Wall clock time and date at job start Tue Mar 31 2020 17:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38279 * 119.93129 * 2 1 4 4 C 1.38112 * 120.07227 * 180.27773 * 3 2 1 5 5 C 1.38880 * 119.92591 * 359.46855 * 4 3 2 6 6 N 1.39921 * 120.06637 * 180.29734 * 5 4 3 7 7 C 1.46504 * 119.99709 * 247.88943 * 6 5 4 8 8 C 1.50697 * 109.46906 * 90.00866 * 7 6 5 9 9 H 1.08004 * 120.00315 * 359.97438 * 8 7 6 10 10 C 1.37878 * 120.00353 * 179.97438 * 8 7 6 11 11 N 1.31514 * 120.00391 * 179.97438 * 10 8 7 12 12 Si 1.86799 * 119.99694 * 0.02562 * 10 8 7 13 13 H 1.48507 * 109.47341 * 89.99663 * 12 10 8 14 14 H 1.48500 * 109.47361 * 209.99962 * 12 10 8 15 15 H 1.48503 * 109.47252 * 329.99932 * 12 10 8 16 16 C 1.34777 * 120.00051 * 67.90141 * 6 5 4 17 17 O 1.21286 * 120.00048 * 4.72389 * 16 6 5 18 18 C 1.50700 * 119.99602 * 184.73635 * 16 6 5 19 19 O 1.42903 * 109.46769 * 179.97438 * 18 16 6 20 20 C 1.42906 * 113.99835 * 179.97438 * 19 18 16 21 21 C 1.53170 * 109.54367 * 269.55341 * 20 19 18 22 22 C 1.53092 * 109.16191 * 183.15525 * 21 20 19 23 23 O 1.42905 * 109.41817 * 57.60958 * 22 21 20 24 24 C 1.42900 * 114.09249 * 298.84318 * 23 22 21 25 25 C 1.53091 * 109.42018 * 61.16072 * 24 23 22 26 26 C 1.38874 * 119.85729 * 0.27850 * 5 4 3 27 27 C 1.38114 * 119.93006 * 359.97438 * 26 5 4 28 28 H 1.08997 * 109.47146 * 270.23432 * 1 2 3 29 29 H 1.09000 * 109.47057 * 30.22851 * 1 2 3 30 30 H 1.08997 * 109.47241 * 150.23012 * 1 2 3 31 31 H 1.08000 * 119.96745 * 0.04534 * 3 2 1 32 32 H 1.07999 * 120.04037 * 179.73762 * 4 3 2 33 33 H 1.08998 * 109.47136 * 210.00180 * 7 6 5 34 34 H 1.08997 * 109.47384 * 330.00615 * 7 6 5 35 35 H 0.96997 * 119.99949 * 179.97438 * 11 10 8 36 36 H 1.09004 * 109.47228 * 299.98631 * 18 16 6 37 37 H 1.08999 * 109.47466 * 59.99499 * 18 16 6 38 38 H 1.09004 * 109.54183 * 29.82574 * 20 19 18 39 39 H 1.09007 * 109.52432 * 303.05713 * 21 20 19 40 40 H 1.09000 * 109.52468 * 63.24611 * 21 20 19 41 41 H 1.09002 * 109.48036 * 297.62280 * 22 21 20 42 42 H 1.09002 * 109.48249 * 177.59040 * 22 21 20 43 43 H 1.08996 * 109.48260 * 301.16853 * 24 23 22 44 44 H 1.09007 * 109.48808 * 181.14764 * 24 23 22 45 45 H 1.08996 * 109.52742 * 182.48374 * 25 24 23 46 46 H 1.08995 * 109.52571 * 62.29016 * 25 24 23 47 47 H 1.08001 * 120.03091 * 180.02562 * 26 5 4 48 48 H 1.08000 * 119.96158 * 180.02562 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1984 0.0000 4 6 3.5780 1.2018 -0.0058 5 6 4.2739 -0.0001 -0.0005 6 7 5.6731 -0.0001 0.0000 7 6 6.4059 -0.4826 -1.1732 8 6 6.6575 0.6660 -2.1157 9 1 6.3062 1.6564 -1.8661 10 6 7.3361 0.4528 -3.2969 11 7 7.5552 1.4551 -4.1196 12 14 7.9430 -1.2602 -3.7291 13 1 6.8917 -1.9800 -4.4920 14 1 9.1715 -1.1559 -4.5569 15 1 8.2483 -2.0065 -2.4821 16 6 6.3466 0.4437 1.0798 17 8 5.7430 0.7622 2.0823 18 6 7.8498 0.5442 1.0412 19 8 8.3265 1.0368 2.2951 20 6 9.7476 1.1699 2.3649 21 6 10.3588 -0.1314 2.8931 22 6 11.8722 0.0471 3.0390 23 8 12.1389 1.1461 3.9127 24 6 11.6319 2.3982 3.4466 25 6 10.1088 2.3142 3.3172 26 6 3.5780 -1.2019 0.0048 27 6 2.1968 -1.1984 0.0053 28 1 -0.3633 0.0042 1.0276 29 1 -0.3633 0.8879 -0.5174 30 1 -0.3633 -0.8920 -0.5102 31 1 1.6553 2.1327 0.0007 32 1 4.1164 2.1380 -0.0101 33 1 7.3583 -0.9083 -0.8570 34 1 5.8170 -1.2467 -1.6806 35 1 8.0329 1.3051 -4.9504 36 1 8.2752 -0.4415 0.8524 37 1 8.1480 1.2271 0.2458 38 1 10.1431 1.3834 1.3719 39 1 9.9249 -0.3699 3.8642 40 1 10.1533 -0.9410 2.1927 41 1 12.3108 0.2455 2.0610 42 1 12.3071 -0.8617 3.4550 43 1 12.0674 2.6274 2.4741 44 1 11.8937 3.1833 4.1561 45 1 9.7246 3.2537 2.9200 46 1 9.6698 2.1252 4.2967 47 1 4.1163 -2.1382 0.0094 48 1 1.6551 -2.1327 0.0098 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000735271668.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:26 Heat of formation + Delta-G solvation = -120.193029 kcal Electronic energy + Delta-G solvation = -28975.099119 eV Core-core repulsion = 24994.285246 eV Total energy + Delta-G solvation = -3980.813873 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.60913 -40.59259 -39.66243 -38.24376 -36.97947 -34.73979 -33.63571 -32.94493 -32.13244 -31.92152 -29.98605 -29.43044 -26.82701 -25.21454 -24.72223 -24.54450 -23.52366 -22.68451 -21.47798 -20.50665 -19.16642 -18.72829 -17.99529 -17.57787 -17.26090 -17.00977 -16.89556 -16.37443 -16.24210 -16.10114 -15.79214 -15.54225 -15.12466 -14.88955 -14.60349 -14.48908 -14.39614 -14.31026 -14.18127 -13.86908 -13.66448 -13.30837 -13.22159 -13.01598 -12.80275 -12.56952 -12.46679 -12.45322 -12.27978 -12.13009 -11.95916 -11.93134 -11.74114 -11.41236 -10.96812 -10.82609 -10.70957 -10.58355 -10.09031 -9.89175 -9.16560 -8.33730 -6.43092 0.29971 0.45353 1.37898 1.39353 1.45667 1.48570 1.74978 2.30877 2.68370 2.80945 2.94771 2.99576 3.56206 3.70198 3.81328 3.91870 3.94080 4.02847 4.03456 4.05948 4.06594 4.25006 4.27469 4.37867 4.42222 4.46958 4.50968 4.51996 4.64243 4.68368 4.73884 4.76847 4.80342 4.82795 4.90893 5.00947 5.08198 5.10905 5.14517 5.16201 5.32922 5.37251 5.52153 5.65141 5.69563 5.97953 6.09006 6.17133 6.19257 6.39672 6.61513 7.09934 7.23496 8.82356 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009374 B = 0.003743 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2986.377917 B = 7479.464456 C = 9540.880052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.096 4.096 3 C -0.118 4.118 4 C -0.128 4.128 5 C 0.126 3.874 6 N -0.554 5.554 7 C 0.216 3.784 8 C -0.545 4.545 9 H 0.028 0.972 10 C 0.023 3.977 11 N -0.938 5.938 12 Si 0.938 3.062 13 H -0.267 1.267 14 H -0.281 1.281 15 H -0.231 1.231 16 C 0.517 3.483 17 O -0.567 6.567 18 C 0.058 3.942 19 O -0.381 6.381 20 C 0.075 3.925 21 C -0.175 4.175 22 C 0.064 3.936 23 O -0.399 6.399 24 C 0.067 3.933 25 C -0.151 4.151 26 C -0.131 4.131 27 C -0.109 4.109 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.141 0.859 32 H 0.092 0.908 33 H 0.059 0.941 34 H 0.047 0.953 35 H 0.270 0.730 36 H 0.100 0.900 37 H 0.087 0.913 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.084 0.916 41 H 0.065 0.935 42 H 0.115 0.885 43 H 0.065 0.935 44 H 0.117 0.883 45 H 0.080 0.920 46 H 0.069 0.931 47 H 0.135 0.865 48 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.264 -6.430 9.631 11.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.096 4.096 3 C -0.136 4.136 4 C -0.148 4.148 5 C 0.036 3.964 6 N -0.283 5.283 7 C 0.096 3.904 8 C -0.583 4.583 9 H 0.046 0.954 10 C -0.176 4.176 11 N -0.577 5.577 12 Si 0.760 3.240 13 H -0.192 1.192 14 H -0.206 1.206 15 H -0.153 1.153 16 C 0.307 3.693 17 O -0.447 6.447 18 C -0.021 4.021 19 O -0.300 6.300 20 C 0.017 3.983 21 C -0.213 4.213 22 C -0.012 4.012 23 O -0.318 6.318 24 C -0.009 4.009 25 C -0.189 4.189 26 C -0.150 4.150 27 C -0.127 4.127 28 H 0.100 0.900 29 H 0.092 0.908 30 H 0.102 0.898 31 H 0.159 0.841 32 H 0.110 0.890 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.118 0.882 37 H 0.105 0.895 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.102 0.898 41 H 0.083 0.917 42 H 0.133 0.867 43 H 0.083 0.917 44 H 0.135 0.865 45 H 0.099 0.901 46 H 0.088 0.912 47 H 0.153 0.847 48 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 0.054 -6.185 10.319 12.030 hybrid contribution 0.393 0.125 -1.272 1.337 sum 0.446 -6.060 9.047 10.898 Atomic orbital electron populations 1.20808 0.88131 1.03971 1.03303 1.20345 0.98145 0.92283 0.98817 1.21135 0.92301 0.99484 1.00684 1.21258 0.95750 0.96734 1.01072 1.17887 0.82644 0.94350 1.01559 1.45495 1.04201 1.62637 1.15947 1.19857 0.92931 0.94828 0.82829 1.21388 1.37403 0.94998 1.04521 0.95367 1.25768 0.95141 1.01452 0.95247 1.70044 1.41911 1.33969 1.11802 0.85855 0.78476 0.79294 0.80345 1.19222 1.20607 1.15329 1.20687 0.90418 0.76155 0.82029 1.90627 1.71126 1.50070 1.32836 1.22185 0.90515 1.01804 0.87566 1.87980 1.22687 1.86311 1.33067 1.22448 0.79876 0.96261 0.99689 1.22714 0.97752 0.97997 1.02845 1.22685 0.92965 0.90550 0.95010 1.87901 1.78146 1.17120 1.48603 1.22683 0.90406 0.86431 1.01408 1.22299 0.98278 0.98277 1.00030 1.21403 0.95571 0.96624 1.01405 1.21244 0.92540 0.99153 0.99765 0.90006 0.90811 0.89820 0.84132 0.88984 0.92303 0.93533 0.92090 0.88204 0.89532 0.91023 0.91210 0.89784 0.91714 0.86705 0.91685 0.86460 0.90145 0.91217 0.84693 0.82282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.89 10.01 71.24 0.71 -1.18 16 2 C -0.10 -2.61 5.88 -19.85 -0.12 -2.72 16 3 C -0.12 -3.84 9.69 22.25 0.22 -3.62 16 4 C -0.13 -5.30 9.55 22.39 0.21 -5.08 16 5 C 0.13 5.22 4.75 38.16 0.18 5.40 16 6 N -0.55 -24.05 2.51 -635.30 -1.59 -25.64 16 7 C 0.22 9.32 3.95 85.63 0.34 9.66 16 8 C -0.54 -28.86 9.71 25.60 0.25 -28.61 16 9 H 0.03 1.74 8.06 -2.91 -0.02 1.72 16 10 C 0.02 1.24 5.47 84.65 0.46 1.71 16 11 N -0.94 -54.68 13.96 21.45 0.30 -54.38 16 12 Si 0.94 38.32 27.47 68.60 1.88 40.21 16 13 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 14 H -0.28 -11.40 7.11 99.48 0.71 -10.69 16 15 H -0.23 -8.11 6.54 99.48 0.65 -7.46 16 16 C 0.52 22.87 7.60 87.66 0.67 23.53 16 17 O -0.57 -28.33 16.26 15.99 0.26 -28.07 16 18 C 0.06 2.19 4.90 71.24 0.35 2.54 16 19 O -0.38 -13.98 9.53 -129.94 -1.24 -15.22 16 20 C 0.07 2.06 2.70 30.71 0.08 2.15 16 21 C -0.18 -4.05 5.76 30.68 0.18 -3.88 16 22 C 0.06 1.22 6.84 72.01 0.49 1.71 16 23 O -0.40 -8.88 10.77 -148.98 -1.60 -10.49 16 24 C 0.07 1.30 6.84 72.01 0.49 1.80 16 25 C -0.15 -3.69 5.79 30.69 0.18 -3.51 16 26 C -0.13 -4.44 9.69 22.39 0.22 -4.22 16 27 C -0.11 -2.99 9.69 22.25 0.22 -2.78 16 28 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.07 1.21 8.09 -2.39 -0.02 1.19 16 30 H 0.08 1.20 8.08 -2.39 -0.02 1.18 16 31 H 0.14 3.82 8.06 -2.91 -0.02 3.80 16 32 H 0.09 4.16 8.06 -2.91 -0.02 4.14 16 33 H 0.06 2.28 5.53 -2.39 -0.01 2.26 16 34 H 0.05 1.92 7.29 -2.39 -0.02 1.90 16 35 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 36 H 0.10 3.16 7.11 -2.38 -0.02 3.14 16 37 H 0.09 3.42 7.86 -2.39 -0.02 3.41 16 38 H 0.07 1.88 7.79 -2.39 -0.02 1.87 16 39 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 40 H 0.08 1.79 7.99 -2.39 -0.02 1.77 16 41 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.12 1.81 8.14 -2.38 -0.02 1.79 16 45 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 46 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 47 H 0.14 4.06 8.06 -2.91 -0.02 4.04 16 48 H 0.16 3.09 8.06 -2.91 -0.02 3.07 16 Total: -1.00 -73.09 393.54 4.02 -69.07 By element: Atomic # 1 Polarization: 30.73 SS G_CDS: 0.88 Total: 31.61 kcal Atomic # 6 Polarization: -12.23 SS G_CDS: 5.13 Total: -7.10 kcal Atomic # 7 Polarization: -78.72 SS G_CDS: -1.29 Total: -80.02 kcal Atomic # 8 Polarization: -51.19 SS G_CDS: -2.58 Total: -53.77 kcal Atomic # 14 Polarization: 38.32 SS G_CDS: 1.88 Total: 40.21 kcal Total: -73.09 4.02 -69.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000735271668.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.120 kcal (2) G-P(sol) polarization free energy of solvation -73.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds