Wall clock time and date at job start Tue Mar 31 2020 17:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38264 * 119.99975 * 2 1 4 4 C 1.38207 * 119.99832 * 180.27763 * 3 2 1 5 5 C 1.38256 * 120.00234 * 359.74871 * 4 3 2 6 6 C 1.38212 * 119.99869 * 359.97438 * 5 4 3 7 7 C 1.38214 * 120.00372 * 179.75128 * 2 1 3 8 8 C 1.50703 * 119.99801 * 359.97438 * 7 2 1 9 9 C 1.52996 * 109.47402 * 84.72710 * 8 7 2 10 10 C 1.50690 * 109.47602 * 180.02562 * 9 8 7 11 11 O 1.20835 * 119.99848 * 359.97438 * 10 9 8 12 12 O 1.34228 * 120.00597 * 180.02562 * 10 9 8 13 13 C 1.45198 * 117.00315 * 180.02562 * 12 10 9 14 14 H 1.08992 * 109.47190 * 30.00040 * 13 12 10 15 15 C 1.53008 * 109.46767 * 269.99870 * 13 12 10 16 16 C 1.50700 * 109.47249 * 150.00443 * 13 12 10 17 17 O 1.21281 * 119.99959 * 16.01589 * 16 13 12 18 18 N 1.34778 * 119.99806 * 196.02758 * 16 13 12 19 19 C 1.46494 * 120.00128 * 5.36099 * 18 16 13 20 20 C 1.46499 * 119.99700 * 185.35729 * 18 16 13 21 21 C 1.50702 * 109.46860 * 89.99917 * 20 18 16 22 22 H 1.07999 * 120.00293 * 0.02562 * 21 20 18 23 23 C 1.37886 * 120.00009 * 179.97438 * 21 20 18 24 24 N 1.31515 * 119.99573 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99940 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47239 * 0.02562 * 25 23 21 27 27 H 1.48493 * 109.46705 * 120.00367 * 25 23 21 28 28 H 1.48502 * 109.47091 * 240.00102 * 25 23 21 29 29 H 1.09007 * 109.46799 * 270.25010 * 1 2 3 30 30 H 1.08996 * 109.47292 * 30.24947 * 1 2 3 31 31 H 1.09003 * 109.47074 * 150.25794 * 1 2 3 32 32 H 1.07995 * 119.99878 * 0.04208 * 3 2 1 33 33 H 1.08002 * 119.99866 * 179.76449 * 4 3 2 34 34 H 1.08004 * 120.00212 * 179.97438 * 5 4 3 35 35 H 1.08000 * 119.99961 * 180.02562 * 6 5 4 36 36 H 1.09003 * 109.47169 * 324.72809 * 8 7 2 37 37 H 1.09002 * 109.47315 * 204.73252 * 8 7 2 38 38 H 1.09003 * 109.46877 * 59.99921 * 9 8 7 39 39 H 1.09002 * 109.47329 * 300.00534 * 9 8 7 40 40 H 1.09003 * 109.47298 * 66.14029 * 15 13 12 41 41 H 1.08997 * 109.47061 * 306.13670 * 15 13 12 42 42 H 1.09000 * 109.46859 * 186.13817 * 15 13 12 43 43 H 1.08998 * 109.47479 * 84.82343 * 19 18 16 44 44 H 1.09002 * 109.47016 * 204.82429 * 19 18 16 45 45 H 1.09000 * 109.46810 * 324.81906 * 19 18 16 46 46 H 1.09003 * 109.47348 * 209.99678 * 20 18 16 47 47 H 1.09008 * 109.47508 * 330.00271 * 20 18 16 48 48 H 0.96998 * 119.99687 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 -0.0058 5 6 4.2717 0.0001 -0.0064 6 6 3.5806 -1.1969 -0.0006 7 6 2.1981 -1.1969 0.0052 8 6 1.4447 -2.5020 0.0114 9 6 1.0743 -2.8840 -1.4230 10 6 0.3203 -4.1888 -1.4168 11 8 0.1020 -4.7553 -0.3721 12 8 -0.1079 -4.7221 -2.5717 13 6 -0.8278 -5.9804 -2.4899 14 1 -1.3571 -6.0350 -1.5387 15 6 0.1628 -7.1422 -2.5898 16 6 -1.8189 -6.0667 -3.6219 17 8 -1.7204 -5.3198 -4.5723 18 7 -2.8148 -6.9737 -3.5779 19 6 -3.0052 -7.7951 -2.3799 20 6 -3.7069 -7.1382 -4.7283 21 6 -3.1398 -8.1791 -5.6589 22 1 -2.2083 -8.6693 -5.4175 23 6 -3.8108 -8.5063 -6.8182 24 7 -4.9454 -7.9096 -7.1120 25 14 -3.1074 -9.7959 -7.9721 26 1 -1.8303 -10.3125 -7.4177 27 1 -4.0741 -10.9144 -8.1124 28 1 -2.8591 -9.1864 -9.3033 29 1 -0.3633 0.0045 1.0277 30 1 -0.3634 0.8877 -0.5177 31 1 -0.3633 -0.8923 -0.5098 32 1 1.6583 2.1327 0.0007 33 1 4.1203 2.1327 -0.0096 34 1 5.3517 0.0000 -0.0113 35 1 4.1206 -2.1322 -0.0006 36 1 0.5366 -2.3945 0.6048 37 1 2.0715 -3.2814 0.4447 38 1 1.9823 -2.9916 -2.0163 39 1 0.4474 -2.1046 -1.8563 40 1 0.8109 -7.1435 -1.7133 41 1 0.7680 -7.0273 -3.4890 42 1 -0.3847 -8.0834 -2.6381 43 1 -3.6091 -7.2476 -1.6563 44 1 -3.5131 -8.7206 -2.6509 45 1 -2.0349 -8.0281 -1.9413 46 1 -4.6904 -7.4570 -4.3827 47 1 -3.7974 -6.1891 -5.2566 48 1 -5.4172 -8.1396 -7.9277 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000729013959.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:19 Heat of formation + Delta-G solvation = -125.164395 kcal Electronic energy + Delta-G solvation = -28024.664215 eV Core-core repulsion = 24043.634767 eV Total energy + Delta-G solvation = -3981.029448 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.97308 -40.71446 -40.28757 -37.76936 -36.69596 -35.31263 -34.85780 -33.38914 -33.03192 -30.91621 -29.70652 -27.93492 -27.59034 -26.44028 -25.72922 -24.15361 -22.87601 -21.96012 -21.19886 -20.40425 -19.08105 -18.70326 -18.13707 -17.61184 -17.48751 -17.05831 -16.72176 -16.60729 -16.20946 -16.05128 -15.63020 -15.07343 -14.83998 -14.69204 -14.30767 -14.21886 -14.05453 -13.97442 -13.76315 -13.63302 -13.55854 -13.36557 -13.27123 -13.11547 -13.02739 -12.83827 -12.68207 -12.66086 -12.52643 -12.27834 -12.22053 -11.95023 -11.82475 -11.70891 -11.69449 -11.56031 -10.66093 -10.63922 -9.68393 -9.53439 -9.45890 -8.23992 -6.38781 0.42118 0.51501 1.06793 1.32455 1.37276 1.39596 1.50775 1.59424 2.32257 2.43564 2.86635 3.06230 3.39166 3.49013 3.75476 3.82374 3.88324 3.94041 4.03171 4.07782 4.17260 4.27499 4.29173 4.42619 4.53275 4.56671 4.57927 4.58959 4.63618 4.79269 4.80346 4.85183 4.93452 4.94352 4.99720 5.02348 5.07185 5.19215 5.22668 5.32632 5.38066 5.51130 5.62358 5.66019 5.77172 5.77446 6.02203 6.16263 6.51642 6.65122 6.70445 7.18543 7.34853 8.83795 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.022615 B = 0.002028 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.825077 B =13802.743997 C =13900.116618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.092 4.092 3 C -0.131 4.131 4 C -0.125 4.125 5 C -0.133 4.133 6 C -0.120 4.120 7 C -0.097 4.097 8 C -0.060 4.060 9 C -0.103 4.103 10 C 0.462 3.538 11 O -0.525 6.525 12 O -0.347 6.347 13 C 0.080 3.920 14 H 0.121 0.879 15 C -0.158 4.158 16 C 0.500 3.500 17 O -0.578 6.578 18 N -0.601 5.601 19 C 0.067 3.933 20 C 0.258 3.742 21 C -0.543 4.543 22 H 0.058 0.942 23 C 0.006 3.994 24 N -0.928 5.928 25 Si 0.970 3.030 26 H -0.264 1.264 27 H -0.270 1.270 28 H -0.283 1.283 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.135 0.865 33 H 0.139 0.861 34 H 0.139 0.861 35 H 0.135 0.865 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.124 0.876 39 H 0.115 0.885 40 H 0.095 0.905 41 H 0.063 0.937 42 H 0.094 0.906 43 H 0.072 0.928 44 H 0.080 0.920 45 H 0.091 0.909 46 H 0.030 0.970 47 H 0.000 1.000 48 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.620 12.810 19.211 28.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.092 4.092 3 C -0.149 4.149 4 C -0.143 4.143 5 C -0.151 4.151 6 C -0.137 4.137 7 C -0.097 4.097 8 C -0.097 4.097 9 C -0.140 4.140 10 C 0.306 3.694 11 O -0.414 6.414 12 O -0.263 6.263 13 C 0.022 3.978 14 H 0.139 0.861 15 C -0.216 4.216 16 C 0.287 3.713 17 O -0.458 6.458 18 N -0.333 5.333 19 C -0.075 4.075 20 C 0.137 3.863 21 C -0.582 4.582 22 H 0.077 0.923 23 C -0.193 4.193 24 N -0.568 5.568 25 Si 0.794 3.206 26 H -0.188 1.188 27 H -0.195 1.195 28 H -0.209 1.209 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.152 0.848 33 H 0.157 0.843 34 H 0.157 0.843 35 H 0.153 0.847 36 H 0.098 0.902 37 H 0.102 0.898 38 H 0.142 0.858 39 H 0.133 0.867 40 H 0.113 0.887 41 H 0.083 0.917 42 H 0.113 0.887 43 H 0.091 0.909 44 H 0.099 0.901 45 H 0.109 0.891 46 H 0.048 0.952 47 H 0.018 0.982 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 16.414 12.985 18.900 28.200 hybrid contribution -0.252 -0.592 -0.941 1.140 sum 16.161 12.394 17.959 27.153 Atomic orbital electron populations 1.20933 0.90743 1.03303 1.02972 1.20030 0.96650 0.92942 0.99544 1.21297 0.94812 0.97863 1.00922 1.21453 0.94389 0.99013 0.99473 1.21421 1.00963 0.92363 1.00379 1.21310 0.93427 0.99225 0.99784 1.19700 0.94046 0.93993 1.01938 1.20317 1.00931 0.94467 0.94033 1.21511 1.01589 0.90282 1.00666 1.24441 0.76495 0.87604 0.80834 1.90628 1.54994 1.62829 1.32958 1.86659 1.66204 1.37386 1.36035 1.22523 0.93246 0.83659 0.98367 0.86146 1.22163 0.99018 0.96118 1.04262 1.20679 0.82129 0.80666 0.87809 1.90655 1.74243 1.43732 1.37172 1.48071 1.30263 1.37002 1.17955 1.22149 1.03579 0.95970 0.85776 1.18873 0.88642 0.95571 0.83184 1.21728 1.07926 1.22012 1.06501 0.92341 1.25891 0.95190 0.98888 0.99305 1.70061 1.16812 1.43630 1.26254 0.85332 0.78724 0.78442 0.78103 1.18836 1.19484 1.20867 0.90456 0.90561 0.91676 0.84751 0.84311 0.84309 0.84742 0.90248 0.89767 0.85782 0.86732 0.88652 0.91743 0.88698 0.90935 0.90105 0.89079 0.95192 0.98202 0.92359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.74 9.22 71.24 0.66 -1.08 16 2 C -0.09 -1.48 5.88 -19.86 -0.12 -1.59 16 3 C -0.13 -1.90 9.70 22.27 0.22 -1.68 16 4 C -0.13 -1.65 10.05 22.27 0.22 -1.43 16 5 C -0.13 -1.77 10.05 22.27 0.22 -1.55 16 6 C -0.12 -1.76 9.68 22.27 0.22 -1.54 16 7 C -0.10 -1.58 5.13 -19.87 -0.10 -1.68 16 8 C -0.06 -1.00 3.94 29.85 0.12 -0.88 16 9 C -0.10 -1.90 5.60 29.84 0.17 -1.73 16 10 C 0.46 11.93 7.93 71.23 0.56 12.50 16 11 O -0.52 -14.70 15.20 21.94 0.33 -14.37 16 12 O -0.35 -11.26 9.47 -45.20 -0.43 -11.69 16 13 C 0.08 2.60 2.14 29.85 0.06 2.66 16 14 H 0.12 3.43 6.31 -2.39 -0.02 3.42 16 15 C -0.16 -4.21 9.19 71.98 0.66 -3.54 16 16 C 0.50 21.85 6.95 87.66 0.61 22.46 16 17 O -0.58 -31.35 16.13 15.23 0.25 -31.11 16 18 N -0.60 -25.80 2.86 -851.13 -2.43 -28.23 16 19 C 0.07 2.00 9.79 127.77 1.25 3.25 16 20 C 0.26 13.94 5.18 85.63 0.44 14.38 16 21 C -0.54 -30.93 9.39 25.60 0.24 -30.69 16 22 H 0.06 3.26 7.81 -2.91 -0.02 3.23 16 23 C 0.01 0.36 5.46 84.66 0.46 0.83 16 24 N -0.93 -55.89 13.29 21.45 0.28 -55.60 16 25 Si 0.97 44.44 29.54 68.60 2.03 46.47 16 26 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 27 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 28 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 29 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 30 H 0.08 0.93 8.09 -2.39 -0.02 0.91 16 31 H 0.06 0.98 5.40 -2.39 -0.01 0.97 16 32 H 0.13 1.47 8.06 -2.91 -0.02 1.45 16 33 H 0.14 1.21 8.06 -2.91 -0.02 1.19 16 34 H 0.14 1.25 8.06 -2.91 -0.02 1.23 16 35 H 0.13 1.55 8.06 -2.91 -0.02 1.53 16 36 H 0.08 1.40 6.96 -2.39 -0.02 1.38 16 37 H 0.08 1.36 8.01 -2.39 -0.02 1.34 16 38 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.11 2.01 6.88 -2.39 -0.02 1.99 16 40 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.09 2.35 6.33 -2.39 -0.02 2.33 16 43 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.08 2.44 8.03 -2.39 -0.02 2.42 16 45 H 0.09 2.14 4.92 -2.39 -0.01 2.13 16 46 H 0.03 1.63 8.07 -2.39 -0.02 1.61 16 47 H 0.00 -0.01 7.36 -2.38 -0.02 -0.03 16 48 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 Total: -1.00 -76.93 398.49 6.88 -70.05 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: 0.95 Total: 15.80 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: 5.90 Total: 8.68 kcal Atomic # 7 Polarization: -81.68 SS G_CDS: -2.15 Total: -83.83 kcal Atomic # 8 Polarization: -57.32 SS G_CDS: 0.15 Total: -57.17 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -76.93 6.88 -70.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729013959.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.118 kcal (2) G-P(sol) polarization free energy of solvation -76.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds