7.15 71.24 0.51 13.21 16 10 O -0.52 -15.90 15.25 21.96 0.33 -15.56 16 11 O -0.34 -11.38 9.47 -45.14 -0.43 -11.81 16 12 C 0.08 2.67 2.14 29.85 0.06 2.74 16 13 H 0.12 3.49 6.31 -2.39 -0.02 3.47 16 14 C -0.16 -4.26 9.19 71.98 0.66 -3.60 16 15 C 0.50 22.07 6.95 87.66 0.61 22.68 16 16 O -0.58 -31.36 16.13 15.26 0.25 -31.11 16 17 N -0.60 -26.03 2.86 -851.12 -2.43 -28.46 16 18 C 0.07 2.05 9.79 127.77 1.25 3.30 16 19 C 0.26 14.00 5.18 85.63 0.44 14.45 16 20 C -0.54 -31.02 9.39 25.60 0.24 -30.78 16 21 H 0.06 3.25 7.81 -2.91 -0.02 3.22 16 22 C 0.01 0.40 5.46 84.65 0.46 0.87 16 23 N -0.93 -55.96 13.29 21.45 0.28 -55.67 16 24 Si 0.97 44.42 29.54 68.60 2.03 46.44 16 25 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 26 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 27 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 28 C -0.12 -2.36 9.34 22.27 0.21 -2.15 16 29 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.08 0.74 8.09 -2.39 -0.02 0.72 16 31 H 0.07 0.80 8.09 -2.39 -0.02 0.78 16 32 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 33 H 0.14 1.68 8.06 -2.91 -0.02 1.65 16 34 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.05 0.92 6.16 -2.39 -0.01 0.91 16 36 H 0.08 1.03 8.08 -2.39 -0.02 1.01 16 37 H 0.13 2.21 8.05 -2.39 -0.02 2.19 16 38 H 0.14 2.15 6.99 -2.39 -0.02 2.13 16 39 H 0.09 2.39 6.33 -2.39 -0.02 2.38 16 40 H 0.07 1.92 8.14 -2.39 -0.02 1.91 16 41 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 42 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.08 2.49 8.03 -2.39 -0.02 2.48 16 44 H 0.09 2.19 4.92 -2.38 -0.01 2.18 16 45 H 0.03 1.62 8.07 -2.39 -0.02 1.60 16 46 H 0.00 0.01 7.36 -2.39 -0.02 -0.01 16 47 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 48 H 0.13 2.27 8.06 -2.91 -0.02 2.24 16 Total: -1.00 -78.33 399.94 7.07 -71.26 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: 0.95 Total: 16.45 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: 6.08 Total: 8.47 kcal Atomic # 7 Polarization: -81.99 SS G_CDS: -2.15 Total: -84.13 kcal Atomic # 8 Polarization: -58.64 SS G_CDS: 0.15 Total: -58.49 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.44 kcal Total: -78.33 7.07 -71.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728114397.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.340 kcal (2) G-P(sol) polarization free energy of solvation -78.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds