Wall clock time and date at job start Tue Mar 31 2020 17:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38279 * 119.93129 * 2 1 4 4 C 1.38112 * 120.07227 * 180.27773 * 3 2 1 5 5 C 1.38880 * 119.92591 * 359.46855 * 4 3 2 6 6 N 1.39921 * 120.06637 * 180.29734 * 5 4 3 7 7 C 1.46504 * 119.99709 * 247.88943 * 6 5 4 8 8 C 1.50697 * 109.46906 * 90.00866 * 7 6 5 9 9 H 1.08004 * 120.00315 * 359.97438 * 8 7 6 10 10 C 1.37878 * 120.00353 * 179.97438 * 8 7 6 11 11 N 1.31514 * 120.00391 * 179.97438 * 10 8 7 12 12 Si 1.86799 * 119.99694 * 0.02562 * 10 8 7 13 13 H 1.48507 * 109.47341 * 89.99663 * 12 10 8 14 14 H 1.48500 * 109.47361 * 209.99962 * 12 10 8 15 15 H 1.48503 * 109.47252 * 329.99932 * 12 10 8 16 16 C 1.34777 * 120.00051 * 67.90141 * 6 5 4 17 17 O 1.21286 * 120.00048 * 4.72389 * 16 6 5 18 18 C 1.50700 * 119.99602 * 184.73635 * 16 6 5 19 19 O 1.42903 * 109.46769 * 179.97438 * 18 16 6 20 20 C 1.42906 * 113.99835 * 179.97438 * 19 18 16 21 21 C 1.53170 * 109.54367 * 269.55341 * 20 19 18 22 22 C 1.53092 * 109.16191 * 183.15525 * 21 20 19 23 23 O 1.42905 * 109.41817 * 57.60958 * 22 21 20 24 24 C 1.42900 * 114.09249 * 298.84318 * 23 22 21 25 25 C 1.53091 * 109.42018 * 61.16072 * 24 23 22 26 26 C 1.38874 * 119.85729 * 0.27850 * 5 4 3 27 27 C 1.38114 * 119.93006 * 359.97438 * 26 5 4 28 28 H 1.08997 * 109.47146 * 270.23432 * 1 2 3 29 29 H 1.09000 * 109.47057 * 30.22851 * 1 2 3 30 30 H 1.08997 * 109.47241 * 150.23012 * 1 2 3 31 31 H 1.08000 * 119.96745 * 0.04534 * 3 2 1 32 32 H 1.07999 * 120.04037 * 179.73762 * 4 3 2 33 33 H 1.08998 * 109.47136 * 210.00180 * 7 6 5 34 34 H 1.08997 * 109.47384 * 330.00615 * 7 6 5 35 35 H 0.96997 * 119.99949 * 179.97438 * 11 10 8 36 36 H 1.09004 * 109.47228 * 299.98631 * 18 16 6 37 37 H 1.08999 * 109.47466 * 59.99499 * 18 16 6 38 38 H 1.09004 * 109.54183 * 29.82574 * 20 19 18 39 39 H 1.09007 * 109.52432 * 303.05713 * 21 20 19 40 40 H 1.09000 * 109.52468 * 63.24611 * 21 20 19 41 41 H 1.09002 * 109.48036 * 297.62280 * 22 21 20 42 42 H 1.09002 * 109.48249 * 177.59040 * 22 21 20 43 43 H 1.08996 * 109.48260 * 301.16853 * 24 23 22 44 44 H 1.09007 * 109.48808 * 181.14764 * 24 23 22 45 45 H 1.08996 * 109.52742 * 182.48374 * 25 24 23 46 46 H 1.08995 * 109.52571 * 62.29016 * 25 24 23 47 47 H 1.08001 * 120.03091 * 180.02562 * 26 5 4 48 48 H 1.08000 * 119.96158 * 180.02562 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1984 0.0000 4 6 3.5780 1.2018 -0.0058 5 6 4.2739 -0.0001 -0.0005 6 7 5.6731 -0.0001 0.0000 7 6 6.4059 -0.4826 -1.1732 8 6 6.6575 0.6660 -2.1157 9 1 6.3062 1.6564 -1.8661 10 6 7.3361 0.4528 -3.2969 11 7 7.5552 1.4551 -4.1196 12 14 7.9430 -1.2602 -3.7291 13 1 6.8917 -1.9800 -4.4920 14 1 9.1715 -1.1559 -4.5569 15 1 8.2483 -2.0065 -2.4821 16 6 6.3466 0.4437 1.0798 17 8 5.7430 0.7622 2.0823 18 6 7.8498 0.5442 1.0412 19 8 8.3265 1.0368 2.2951 20 6 9.7476 1.1699 2.3649 21 6 10.3588 -0.1314 2.8931 22 6 11.8722 0.0471 3.0390 23 8 12.1389 1.1461 3.9127 24 6 11.6319 2.3982 3.4466 25 6 10.1088 2.3142 3.3172 26 6 3.5780 -1.2019 0.0048 27 6 2.1968 -1.1984 0.0053 28 1 -0.3633 0.0042 1.0276 29 1 -0.3633 0.8879 -0.5174 30 1 -0.3633 -0.8920 -0.5102 31 1 1.6553 2.1327 0.0007 32 1 4.1164 2.1380 -0.0101 33 1 7.3583 -0.9083 -0.8570 34 1 5.8170 -1.2467 -1.6806 35 1 8.0329 1.3051 -4.9504 36 1 8.2752 -0.4415 0.8524 37 1 8.1480 1.2271 0.2458 38 1 10.1431 1.3834 1.3719 39 1 9.9249 -0.3699 3.8642 40 1 10.1533 -0.9410 2.1927 41 1 12.3108 0.2455 2.0610 42 1 12.3071 -0.8617 3.4550 43 1 12.0674 2.6274 2.4741 44 1 11.8937 3.1833 4.1561 45 1 9.7246 3.2537 2.9200 46 1 9.6698 2.1252 4.2967 47 1 4.1163 -2.1382 0.0094 48 1 1.6551 -2.1327 0.0098 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000735271668.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:27 Heat of formation + Delta-G solvation = -102.282798 kcal Electronic energy + Delta-G solvation = -28974.322473 eV Core-core repulsion = 24994.285246 eV Total energy + Delta-G solvation = -3980.037227 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.10158 -39.55123 -38.32027 -36.99946 -35.31166 -32.89559 -32.48757 -31.61522 -31.24697 -30.60858 -28.25976 -27.97889 -25.60511 -24.19240 -23.67644 -22.94287 -22.06473 -21.35138 -20.46424 -19.02884 -17.33821 -17.19983 -16.53612 -16.21767 -16.12725 -15.87226 -15.55646 -15.08466 -15.02381 -14.82135 -14.33303 -14.22164 -13.82100 -13.67710 -13.51618 -13.18709 -13.09698 -12.90189 -12.73091 -12.41652 -12.23899 -12.11622 -12.09128 -11.64797 -11.46117 -11.43433 -11.28261 -11.10833 -10.90726 -10.84422 -10.70984 -10.45248 -10.39679 -9.82614 -9.76359 -9.40111 -9.23948 -8.82967 -8.56558 -8.55756 -7.69098 -6.32218 -4.35220 1.63904 1.78416 3.07610 3.09167 3.14771 3.16848 3.22682 3.72608 4.06158 4.14644 4.15996 4.65673 4.73596 4.85251 4.97080 5.02958 5.09415 5.10213 5.13413 5.19772 5.29992 5.33599 5.40121 5.49485 5.52516 5.53653 5.55502 5.68752 5.73997 5.75277 5.80685 5.85803 5.90976 6.01589 6.05158 6.07059 6.14825 6.33118 6.40124 6.46834 6.64697 6.88735 6.92375 7.02559 7.07229 7.25572 7.30104 7.56256 7.88658 8.25065 8.70053 8.78019 9.25468 10.80048 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009374 B = 0.003743 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2986.377917 B = 7479.464456 C = 9540.880052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.102 4.102 3 C -0.111 4.111 4 C -0.097 4.097 5 C 0.169 3.831 6 N -0.556 5.556 7 C 0.208 3.792 8 C -0.545 4.545 9 H 0.080 0.920 10 C 0.079 3.921 11 N -0.886 5.886 12 Si 0.869 3.131 13 H -0.272 1.272 14 H -0.281 1.281 15 H -0.264 1.264 16 C 0.526 3.474 17 O -0.533 6.533 18 C 0.048 3.952 19 O -0.359 6.359 20 C 0.087 3.913 21 C -0.180 4.180 22 C 0.064 3.936 23 O -0.385 6.385 24 C 0.064 3.936 25 C -0.152 4.152 26 C -0.122 4.122 27 C -0.114 4.114 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.120 0.880 32 H 0.122 0.878 33 H 0.036 0.964 34 H 0.035 0.965 35 H 0.268 0.732 36 H 0.075 0.925 37 H 0.099 0.901 38 H 0.066 0.934 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.052 0.948 42 H 0.096 0.904 43 H 0.053 0.947 44 H 0.098 0.902 45 H 0.082 0.918 46 H 0.081 0.919 47 H 0.120 0.880 48 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.555 -3.447 9.436 10.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.102 4.102 3 C -0.130 4.130 4 C -0.116 4.116 5 C 0.078 3.922 6 N -0.285 5.285 7 C 0.088 3.912 8 C -0.583 4.583 9 H 0.099 0.901 10 C -0.125 4.125 11 N -0.523 5.523 12 Si 0.695 3.305 13 H -0.197 1.197 14 H -0.207 1.207 15 H -0.189 1.189 16 C 0.314 3.686 17 O -0.410 6.410 18 C -0.031 4.031 19 O -0.277 6.277 20 C 0.028 3.972 21 C -0.218 4.218 22 C -0.013 4.013 23 O -0.303 6.303 24 C -0.012 4.012 25 C -0.190 4.190 26 C -0.142 4.142 27 C -0.133 4.133 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.138 0.862 32 H 0.140 0.860 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.078 0.922 36 H 0.093 0.907 37 H 0.117 0.883 38 H 0.084 0.916 39 H 0.099 0.901 40 H 0.094 0.906 41 H 0.071 0.929 42 H 0.114 0.886 43 H 0.071 0.929 44 H 0.116 0.884 45 H 0.101 0.899 46 H 0.099 0.901 47 H 0.139 0.861 48 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 0.353 -3.198 10.108 10.608 hybrid contribution 0.440 -0.933 -1.236 1.610 sum 0.793 -4.131 8.872 9.819 Atomic orbital electron populations 1.20722 0.91531 1.02398 1.01849 1.19821 0.95766 0.93219 1.01419 1.20834 0.93546 0.97414 1.01196 1.21246 0.94072 0.97761 0.98563 1.17484 0.82883 0.93004 0.98826 1.45486 1.03443 1.63082 1.16477 1.19974 0.91669 0.96313 0.83222 1.21315 1.37823 0.95821 1.03344 0.90145 1.24847 0.95163 0.96769 0.95712 1.69879 1.40409 1.31017 1.11000 0.86964 0.79209 0.84959 0.79347 1.19690 1.20680 1.18895 1.20112 0.89175 0.76865 0.82410 1.90671 1.70176 1.48524 1.31616 1.22317 0.92398 1.00865 0.87497 1.87993 1.20104 1.86045 1.33539 1.22112 0.81800 0.94444 0.98803 1.22749 0.96592 0.98972 1.03472 1.22559 0.94320 0.90078 0.94314 1.87915 1.78174 1.16442 1.47791 1.22589 0.92207 0.86326 1.00124 1.22275 0.96608 0.98960 1.01158 1.21146 0.94258 0.97255 1.01516 1.20753 0.93385 0.97341 1.01781 0.91606 0.91789 0.91872 0.86155 0.86029 0.94595 0.94698 0.92203 0.90722 0.88288 0.91552 0.90052 0.90558 0.92927 0.88629 0.92876 0.88356 0.89941 0.90061 0.86150 0.86209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 10.01 36.01 0.36 -0.81 16 2 C -0.10 -1.50 5.88 -104.59 -0.62 -2.12 16 3 C -0.11 -1.81 9.69 -39.61 -0.38 -2.19 16 4 C -0.10 -1.88 9.55 -39.39 -0.38 -2.26 16 5 C 0.17 3.41 4.75 -83.69 -0.40 3.01 16 6 N -0.56 -11.70 2.51 -114.74 -0.29 -11.99 16 7 C 0.21 4.52 3.95 -5.19 -0.02 4.50 16 8 C -0.54 -13.93 9.71 -34.44 -0.33 -14.26 16 9 H 0.08 2.31 8.06 -52.48 -0.42 1.89 16 10 C 0.08 2.07 5.47 -17.82 -0.10 1.98 16 11 N -0.89 -24.96 13.96 55.43 0.77 -24.19 16 12 Si 0.87 19.07 27.47 -169.99 -4.67 14.40 16 13 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 14 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 15 H -0.26 -5.37 6.54 56.52 0.37 -5.01 16 16 C 0.53 11.17 7.60 -10.99 -0.08 11.09 16 17 O -0.53 -12.67 16.26 -14.36 -0.23 -12.91 16 18 C 0.05 0.89 4.90 36.01 0.18 1.06 16 19 O -0.36 -6.39 9.53 -55.14 -0.53 -6.91 16 20 C 0.09 1.20 2.70 -26.55 -0.07 1.13 16 21 C -0.18 -2.18 5.76 -26.60 -0.15 -2.33 16 22 C 0.06 0.67 6.84 37.21 0.25 0.93 16 23 O -0.38 -4.60 10.77 -35.23 -0.38 -4.98 16 24 C 0.06 0.66 6.84 37.20 0.25 0.92 16 25 C -0.15 -1.85 5.79 -26.59 -0.15 -2.00 16 26 C -0.12 -2.14 9.69 -39.39 -0.38 -2.52 16 27 C -0.11 -1.72 9.69 -39.61 -0.38 -2.10 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 30 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 31 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 32 H 0.12 2.45 8.06 -52.49 -0.42 2.03 16 33 H 0.04 0.73 5.53 -51.93 -0.29 0.45 16 34 H 0.04 0.75 7.29 -51.93 -0.38 0.37 16 35 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 36 H 0.07 1.22 7.11 -51.93 -0.37 0.85 16 37 H 0.10 1.87 7.86 -51.93 -0.41 1.46 16 38 H 0.07 0.88 7.79 -51.93 -0.40 0.48 16 39 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.08 0.88 7.99 -51.93 -0.42 0.46 16 41 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.10 0.84 8.14 -51.92 -0.42 0.41 16 45 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 47 H 0.12 1.93 8.06 -52.49 -0.42 1.50 16 48 H 0.12 1.45 8.06 -52.49 -0.42 1.02 16 LS Contribution 393.54 15.07 5.93 5.93 Total: -1.00 -31.56 393.54 -9.56 -41.13 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -7.77 Total: 5.51 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: -2.41 Total: -6.00 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: 0.49 Total: -36.18 kcal Atomic # 8 Polarization: -23.66 SS G_CDS: -1.14 Total: -24.80 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -4.67 Total: 14.40 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.56 -9.56 -41.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000735271668.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.156 kcal (2) G-P(sol) polarization free energy of solvation -31.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds