Wall clock time and date at job start Tue Mar 31 2020 17:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38261 * 120.00124 * 2 1 4 4 C 1.38202 * 120.00104 * 179.97438 * 3 2 1 5 5 C 1.38257 * 120.00182 * 359.74802 * 4 3 2 6 6 C 1.38217 * 119.99714 * 0.50888 * 5 4 3 7 7 C 1.50703 * 119.99908 * 179.76614 * 6 5 4 8 8 H 1.09002 * 109.47152 * 179.72427 * 7 6 5 9 9 C 1.53002 * 109.46966 * 59.72567 * 7 6 5 10 10 C 1.50701 * 109.47064 * 299.72334 * 7 6 5 11 11 O 1.20826 * 119.99939 * 0.02562 * 10 7 6 12 12 O 1.34230 * 120.00046 * 179.97438 * 10 7 6 13 13 C 1.45192 * 117.00018 * 180.02562 * 12 10 7 14 14 H 1.09000 * 109.47511 * 330.00359 * 13 12 10 15 15 C 1.53003 * 109.47147 * 90.00298 * 13 12 10 16 16 C 1.50707 * 109.47316 * 210.00103 * 13 12 10 17 17 O 1.21279 * 119.99714 * 0.02562 * 16 13 12 18 18 N 1.34774 * 120.00009 * 179.97438 * 16 13 12 19 19 C 1.46495 * 120.00096 * 0.02562 * 18 16 13 20 20 C 1.46498 * 119.99793 * 179.97438 * 18 16 13 21 21 C 1.50704 * 109.47165 * 90.00170 * 20 18 16 22 22 H 1.08002 * 119.99632 * 0.02562 * 21 20 18 23 23 C 1.37874 * 119.99842 * 179.97438 * 21 20 18 24 24 N 1.31507 * 120.00573 * 0.02562 * 23 21 20 25 25 Si 1.86808 * 119.99590 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47023 * 0.02562 * 25 23 21 27 27 H 1.48494 * 109.47369 * 120.00372 * 25 23 21 28 28 H 1.48499 * 109.46857 * 240.00210 * 25 23 21 29 29 C 1.38216 * 119.99831 * 179.97438 * 2 1 3 30 30 H 1.09004 * 109.46985 * 270.01850 * 1 2 3 31 31 H 1.08995 * 109.47056 * 30.01877 * 1 2 3 32 32 H 1.09007 * 109.47043 * 150.02302 * 1 2 3 33 33 H 1.07999 * 119.99819 * 0.02562 * 3 2 1 34 34 H 1.08005 * 120.00089 * 180.02562 * 4 3 2 35 35 H 1.08003 * 120.00171 * 180.27467 * 5 4 3 36 36 H 1.09000 * 109.46986 * 180.02562 * 9 7 6 37 37 H 1.09002 * 109.47075 * 299.99352 * 9 7 6 38 38 H 1.08996 * 109.47407 * 60.00310 * 9 7 6 39 39 H 1.08998 * 109.47227 * 299.99679 * 15 13 12 40 40 H 1.09003 * 109.46963 * 60.00194 * 15 13 12 41 41 H 1.09003 * 109.47099 * 180.02562 * 15 13 12 42 42 H 1.08998 * 109.47508 * 89.99513 * 19 18 16 43 43 H 1.09001 * 109.47038 * 209.99730 * 19 18 16 44 44 H 1.08997 * 109.47469 * 329.99179 * 19 18 16 45 45 H 1.08997 * 109.47132 * 210.00436 * 20 18 16 46 46 H 1.09003 * 109.46966 * 330.00327 * 20 18 16 47 47 H 0.96999 * 120.00531 * 179.97438 * 24 23 21 48 48 H 1.07995 * 120.00133 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0000 0.0063 6 6 3.5806 -1.1969 0.0010 7 6 4.3341 -2.5021 0.0020 8 1 3.6258 -3.3306 0.0022 9 6 5.2133 -2.5824 1.2516 10 6 5.2010 -2.5825 -1.2282 11 8 5.2067 -1.6732 -2.0237 12 8 5.9675 -3.6640 -1.4395 13 6 6.7771 -3.6728 -2.6447 14 1 6.2771 -3.0958 -3.4226 15 6 8.1427 -3.0506 -2.3464 16 6 6.9638 -5.0927 -3.1141 17 8 6.4634 -6.0070 -2.4941 18 7 7.6860 -5.3462 -4.2234 19 6 8.2900 -4.2417 -4.9726 20 6 7.8680 -6.7265 -4.6793 21 6 6.7542 -7.0939 -5.6257 22 1 5.9877 -6.3712 -5.8640 23 6 6.7143 -8.3521 -6.1881 24 7 7.6478 -9.2318 -5.8983 25 14 5.3340 -8.8072 -7.3617 26 1 4.4182 -7.6492 -7.5216 27 1 5.9070 -9.1705 -8.6826 28 1 4.5799 -9.9634 -6.8143 29 6 2.1981 -1.1970 0.0005 30 1 -0.3633 0.0003 1.0277 31 1 -0.3633 0.8898 -0.5141 32 1 -0.3633 -0.8902 -0.5135 33 1 1.6583 2.1327 0.0004 34 1 4.1204 2.1327 0.0010 35 1 5.3517 0.0001 0.0112 36 1 5.7586 -3.5262 1.2521 37 1 5.9216 -1.7539 1.2514 38 1 4.5863 -2.5242 2.1413 39 1 8.0077 -2.0237 -2.0069 40 1 8.6428 -3.6277 -1.5685 41 1 8.7503 -3.0568 -3.2513 42 1 9.2904 -4.0451 -4.5869 43 1 8.3534 -4.5098 -6.0272 44 1 7.6757 -3.3483 -4.8612 45 1 8.8253 -6.8164 -5.1926 46 1 7.8515 -7.3979 -3.8208 47 1 7.6195 -10.1172 -6.2937 48 1 1.6581 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000740358369.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:30 Heat of formation + Delta-G solvation = -98.297268 kcal Electronic energy + Delta-G solvation = -28617.911753 eV Core-core repulsion = 24638.047352 eV Total energy + Delta-G solvation = -3979.864402 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.95564 -39.66921 -38.82256 -36.43382 -34.96439 -34.81553 -32.92725 -32.52183 -31.51354 -29.95796 -27.68895 -27.07733 -26.26992 -25.34647 -24.31478 -22.99437 -22.31482 -21.56491 -19.85720 -18.86827 -17.76274 -16.93174 -16.56784 -16.53315 -16.23351 -15.68204 -15.50111 -15.38727 -14.87593 -14.60308 -14.19088 -13.95702 -13.82014 -13.59282 -13.40840 -13.24057 -13.10321 -12.73927 -12.50163 -12.45603 -12.36939 -12.19497 -12.11829 -11.95694 -11.85665 -11.59919 -11.37708 -11.23428 -11.16153 -11.08570 -10.90467 -10.67981 -10.58323 -10.34501 -10.18335 -9.64620 -9.02373 -8.91159 -8.77015 -8.46563 -7.74011 -6.07299 -4.12184 1.09206 1.21739 2.19247 2.52329 3.25665 3.28784 3.36623 3.41482 3.56586 3.90349 4.23817 4.42471 4.47995 4.65641 4.74057 4.83785 4.84918 4.92456 4.95501 5.00888 5.10656 5.12929 5.24185 5.27470 5.33243 5.36141 5.48805 5.53399 5.57246 5.59483 5.64816 5.65835 5.81117 5.83077 5.89128 5.93660 5.99169 6.20907 6.27349 6.35452 6.39894 6.46188 6.80989 6.97098 7.37500 7.45356 7.75507 7.89016 8.18718 8.27981 8.83572 8.98428 9.53052 11.00873 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015401 B = 0.002558 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.586021 B =10942.488351 C =11840.872565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.090 4.090 3 C -0.118 4.118 4 C -0.118 4.118 5 C -0.090 4.090 6 C -0.071 4.071 7 C -0.042 4.042 8 H 0.118 0.882 9 C -0.141 4.141 10 C 0.464 3.536 11 O -0.502 6.502 12 O -0.323 6.323 13 C 0.070 3.930 14 H 0.105 0.895 15 C -0.174 4.174 16 C 0.509 3.491 17 O -0.520 6.520 18 N -0.596 5.596 19 C 0.076 3.924 20 C 0.246 3.754 21 C -0.528 4.528 22 H 0.058 0.942 23 C 0.061 3.939 24 N -0.894 5.894 25 Si 0.899 3.101 26 H -0.273 1.273 27 H -0.283 1.283 28 H -0.282 1.282 29 C -0.108 4.108 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.119 0.881 36 H 0.078 0.922 37 H 0.062 0.938 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.092 0.908 42 H 0.052 0.948 43 H 0.078 0.922 44 H 0.058 0.942 45 H 0.036 0.964 46 H 0.046 0.954 47 H 0.263 0.737 48 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.039 21.131 13.600 25.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.090 4.090 3 C -0.136 4.136 4 C -0.136 4.136 5 C -0.108 4.108 6 C -0.071 4.071 7 C -0.061 4.061 8 H 0.136 0.864 9 C -0.198 4.198 10 C 0.307 3.693 11 O -0.389 6.389 12 O -0.238 6.238 13 C 0.011 3.989 14 H 0.123 0.877 15 C -0.232 4.232 16 C 0.293 3.707 17 O -0.395 6.395 18 N -0.330 5.330 19 C -0.068 4.068 20 C 0.128 3.872 21 C -0.567 4.567 22 H 0.076 0.924 23 C -0.141 4.141 24 N -0.533 5.533 25 Si 0.726 3.274 26 H -0.198 1.198 27 H -0.209 1.209 28 H -0.208 1.208 29 C -0.125 4.125 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.137 0.863 36 H 0.097 0.903 37 H 0.081 0.919 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.111 0.889 42 H 0.070 0.930 43 H 0.097 0.903 44 H 0.077 0.923 45 H 0.054 0.946 46 H 0.064 0.936 47 H 0.073 0.927 48 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -6.207 20.684 13.617 25.530 hybrid contribution -0.649 -0.196 -1.018 1.223 sum -6.856 20.488 12.599 25.010 Atomic orbital electron populations 1.20786 0.91123 1.02881 1.02252 1.19855 0.96063 0.93001 1.00098 1.21030 0.94275 0.97432 1.00895 1.21079 0.94263 0.97872 1.00375 1.20895 0.99780 0.91787 0.98360 1.19295 0.93393 0.93290 1.01104 1.19942 0.96546 0.97684 0.91935 0.86393 1.21803 0.99337 1.03660 0.95037 1.23578 0.78250 0.80034 0.87473 1.90659 1.63991 1.38306 1.45976 1.86601 1.52837 1.41903 1.42432 1.22609 0.92300 0.97299 0.86682 0.87730 1.22392 0.95135 1.01079 1.04553 1.19777 0.80230 0.88914 0.81769 1.90702 1.47323 1.45892 1.55619 1.48058 1.50438 1.09972 1.24484 1.21881 0.96969 0.89671 0.98276 1.19357 0.96979 0.75154 0.95731 1.21463 1.10315 0.98547 1.26362 0.92383 1.24932 0.96228 0.96059 0.96850 1.69933 1.33583 1.05744 1.44034 0.86432 0.82011 0.78561 0.80375 1.19789 1.20913 1.20807 1.20909 0.93033 0.97951 1.00656 0.91210 0.91578 0.91451 0.86201 0.86028 0.86341 0.90293 0.91928 0.90790 0.91449 0.91000 0.88915 0.93018 0.90318 0.92303 0.94589 0.93635 0.92702 0.85852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 10.01 36.01 0.36 -0.43 16 2 C -0.09 -0.86 5.88 -104.62 -0.62 -1.47 16 3 C -0.12 -1.09 9.70 -39.59 -0.38 -1.47 16 4 C -0.12 -1.14 10.05 -39.59 -0.40 -1.54 16 5 C -0.09 -0.98 7.94 -39.58 -0.31 -1.30 16 6 C -0.07 -0.79 4.39 -104.62 -0.46 -1.25 16 7 C -0.04 -0.47 3.01 -92.92 -0.28 -0.75 16 8 H 0.12 1.21 7.88 -51.93 -0.41 0.80 16 9 C -0.14 -1.27 8.93 37.16 0.33 -0.94 16 10 C 0.46 6.84 7.10 36.01 0.26 7.10 16 11 O -0.50 -8.22 14.35 -18.75 -0.27 -8.49 16 12 O -0.32 -5.43 9.32 -45.90 -0.43 -5.86 16 13 C 0.07 1.17 2.18 -27.88 -0.06 1.11 16 14 H 0.11 1.74 6.42 -51.93 -0.33 1.40 16 15 C -0.17 -2.27 9.18 37.16 0.34 -1.93 16 16 C 0.51 10.99 7.15 -10.98 -0.08 10.92 16 17 O -0.52 -13.57 16.08 -14.10 -0.23 -13.79 16 18 N -0.60 -12.69 2.86 -182.96 -0.52 -13.21 16 19 C 0.08 1.18 8.80 59.84 0.53 1.71 16 20 C 0.25 6.43 5.16 -5.19 -0.03 6.40 16 21 C -0.53 -15.03 9.39 -34.44 -0.32 -15.36 16 22 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 23 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 24 N -0.89 -26.50 13.29 55.43 0.74 -25.76 16 25 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 26 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 27 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 28 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 29 C -0.11 -1.11 9.33 -39.58 -0.37 -1.48 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 32 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 33 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 34 H 0.12 0.92 8.06 -52.48 -0.42 0.49 16 35 H 0.12 1.24 7.52 -52.48 -0.39 0.84 16 36 H 0.08 0.75 8.11 -51.93 -0.42 0.33 16 37 H 0.06 0.53 7.37 -51.93 -0.38 0.15 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.09 1.07 4.53 -51.93 -0.24 0.83 16 42 H 0.05 0.67 6.95 -51.93 -0.36 0.30 16 43 H 0.08 1.25 8.07 -51.93 -0.42 0.83 16 44 H 0.06 0.79 6.01 -51.93 -0.31 0.47 16 45 H 0.04 0.93 8.07 -51.93 -0.42 0.52 16 46 H 0.05 1.34 7.42 -51.93 -0.39 0.95 16 47 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 48 H 0.12 1.09 7.95 -52.49 -0.42 0.67 16 LS Contribution 397.69 15.07 5.99 5.99 Total: -1.00 -35.22 397.69 -8.74 -43.96 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -7.41 Total: -0.75 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: -1.59 Total: 0.98 kcal Atomic # 7 Polarization: -39.19 SS G_CDS: 0.21 Total: -38.97 kcal Atomic # 8 Polarization: -27.22 SS G_CDS: -0.92 Total: -28.14 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.22 -8.74 -43.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000740358369.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.338 kcal (2) G-P(sol) polarization free energy of solvation -35.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds