Wall clock time and date at job start Tue Mar 31 2020 17:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38264 * 119.99975 * 2 1 4 4 C 1.38207 * 119.99832 * 180.27763 * 3 2 1 5 5 C 1.38256 * 120.00234 * 359.74871 * 4 3 2 6 6 C 1.38212 * 119.99869 * 359.97438 * 5 4 3 7 7 C 1.38214 * 120.00372 * 179.75128 * 2 1 3 8 8 C 1.50703 * 119.99801 * 359.97438 * 7 2 1 9 9 C 1.52996 * 109.47402 * 84.72710 * 8 7 2 10 10 C 1.50690 * 109.47602 * 180.02562 * 9 8 7 11 11 O 1.20835 * 119.99848 * 359.97438 * 10 9 8 12 12 O 1.34228 * 120.00597 * 180.02562 * 10 9 8 13 13 C 1.45198 * 117.00315 * 180.02562 * 12 10 9 14 14 H 1.08992 * 109.47190 * 30.00040 * 13 12 10 15 15 C 1.53008 * 109.46767 * 269.99870 * 13 12 10 16 16 C 1.50700 * 109.47249 * 150.00443 * 13 12 10 17 17 O 1.21281 * 119.99959 * 16.01589 * 16 13 12 18 18 N 1.34778 * 119.99806 * 196.02758 * 16 13 12 19 19 C 1.46494 * 120.00128 * 5.36099 * 18 16 13 20 20 C 1.46499 * 119.99700 * 185.35729 * 18 16 13 21 21 C 1.50702 * 109.46860 * 89.99917 * 20 18 16 22 22 H 1.07999 * 120.00293 * 0.02562 * 21 20 18 23 23 C 1.37886 * 120.00009 * 179.97438 * 21 20 18 24 24 N 1.31515 * 119.99573 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99940 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47239 * 0.02562 * 25 23 21 27 27 H 1.48493 * 109.46705 * 120.00367 * 25 23 21 28 28 H 1.48502 * 109.47091 * 240.00102 * 25 23 21 29 29 H 1.09007 * 109.46799 * 270.25010 * 1 2 3 30 30 H 1.08996 * 109.47292 * 30.24947 * 1 2 3 31 31 H 1.09003 * 109.47074 * 150.25794 * 1 2 3 32 32 H 1.07995 * 119.99878 * 0.04208 * 3 2 1 33 33 H 1.08002 * 119.99866 * 179.76449 * 4 3 2 34 34 H 1.08004 * 120.00212 * 179.97438 * 5 4 3 35 35 H 1.08000 * 119.99961 * 180.02562 * 6 5 4 36 36 H 1.09003 * 109.47169 * 324.72809 * 8 7 2 37 37 H 1.09002 * 109.47315 * 204.73252 * 8 7 2 38 38 H 1.09003 * 109.46877 * 59.99921 * 9 8 7 39 39 H 1.09002 * 109.47329 * 300.00534 * 9 8 7 40 40 H 1.09003 * 109.47298 * 66.14029 * 15 13 12 41 41 H 1.08997 * 109.47061 * 306.13670 * 15 13 12 42 42 H 1.09000 * 109.46859 * 186.13817 * 15 13 12 43 43 H 1.08998 * 109.47479 * 84.82343 * 19 18 16 44 44 H 1.09002 * 109.47016 * 204.82429 * 19 18 16 45 45 H 1.09000 * 109.46810 * 324.81906 * 19 18 16 46 46 H 1.09003 * 109.47348 * 209.99678 * 20 18 16 47 47 H 1.09008 * 109.47508 * 330.00271 * 20 18 16 48 48 H 0.96998 * 119.99687 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 -0.0058 5 6 4.2717 0.0001 -0.0064 6 6 3.5806 -1.1969 -0.0006 7 6 2.1981 -1.1969 0.0052 8 6 1.4447 -2.5020 0.0114 9 6 1.0743 -2.8840 -1.4230 10 6 0.3203 -4.1888 -1.4168 11 8 0.1020 -4.7553 -0.3721 12 8 -0.1079 -4.7221 -2.5717 13 6 -0.8278 -5.9804 -2.4899 14 1 -1.3571 -6.0350 -1.5387 15 6 0.1628 -7.1422 -2.5898 16 6 -1.8189 -6.0667 -3.6219 17 8 -1.7204 -5.3198 -4.5723 18 7 -2.8148 -6.9737 -3.5779 19 6 -3.0052 -7.7951 -2.3799 20 6 -3.7069 -7.1382 -4.7283 21 6 -3.1398 -8.1791 -5.6589 22 1 -2.2083 -8.6693 -5.4175 23 6 -3.8108 -8.5063 -6.8182 24 7 -4.9454 -7.9096 -7.1120 25 14 -3.1074 -9.7959 -7.9721 26 1 -1.8303 -10.3125 -7.4177 27 1 -4.0741 -10.9144 -8.1124 28 1 -2.8591 -9.1864 -9.3033 29 1 -0.3633 0.0045 1.0277 30 1 -0.3634 0.8877 -0.5177 31 1 -0.3633 -0.8923 -0.5098 32 1 1.6583 2.1327 0.0007 33 1 4.1203 2.1327 -0.0096 34 1 5.3517 0.0000 -0.0113 35 1 4.1206 -2.1322 -0.0006 36 1 0.5366 -2.3945 0.6048 37 1 2.0715 -3.2814 0.4447 38 1 1.9823 -2.9916 -2.0163 39 1 0.4474 -2.1046 -1.8563 40 1 0.8109 -7.1435 -1.7133 41 1 0.7680 -7.0273 -3.4890 42 1 -0.3847 -8.0834 -2.6381 43 1 -3.6091 -7.2476 -1.6563 44 1 -3.5131 -8.7206 -2.6509 45 1 -2.0349 -8.0281 -1.9413 46 1 -4.6904 -7.4570 -4.3827 47 1 -3.7974 -6.1891 -5.2566 48 1 -5.4172 -8.1396 -7.9277 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000729013959.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:20 Heat of formation + Delta-G solvation = -107.096659 kcal Electronic energy + Delta-G solvation = -28023.880739 eV Core-core repulsion = 24043.634767 eV Total energy + Delta-G solvation = -3980.245972 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.78840 -39.86059 -38.92470 -36.54058 -34.89972 -34.59059 -32.87073 -32.74028 -31.67162 -30.17931 -27.80726 -27.33936 -26.10221 -25.47830 -24.20416 -22.63402 -22.18818 -21.02673 -20.39058 -18.82073 -17.95862 -16.78075 -16.66594 -16.55706 -16.47433 -15.84081 -15.75534 -15.21287 -14.98386 -14.67833 -14.37279 -14.09287 -13.94073 -13.48299 -13.31942 -13.25145 -13.08097 -12.87139 -12.57521 -12.46380 -12.33120 -12.14910 -12.08986 -12.05454 -11.74470 -11.61226 -11.41893 -11.25604 -11.17418 -11.10879 -10.91894 -10.71891 -10.60442 -10.51775 -10.19614 -9.65956 -9.10393 -8.92990 -8.86048 -8.47562 -7.73476 -6.08246 -4.13502 1.02013 1.09089 2.14545 2.49915 3.22647 3.27601 3.35568 3.39549 3.44690 3.87957 4.39179 4.42324 4.48318 4.63991 4.65019 4.69024 4.81301 4.82349 4.92286 5.01427 5.07951 5.11110 5.18276 5.24075 5.26466 5.34871 5.37040 5.52236 5.55218 5.56359 5.67714 5.68416 5.73424 5.83203 5.85171 5.94310 6.07371 6.19178 6.21733 6.23125 6.36817 6.44676 6.71959 6.97414 7.38290 7.45397 7.70950 7.88000 8.17585 8.27897 8.82241 8.97371 9.51680 10.99889 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.022615 B = 0.002028 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.825077 B =13802.743997 C =13900.116618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.078 4.078 3 C -0.120 4.120 4 C -0.120 4.120 5 C -0.126 4.126 6 C -0.110 4.110 7 C -0.085 4.085 8 C -0.069 4.069 9 C -0.110 4.110 10 C 0.460 3.540 11 O -0.513 6.513 12 O -0.326 6.326 13 C 0.070 3.930 14 H 0.102 0.898 15 C -0.164 4.164 16 C 0.509 3.491 17 O -0.521 6.521 18 N -0.597 5.597 19 C 0.074 3.926 20 C 0.245 3.755 21 C -0.529 4.529 22 H 0.059 0.941 23 C 0.061 3.939 24 N -0.893 5.893 25 Si 0.899 3.101 26 H -0.273 1.273 27 H -0.283 1.283 28 H -0.282 1.282 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.121 0.879 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.123 0.877 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.086 0.914 43 H 0.047 0.953 44 H 0.080 0.920 45 H 0.059 0.941 46 H 0.036 0.964 47 H 0.046 0.954 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.797 13.428 17.886 26.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.078 4.078 3 C -0.138 4.138 4 C -0.138 4.138 5 C -0.144 4.144 6 C -0.128 4.128 7 C -0.085 4.085 8 C -0.107 4.107 9 C -0.147 4.147 10 C 0.303 3.697 11 O -0.401 6.401 12 O -0.241 6.241 13 C 0.012 3.988 14 H 0.120 0.880 15 C -0.222 4.222 16 C 0.294 3.706 17 O -0.396 6.396 18 N -0.330 5.330 19 C -0.070 4.070 20 C 0.126 3.874 21 C -0.568 4.568 22 H 0.077 0.923 23 C -0.141 4.141 24 N -0.532 5.532 25 Si 0.727 3.273 26 H -0.198 1.198 27 H -0.209 1.209 28 H -0.208 1.208 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.139 0.861 33 H 0.138 0.862 34 H 0.139 0.861 35 H 0.141 0.859 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.127 0.873 39 H 0.127 0.873 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.105 0.895 43 H 0.066 0.934 44 H 0.099 0.901 45 H 0.077 0.923 46 H 0.054 0.946 47 H 0.064 0.936 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 14.587 13.625 17.512 26.554 hybrid contribution 0.324 -0.874 -0.591 1.103 sum 14.911 12.751 16.922 25.909 Atomic orbital electron populations 1.20923 0.91120 1.03271 1.02654 1.19833 0.96134 0.92599 0.99250 1.21043 0.94293 0.97470 1.00982 1.21141 0.94333 0.98082 1.00207 1.21126 0.99867 0.92518 1.00845 1.21080 0.93501 0.98315 0.99927 1.19670 0.93656 0.94184 1.00951 1.20412 1.01133 0.94182 0.94942 1.21397 1.01445 0.92306 0.99573 1.23789 0.76959 0.87040 0.81865 1.90643 1.54383 1.62287 1.32836 1.86641 1.65943 1.37323 1.34223 1.22666 0.93529 0.82276 1.00365 0.87999 1.22157 0.99407 0.97064 1.03537 1.19779 0.81869 0.81849 0.87130 1.90695 1.72804 1.41569 1.34545 1.48080 1.31052 1.36251 1.17638 1.21830 1.01174 0.96474 0.87541 1.19375 0.87815 0.98386 0.81784 1.21465 1.07910 1.21694 1.05693 0.92302 1.24951 0.94900 0.96689 0.97607 1.69944 1.15538 1.42177 1.25534 0.86424 0.78994 0.81074 0.80820 1.19778 1.20940 1.20819 0.90910 0.91282 0.91036 0.86069 0.86188 0.86123 0.85914 0.89671 0.89894 0.87316 0.87310 0.91292 0.90656 0.89504 0.93433 0.90074 0.92256 0.94623 0.93566 0.92694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.91 9.22 36.00 0.33 -0.58 16 2 C -0.08 -0.67 5.88 -104.62 -0.62 -1.28 16 3 C -0.12 -0.94 9.70 -39.58 -0.38 -1.33 16 4 C -0.12 -0.89 10.05 -39.59 -0.40 -1.29 16 5 C -0.13 -0.95 10.05 -39.58 -0.40 -1.34 16 6 C -0.11 -0.89 9.68 -39.59 -0.38 -1.28 16 7 C -0.08 -0.74 5.13 -104.62 -0.54 -1.27 16 8 C -0.07 -0.62 3.94 -27.88 -0.11 -0.73 16 9 C -0.11 -1.07 5.60 -27.89 -0.16 -1.23 16 10 C 0.46 6.23 7.93 36.00 0.29 6.52 16 11 O -0.51 -7.63 15.20 -18.76 -0.29 -7.92 16 12 O -0.33 -5.39 9.47 -45.74 -0.43 -5.83 16 13 C 0.07 1.18 2.14 -27.88 -0.06 1.12 16 14 H 0.10 1.56 6.31 -51.93 -0.33 1.24 16 15 C -0.16 -2.35 9.19 37.16 0.34 -2.01 16 16 C 0.51 10.98 6.95 -10.98 -0.08 10.90 16 17 O -0.52 -13.53 16.13 -13.54 -0.22 -13.75 16 18 N -0.60 -12.72 2.86 -182.95 -0.52 -13.24 16 19 C 0.07 1.16 9.79 59.84 0.59 1.75 16 20 C 0.25 6.38 5.18 -5.19 -0.03 6.36 16 21 C -0.53 -14.82 9.39 -34.44 -0.32 -15.14 16 22 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 23 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 24 N -0.89 -26.36 13.29 55.43 0.74 -25.63 16 25 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 26 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 27 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 28 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 31 H 0.07 0.55 5.40 -51.93 -0.28 0.27 16 32 H 0.12 0.75 8.06 -52.49 -0.42 0.32 16 33 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 34 H 0.12 0.68 8.06 -52.48 -0.42 0.25 16 35 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 36 H 0.08 0.78 6.96 -51.93 -0.36 0.42 16 37 H 0.08 0.73 8.01 -51.93 -0.42 0.31 16 38 H 0.11 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.11 0.99 6.88 -51.93 -0.36 0.64 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.09 1.19 6.33 -51.93 -0.33 0.86 16 43 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.08 1.28 8.03 -51.93 -0.42 0.87 16 45 H 0.06 0.79 4.92 -51.93 -0.26 0.53 16 46 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 47 H 0.05 1.36 7.36 -51.92 -0.38 0.98 16 48 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 398.49 15.07 6.01 6.01 Total: -1.00 -34.59 398.49 -9.07 -43.66 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -7.32 Total: -0.73 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: -2.02 Total: 0.79 kcal Atomic # 7 Polarization: -39.08 SS G_CDS: 0.21 Total: -38.87 kcal Atomic # 8 Polarization: -26.56 SS G_CDS: -0.94 Total: -27.49 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.59 -9.07 -43.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729013959.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.432 kcal (2) G-P(sol) polarization free energy of solvation -34.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds