Wall clock time and date at job start Tue Mar 31 2020 17:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38261 * 120.00124 * 2 1 4 4 C 1.38202 * 120.00104 * 179.97438 * 3 2 1 5 5 C 1.38257 * 120.00182 * 359.74802 * 4 3 2 6 6 C 1.38217 * 119.99714 * 0.50888 * 5 4 3 7 7 C 1.50703 * 119.99908 * 179.76614 * 6 5 4 8 8 H 1.09002 * 109.47152 * 179.72427 * 7 6 5 9 9 C 1.53002 * 109.46966 * 59.72567 * 7 6 5 10 10 C 1.50701 * 109.47064 * 299.72334 * 7 6 5 11 11 O 1.20826 * 119.99939 * 0.02562 * 10 7 6 12 12 O 1.34230 * 120.00046 * 179.97438 * 10 7 6 13 13 C 1.45192 * 117.00018 * 180.02562 * 12 10 7 14 14 H 1.09000 * 109.47511 * 330.00359 * 13 12 10 15 15 C 1.53003 * 109.47147 * 90.00298 * 13 12 10 16 16 C 1.50707 * 109.47316 * 210.00103 * 13 12 10 17 17 O 1.21279 * 119.99714 * 0.02562 * 16 13 12 18 18 N 1.34774 * 120.00009 * 179.97438 * 16 13 12 19 19 C 1.46495 * 120.00096 * 0.02562 * 18 16 13 20 20 C 1.46498 * 119.99793 * 179.97438 * 18 16 13 21 21 C 1.50704 * 109.47165 * 90.00170 * 20 18 16 22 22 H 1.08002 * 119.99632 * 0.02562 * 21 20 18 23 23 C 1.37874 * 119.99842 * 179.97438 * 21 20 18 24 24 N 1.31507 * 120.00573 * 0.02562 * 23 21 20 25 25 Si 1.86808 * 119.99590 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47023 * 0.02562 * 25 23 21 27 27 H 1.48494 * 109.47369 * 120.00372 * 25 23 21 28 28 H 1.48499 * 109.46857 * 240.00210 * 25 23 21 29 29 C 1.38216 * 119.99831 * 179.97438 * 2 1 3 30 30 H 1.09004 * 109.46985 * 270.01850 * 1 2 3 31 31 H 1.08995 * 109.47056 * 30.01877 * 1 2 3 32 32 H 1.09007 * 109.47043 * 150.02302 * 1 2 3 33 33 H 1.07999 * 119.99819 * 0.02562 * 3 2 1 34 34 H 1.08005 * 120.00089 * 180.02562 * 4 3 2 35 35 H 1.08003 * 120.00171 * 180.27467 * 5 4 3 36 36 H 1.09000 * 109.46986 * 180.02562 * 9 7 6 37 37 H 1.09002 * 109.47075 * 299.99352 * 9 7 6 38 38 H 1.08996 * 109.47407 * 60.00310 * 9 7 6 39 39 H 1.08998 * 109.47227 * 299.99679 * 15 13 12 40 40 H 1.09003 * 109.46963 * 60.00194 * 15 13 12 41 41 H 1.09003 * 109.47099 * 180.02562 * 15 13 12 42 42 H 1.08998 * 109.47508 * 89.99513 * 19 18 16 43 43 H 1.09001 * 109.47038 * 209.99730 * 19 18 16 44 44 H 1.08997 * 109.47469 * 329.99179 * 19 18 16 45 45 H 1.08997 * 109.47132 * 210.00436 * 20 18 16 46 46 H 1.09003 * 109.46966 * 330.00327 * 20 18 16 47 47 H 0.96999 * 120.00531 * 179.97438 * 24 23 21 48 48 H 1.07995 * 120.00133 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0000 0.0063 6 6 3.5806 -1.1969 0.0010 7 6 4.3341 -2.5021 0.0020 8 1 3.6258 -3.3306 0.0022 9 6 5.2133 -2.5824 1.2516 10 6 5.2010 -2.5825 -1.2282 11 8 5.2067 -1.6732 -2.0237 12 8 5.9675 -3.6640 -1.4395 13 6 6.7771 -3.6728 -2.6447 14 1 6.2771 -3.0958 -3.4226 15 6 8.1427 -3.0506 -2.3464 16 6 6.9638 -5.0927 -3.1141 17 8 6.4634 -6.0070 -2.4941 18 7 7.6860 -5.3462 -4.2234 19 6 8.2900 -4.2417 -4.9726 20 6 7.8680 -6.7265 -4.6793 21 6 6.7542 -7.0939 -5.6257 22 1 5.9877 -6.3712 -5.8640 23 6 6.7143 -8.3521 -6.1881 24 7 7.6478 -9.2318 -5.8983 25 14 5.3340 -8.8072 -7.3617 26 1 4.4182 -7.6492 -7.5216 27 1 5.9070 -9.1705 -8.6826 28 1 4.5799 -9.9634 -6.8143 29 6 2.1981 -1.1970 0.0005 30 1 -0.3633 0.0003 1.0277 31 1 -0.3633 0.8898 -0.5141 32 1 -0.3633 -0.8902 -0.5135 33 1 1.6583 2.1327 0.0004 34 1 4.1204 2.1327 0.0010 35 1 5.3517 0.0001 0.0112 36 1 5.7586 -3.5262 1.2521 37 1 5.9216 -1.7539 1.2514 38 1 4.5863 -2.5242 2.1413 39 1 8.0077 -2.0237 -2.0069 40 1 8.6428 -3.6277 -1.5685 41 1 8.7503 -3.0568 -3.2513 42 1 9.2904 -4.0451 -4.5869 43 1 8.3534 -4.5098 -6.0272 44 1 7.6757 -3.3483 -4.8612 45 1 8.8253 -6.8164 -5.1926 46 1 7.8515 -7.3979 -3.8208 47 1 7.6195 -10.1172 -6.2937 48 1 1.6581 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000740358369.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:29 Heat of formation + Delta-G solvation = -117.300306 kcal Electronic energy + Delta-G solvation = -28618.735787 eV Core-core repulsion = 24638.047352 eV Total energy + Delta-G solvation = -3980.688435 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.13704 -40.86105 -40.06979 -37.69849 -36.74993 -35.68230 -34.93062 -33.29261 -32.89023 -30.72131 -29.57813 -27.77425 -27.70222 -26.35357 -25.80628 -24.47392 -23.19306 -22.66495 -20.84066 -20.46351 -18.95659 -18.68503 -18.16853 -17.60203 -17.40736 -17.13839 -16.82559 -16.50834 -16.27879 -15.88122 -15.56191 -14.92041 -14.82664 -14.55261 -14.44576 -14.38317 -14.24406 -13.95433 -13.78658 -13.57590 -13.56231 -13.36472 -13.19235 -13.04528 -13.01799 -12.84046 -12.69433 -12.62413 -12.53663 -12.44244 -12.23637 -12.01841 -11.89044 -11.78743 -11.71375 -11.44171 -10.67307 -10.64332 -9.76244 -9.54218 -9.49443 -8.25828 -6.40377 0.32214 0.48454 1.03769 1.32356 1.35030 1.37323 1.48800 1.59695 2.29703 2.41654 2.85000 3.04149 3.37220 3.38861 3.56461 3.74491 3.82892 3.91750 4.02748 4.07748 4.18905 4.25151 4.29575 4.49354 4.51249 4.54162 4.60321 4.64650 4.70852 4.83665 4.84258 4.84882 4.86117 4.93462 4.97985 5.08058 5.11946 5.16334 5.18696 5.29330 5.32803 5.49111 5.54776 5.62194 5.68116 5.75953 6.01319 6.10450 6.50356 6.63294 6.68387 7.18047 7.33688 8.81705 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015401 B = 0.002558 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.586021 B =10942.488351 C =11840.872565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.098 4.098 3 C -0.123 4.123 4 C -0.124 4.124 5 C -0.106 4.106 6 C -0.085 4.085 7 C -0.039 4.039 8 H 0.124 0.876 9 C -0.136 4.136 10 C 0.464 3.536 11 O -0.519 6.519 12 O -0.340 6.340 13 C 0.078 3.922 14 H 0.110 0.890 15 C -0.166 4.166 16 C 0.500 3.500 17 O -0.578 6.578 18 N -0.599 5.599 19 C 0.068 3.932 20 C 0.260 3.740 21 C -0.546 4.546 22 H 0.050 0.950 23 C 0.010 3.990 24 N -0.925 5.925 25 Si 0.967 3.033 26 H -0.270 1.270 27 H -0.267 1.267 28 H -0.281 1.281 29 C -0.123 4.123 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.143 0.857 34 H 0.141 0.859 35 H 0.117 0.883 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.069 0.931 41 H 0.111 0.889 42 H 0.087 0.913 43 H 0.075 0.925 44 H 0.086 0.914 45 H 0.034 0.966 46 H 0.002 0.998 47 H 0.268 0.732 48 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.868 23.455 13.386 27.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.098 4.098 3 C -0.141 4.141 4 C -0.142 4.142 5 C -0.124 4.124 6 C -0.085 4.085 7 C -0.058 4.058 8 H 0.142 0.858 9 C -0.193 4.193 10 C 0.308 3.692 11 O -0.407 6.407 12 O -0.256 6.256 13 C 0.020 3.980 14 H 0.128 0.872 15 C -0.222 4.222 16 C 0.287 3.713 17 O -0.458 6.458 18 N -0.332 5.332 19 C -0.074 4.074 20 C 0.139 3.861 21 C -0.585 4.585 22 H 0.069 0.931 23 C -0.189 4.189 24 N -0.565 5.565 25 Si 0.791 3.209 26 H -0.194 1.194 27 H -0.192 1.192 28 H -0.206 1.206 29 C -0.141 4.141 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.086 0.914 33 H 0.161 0.839 34 H 0.159 0.841 35 H 0.135 0.865 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.111 0.889 39 H 0.105 0.895 40 H 0.088 0.912 41 H 0.129 0.871 42 H 0.105 0.895 43 H 0.093 0.907 44 H 0.105 0.895 45 H 0.052 0.948 46 H 0.020 0.980 47 H 0.077 0.923 48 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -7.010 23.060 13.387 27.570 hybrid contribution -0.397 -0.878 -0.930 1.339 sum -7.407 22.182 12.457 26.497 Atomic orbital electron populations 1.20828 0.89431 1.03438 1.03208 1.20208 0.97453 0.92824 0.99299 1.21366 0.94316 0.98347 1.00077 1.21374 0.94796 0.98258 0.99786 1.21020 0.99931 0.92293 0.99190 1.19362 0.93823 0.93159 1.02121 1.20068 0.96354 0.98306 0.91083 0.85776 1.21795 0.99361 1.03435 0.94683 1.24272 0.77735 0.79063 0.88165 1.90636 1.64533 1.38739 1.46842 1.86617 1.53438 1.43236 1.42261 1.22505 0.94647 0.93593 0.87235 0.87197 1.22396 0.92737 1.01609 1.05496 1.20655 0.78974 0.90605 0.81105 1.90660 1.49632 1.48154 1.57371 1.48041 1.50568 1.09612 1.24940 1.22237 0.99004 0.88545 0.97588 1.18855 0.96324 0.77442 0.93465 1.21704 1.10808 0.98930 1.27028 0.93141 1.25824 0.98702 0.95909 0.98502 1.70036 1.35221 1.06213 1.45012 0.85380 0.78807 0.78096 0.78600 1.19437 1.19161 1.20632 1.21137 0.92972 0.98929 1.01062 0.89982 0.90514 0.91421 0.83939 0.84136 0.86458 0.91044 0.91389 0.88898 0.89493 0.91155 0.87062 0.89498 0.90660 0.89521 0.94772 0.98035 0.92256 0.85027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.34 10.01 71.24 0.71 -0.63 16 2 C -0.10 -1.70 5.88 -19.86 -0.12 -1.82 16 3 C -0.12 -2.01 9.70 22.27 0.22 -1.80 16 4 C -0.12 -2.20 10.05 22.27 0.22 -1.97 16 5 C -0.11 -2.21 7.94 22.27 0.18 -2.04 16 6 C -0.08 -1.83 4.39 -19.86 -0.09 -1.92 16 7 C -0.04 -0.86 3.01 -12.28 -0.04 -0.90 16 8 H 0.12 2.53 7.88 -2.39 -0.02 2.51 16 9 C -0.14 -2.34 8.93 71.98 0.64 -1.70 16 10 C 0.46 13.52 7.10 71.24 0.51 14.02 16 11 O -0.52 -16.62 14.35 21.97 0.32 -16.30 16 12 O -0.34 -11.48 9.32 -45.06 -0.42 -11.90 16 13 C 0.08 2.60 2.18 29.85 0.07 2.66 16 14 H 0.11 3.52 6.42 -2.39 -0.02 3.51 16 15 C -0.17 -3.97 9.18 71.98 0.66 -3.30 16 16 C 0.50 22.03 7.15 87.66 0.63 22.66 16 17 O -0.58 -31.64 16.08 15.77 0.25 -31.39 16 18 N -0.60 -25.77 2.86 -851.15 -2.43 -28.20 16 19 C 0.07 2.00 8.80 127.77 1.12 3.12 16 20 C 0.26 14.04 5.16 85.63 0.44 14.48 16 21 C -0.55 -31.79 9.39 25.60 0.24 -31.55 16 22 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 23 C 0.01 0.58 5.46 84.66 0.46 1.04 16 24 N -0.93 -55.81 13.29 21.45 0.28 -55.53 16 25 Si 0.97 45.25 29.54 68.60 2.03 47.28 16 26 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 27 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 28 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 29 C -0.12 -2.44 9.33 22.27 0.21 -2.23 16 30 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 31 H 0.08 0.75 8.09 -2.39 -0.02 0.73 16 32 H 0.07 0.80 8.09 -2.38 -0.02 0.78 16 33 H 0.14 1.59 8.06 -2.91 -0.02 1.57 16 34 H 0.14 1.83 8.06 -2.91 -0.02 1.80 16 35 H 0.12 2.36 7.52 -2.91 -0.02 2.34 16 36 H 0.07 1.34 8.11 -2.39 -0.02 1.32 16 37 H 0.07 1.09 7.37 -2.39 -0.02 1.07 16 38 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.11 2.21 4.53 -2.39 -0.01 2.20 16 42 H 0.09 1.98 6.95 -2.39 -0.02 1.96 16 43 H 0.07 2.29 8.07 -2.39 -0.02 2.27 16 44 H 0.09 2.08 6.01 -2.39 -0.01 2.07 16 45 H 0.03 1.83 8.07 -2.39 -0.02 1.81 16 46 H 0.00 0.09 7.42 -2.39 -0.02 0.08 16 47 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 48 H 0.13 2.24 7.95 -2.91 -0.02 2.22 16 Total: -1.00 -78.96 397.69 7.05 -71.92 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: 0.95 Total: 15.99 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: 6.07 Total: 8.13 kcal Atomic # 7 Polarization: -81.58 SS G_CDS: -2.15 Total: -83.73 kcal Atomic # 8 Polarization: -59.74 SS G_CDS: 0.15 Total: -59.59 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -78.96 7.05 -71.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000740358369.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.383 kcal (2) G-P(sol) polarization free energy of solvation -78.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds