Wall clock time and date at job start Tue Mar 31 2020 18:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.47194 * 2 1 4 4 C 1.52998 * 109.46564 * 239.99825 * 2 1 3 5 5 C 1.50700 * 109.46995 * 120.00065 * 2 1 3 6 6 C 1.38236 * 119.99977 * 59.99790 * 5 2 1 7 7 C 1.38240 * 119.99737 * 180.02562 * 6 5 2 8 8 C 1.38231 * 119.99987 * 0.02562 * 7 6 5 9 9 C 1.50699 * 119.99919 * 179.69751 * 8 7 6 10 10 C 1.53002 * 109.47120 * 89.99535 * 9 8 7 11 11 C 1.50699 * 109.47120 * 179.97438 * 10 9 8 12 12 O 1.21288 * 120.00222 * 354.79924 * 11 10 9 13 13 N 1.34780 * 119.99972 * 174.79926 * 11 10 9 14 14 C 1.37096 * 119.99809 * 5.01917 * 13 11 10 15 15 H 1.08005 * 120.00207 * 22.99769 * 14 13 11 16 16 C 1.38956 * 120.00004 * 202.99127 * 14 13 11 17 17 N 1.31405 * 119.99871 * 351.26264 * 16 14 13 18 18 Si 1.86799 * 119.99793 * 171.25877 * 16 14 13 19 19 H 1.48491 * 109.47400 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.46681 * 120.00477 * 18 16 14 21 21 H 1.48506 * 109.46951 * 240.00008 * 18 16 14 22 22 C 1.46495 * 120.00015 * 185.01518 * 13 11 10 23 23 C 1.50699 * 109.46870 * 90.00267 * 22 13 11 24 24 O 1.20829 * 120.00191 * 359.97438 * 23 22 13 25 25 O 1.34234 * 120.00298 * 179.97438 * 23 22 13 26 26 C 1.38233 * 120.00000 * 359.97114 * 8 7 6 27 27 C 1.38226 * 120.00144 * 0.05278 * 26 8 7 28 28 H 1.08998 * 109.46847 * 300.00196 * 1 2 3 29 29 H 1.09001 * 109.47117 * 59.99800 * 1 2 3 30 30 H 1.08996 * 109.46994 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47079 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.46748 * 300.00083 * 3 2 1 33 33 H 1.09006 * 109.47193 * 59.99856 * 3 2 1 34 34 H 1.08996 * 109.47317 * 299.99621 * 4 2 1 35 35 H 1.09001 * 109.47532 * 60.00676 * 4 2 1 36 36 H 1.09004 * 109.46914 * 180.02562 * 4 2 1 37 37 H 1.07994 * 119.99986 * 359.97438 * 6 5 2 38 38 H 1.07999 * 119.99445 * 179.97438 * 7 6 5 39 39 H 1.09000 * 109.47193 * 209.99906 * 9 8 7 40 40 H 1.09000 * 109.47269 * 330.00308 * 9 8 7 41 41 H 1.09000 * 109.47390 * 300.00250 * 10 9 8 42 42 H 1.09006 * 109.46835 * 60.00097 * 10 9 8 43 43 H 0.96999 * 120.00204 * 185.00652 * 17 16 14 44 44 H 1.09005 * 109.47304 * 209.99676 * 22 13 11 45 45 H 1.08999 * 109.47267 * 330.00164 * 22 13 11 46 46 H 0.96699 * 117.00412 * 179.97438 * 25 23 22 47 47 H 1.08011 * 119.99735 * 179.97438 * 26 8 7 48 48 H 1.08007 * 120.00363 * 179.97438 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 2.0324 -0.7104 1.2305 6 6 1.6984 -2.0339 1.4492 7 6 2.1587 -2.6854 2.5782 8 6 2.9526 -2.0132 3.4886 9 6 3.4488 -2.7215 4.7228 10 6 4.7955 -3.3834 4.4242 11 6 5.2920 -4.0911 5.6586 12 8 4.6822 -3.9903 6.7022 13 7 6.4138 -4.8362 5.6030 14 6 7.1593 -4.8678 4.4529 15 1 7.0911 -4.0570 3.7426 16 6 8.0028 -5.9429 4.2010 17 7 8.2183 -6.8418 5.1350 18 14 8.8303 -6.1104 2.5347 19 1 8.4268 -4.9762 1.6653 20 1 10.3048 -6.0983 2.7109 21 1 8.4176 -7.3897 1.9035 22 6 6.8365 -5.6121 6.7715 23 6 6.2222 -6.9868 6.7105 24 8 5.5046 -7.2875 5.7861 25 8 6.4723 -7.8775 7.6831 26 6 3.2866 -0.6898 3.2698 27 6 2.8259 -0.0383 2.1412 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1301 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6766 -1.7489 -1.2492 35 1 1.6767 -0.2075 -2.1393 36 1 3.1300 -0.7217 -1.2491 37 1 1.0771 -2.5586 0.7385 38 1 1.8974 -3.7192 2.7493 39 1 3.5696 -2.0007 5.5315 40 1 2.7276 -3.4830 5.0195 41 1 4.6748 -4.1042 3.6155 42 1 5.5168 -2.6219 4.1275 43 1 8.8622 -7.5516 4.9856 44 1 7.9230 -5.6995 6.7759 45 1 6.5088 -5.1077 7.6805 46 1 6.0556 -8.7462 7.6008 47 1 3.9066 -0.1646 3.9814 48 1 3.0865 0.9959 1.9703 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736298001.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:04 Heat of formation + Delta-G solvation = -115.678698 kcal Electronic energy + Delta-G solvation = -28691.150006 eV Core-core repulsion = 24710.531889 eV Total energy + Delta-G solvation = -3980.618117 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -39.91206 -39.29107 -38.15353 -36.72255 -35.20426 -34.47051 -32.85695 -31.55438 -30.98020 -29.21592 -27.55806 -27.48016 -27.41068 -24.98045 -23.87755 -22.21119 -21.48120 -20.47212 -19.21139 -19.14150 -17.03484 -16.88546 -16.53813 -15.97326 -15.59738 -15.32175 -14.83744 -14.43418 -14.37034 -14.30899 -14.27428 -14.12874 -13.75617 -13.65290 -13.31452 -12.96588 -12.67569 -12.42748 -12.26974 -12.12062 -11.86874 -11.74067 -11.61381 -11.47264 -11.35912 -11.32079 -11.24345 -11.01043 -10.94002 -10.59525 -10.59137 -10.50210 -10.38832 -10.27164 -10.24421 -9.54961 -9.05555 -8.73849 -8.65901 -8.24931 -7.97316 -6.46893 -4.09242 1.51225 1.58262 3.06366 3.17478 3.20831 3.61072 3.77209 3.89946 4.03409 4.32636 4.49019 4.62042 4.75809 4.84424 5.03369 5.10363 5.15185 5.16936 5.26032 5.37641 5.43782 5.57980 5.60718 5.61806 5.69479 5.71852 5.81738 5.81799 5.86407 5.90110 6.03794 6.10220 6.13911 6.20184 6.25821 6.34003 6.46808 6.53550 6.64377 6.71406 6.73752 6.74017 6.91589 6.96277 7.19839 7.30908 7.60084 7.68278 8.23904 8.96198 9.23051 9.35713 9.75277 10.55046 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015039 B = 0.002808 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.429578 B = 9970.416756 C =10976.343122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.028 4.028 3 C -0.143 4.143 4 C -0.138 4.138 5 C -0.084 4.084 6 C -0.114 4.114 7 C -0.114 4.114 8 C -0.072 4.072 9 C -0.065 4.065 10 C -0.110 4.110 11 C 0.472 3.528 12 O -0.604 6.604 13 N -0.436 5.436 14 C -0.324 4.324 15 H 0.103 0.897 16 C 0.041 3.959 17 N -0.886 5.886 18 Si 0.932 3.068 19 H -0.268 1.268 20 H -0.280 1.280 21 H -0.280 1.280 22 C 0.153 3.847 23 C 0.504 3.496 24 O -0.525 6.525 25 O -0.534 6.534 26 C -0.116 4.116 27 C -0.121 4.121 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.055 0.945 36 H 0.057 0.943 37 H 0.116 0.884 38 H 0.121 0.879 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.087 0.913 42 H 0.080 0.920 43 H 0.272 0.728 44 H 0.138 0.862 45 H 0.076 0.924 46 H 0.388 0.612 47 H 0.120 0.880 48 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.472 10.630 -8.068 15.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.028 4.028 3 C -0.200 4.200 4 C -0.196 4.196 5 C -0.084 4.084 6 C -0.132 4.132 7 C -0.132 4.132 8 C -0.072 4.072 9 C -0.103 4.103 10 C -0.150 4.150 11 C 0.261 3.739 12 O -0.491 6.491 13 N -0.155 5.155 14 C -0.451 4.451 15 H 0.121 0.879 16 C -0.162 4.162 17 N -0.527 5.527 18 Si 0.759 3.241 19 H -0.192 1.192 20 H -0.206 1.206 21 H -0.206 1.206 22 C 0.028 3.972 23 C 0.346 3.654 24 O -0.412 6.412 25 O -0.344 6.344 26 C -0.134 4.134 27 C -0.139 4.139 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.134 0.866 38 H 0.139 0.861 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.105 0.895 42 H 0.098 0.902 43 H 0.084 0.916 44 H 0.155 0.845 45 H 0.094 0.906 46 H 0.244 0.756 47 H 0.138 0.862 48 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -8.687 10.787 -7.803 15.897 hybrid contribution 0.404 -1.077 -1.017 1.536 sum -8.283 9.710 -8.820 15.514 Atomic orbital electron populations 1.21884 0.93959 1.02008 1.01613 1.19464 0.95485 0.94933 0.92937 1.21954 1.01287 0.95099 1.01688 1.21890 1.01404 1.00218 0.96059 1.19705 0.98654 0.94189 0.95879 1.20895 1.00527 0.94259 0.97546 1.21087 0.98033 0.99846 0.94221 1.20069 0.96536 0.94061 0.96582 1.20379 0.96742 0.99451 0.93735 1.21322 0.95962 0.99946 0.97722 1.20307 0.80485 0.83181 0.89879 1.90528 1.58266 1.67976 1.32292 1.43360 1.20522 1.39678 1.11913 1.19733 1.22347 1.05282 0.97717 0.87899 1.25301 0.97843 0.94085 0.98963 1.69603 1.34305 1.15787 1.32996 0.85782 0.78283 0.78652 0.81424 1.19193 1.20645 1.20553 1.20588 1.02606 0.84853 0.89168 1.23740 0.76159 0.87583 0.77887 1.90540 1.37618 1.79090 1.33986 1.84536 1.71798 1.26840 1.51224 1.21074 1.00092 0.94478 0.97710 1.21096 0.98458 0.99887 0.94421 0.92561 0.92607 0.92456 0.92217 0.92627 0.92311 0.92420 0.92610 0.92406 0.86593 0.86091 0.90632 0.90803 0.89465 0.90200 0.91643 0.84493 0.90584 0.75642 0.86156 0.86043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 8.29 37.16 0.31 -0.84 16 2 C -0.03 -0.26 0.85 -155.66 -0.13 -0.40 16 3 C -0.14 -1.17 7.13 37.16 0.26 -0.91 16 4 C -0.14 -1.23 8.29 37.16 0.31 -0.92 16 5 C -0.08 -0.99 4.76 -104.62 -0.50 -1.49 16 6 C -0.11 -1.43 8.71 -39.58 -0.34 -1.77 16 7 C -0.11 -1.62 9.70 -39.58 -0.38 -2.00 16 8 C -0.07 -1.09 5.13 -104.63 -0.54 -1.63 16 9 C -0.07 -1.13 4.65 -27.88 -0.13 -1.26 16 10 C -0.11 -2.16 4.23 -27.88 -0.12 -2.28 16 11 C 0.47 11.35 7.62 -10.98 -0.08 11.26 16 12 O -0.60 -15.65 15.54 5.55 0.09 -15.56 16 13 N -0.44 -10.94 2.11 -116.10 -0.25 -11.19 16 14 C -0.32 -8.06 9.00 -14.93 -0.13 -8.20 16 15 H 0.10 2.40 6.72 -52.48 -0.35 2.05 16 16 C 0.04 1.02 5.41 -17.47 -0.09 0.92 16 17 N -0.89 -22.64 8.21 55.50 0.46 -22.19 16 18 Si 0.93 19.66 29.57 -169.99 -5.03 14.63 16 19 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 20 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 21 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 22 C 0.15 3.73 5.29 -5.20 -0.03 3.70 16 23 C 0.50 12.45 6.29 36.00 0.23 12.67 16 24 O -0.53 -14.59 16.95 -18.75 -0.32 -14.91 16 25 O -0.53 -10.93 13.42 -39.27 -0.53 -11.46 16 26 C -0.12 -1.57 9.70 -39.59 -0.38 -1.96 16 27 C -0.12 -1.47 8.98 -39.59 -0.36 -1.82 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.48 7.39 -51.93 -0.38 0.10 16 31 H 0.06 0.50 7.52 -51.93 -0.39 0.11 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.47 7.51 -51.93 -0.39 0.08 16 34 H 0.06 0.51 7.39 -51.93 -0.38 0.13 16 35 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.12 1.25 7.10 -52.49 -0.37 0.87 16 38 H 0.12 1.66 8.06 -52.49 -0.42 1.23 16 39 H 0.08 1.31 7.98 -51.93 -0.41 0.89 16 40 H 0.07 1.34 8.08 -51.93 -0.42 0.92 16 41 H 0.09 1.77 8.03 -51.93 -0.42 1.35 16 42 H 0.08 1.47 7.74 -51.93 -0.40 1.07 16 43 H 0.27 6.69 8.32 -40.82 -0.34 6.35 16 44 H 0.14 3.35 6.28 -51.93 -0.33 3.03 16 45 H 0.08 1.77 7.36 -51.93 -0.38 1.38 16 46 H 0.39 6.18 9.10 45.56 0.41 6.60 16 47 H 0.12 1.50 8.06 -52.48 -0.42 1.08 16 48 H 0.12 1.24 5.90 -52.48 -0.31 0.93 16 LS Contribution 390.41 15.07 5.88 5.88 Total: -1.00 -31.16 390.41 -8.43 -39.59 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: -6.62 Total: 12.11 kcal Atomic # 6 Polarization: 5.20 SS G_CDS: -2.12 Total: 3.09 kcal Atomic # 7 Polarization: -33.59 SS G_CDS: 0.21 Total: -33.38 kcal Atomic # 8 Polarization: -41.17 SS G_CDS: -0.76 Total: -41.93 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.03 Total: 14.63 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.16 -8.43 -39.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736298001.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.089 kcal (2) G-P(sol) polarization free energy of solvation -31.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds