Wall clock time and date at job start Tue Mar 31 2020 17:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38262 * 119.99731 * 2 1 4 4 C 1.38209 * 119.99832 * 180.02562 * 3 2 1 5 5 C 1.38263 * 120.00103 * 359.97438 * 4 3 2 6 6 C 1.38211 * 119.99968 * 0.02562 * 5 4 3 7 7 C 1.50699 * 120.00110 * 179.97438 * 6 5 4 8 8 H 1.08998 * 109.47454 * 179.97438 * 7 6 5 9 9 C 1.53004 * 109.46948 * 300.00175 * 7 6 5 10 10 C 1.50704 * 109.47134 * 59.99741 * 7 6 5 11 11 O 1.20834 * 119.99868 * 0.02562 * 10 7 6 12 12 O 1.34226 * 120.00340 * 180.02562 * 10 7 6 13 13 C 1.45190 * 117.00226 * 180.02562 * 12 10 7 14 14 H 1.09005 * 109.47368 * 329.99911 * 13 12 10 15 15 C 1.53003 * 109.47293 * 90.00047 * 13 12 10 16 16 C 1.50703 * 109.47105 * 209.99770 * 13 12 10 17 17 O 1.21283 * 119.99897 * 345.90312 * 16 13 12 18 18 N 1.34780 * 120.00046 * 165.90106 * 16 13 12 19 19 C 1.46494 * 119.99924 * 4.21152 * 18 16 13 20 20 C 1.46497 * 119.99998 * 184.48528 * 18 16 13 21 21 C 1.50697 * 109.47173 * 269.72835 * 20 18 16 22 22 H 1.07999 * 120.00157 * 359.97438 * 21 20 18 23 23 C 1.37876 * 120.00054 * 180.02562 * 21 20 18 24 24 N 1.31518 * 119.99862 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00267 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47328 * 89.99673 * 25 23 21 27 27 H 1.48498 * 109.47084 * 209.99841 * 25 23 21 28 28 H 1.48498 * 109.47071 * 329.99711 * 25 23 21 29 29 C 1.38207 * 120.00151 * 180.27608 * 2 1 3 30 30 H 1.09004 * 109.47538 * 90.00377 * 1 2 3 31 31 H 1.09005 * 109.47202 * 209.99729 * 1 2 3 32 32 H 1.08999 * 109.47477 * 329.99946 * 1 2 3 33 33 H 1.08001 * 119.99505 * 359.97438 * 3 2 1 34 34 H 1.07996 * 120.00224 * 179.97438 * 4 3 2 35 35 H 1.08004 * 119.99769 * 179.97438 * 5 4 3 36 36 H 1.08998 * 109.46752 * 180.02562 * 9 7 6 37 37 H 1.08998 * 109.46864 * 299.99785 * 9 7 6 38 38 H 1.09001 * 109.47138 * 59.99828 * 9 7 6 39 39 H 1.08990 * 109.47447 * 52.29731 * 15 13 12 40 40 H 1.09007 * 109.47024 * 172.30331 * 15 13 12 41 41 H 1.08999 * 109.46773 * 292.29735 * 15 13 12 42 42 H 1.08998 * 109.47193 * 268.49342 * 19 18 16 43 43 H 1.09004 * 109.47193 * 28.49459 * 19 18 16 44 44 H 1.09006 * 109.47417 * 148.49503 * 19 18 16 45 45 H 1.09008 * 109.47110 * 29.72389 * 20 18 16 46 46 H 1.08996 * 109.47055 * 149.72270 * 20 18 16 47 47 H 0.97000 * 119.99921 * 180.02562 * 24 23 21 48 48 H 1.08003 * 120.00234 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1974 -0.0005 5 6 4.2717 0.0001 -0.0005 6 6 3.5807 -1.1969 -0.0005 7 6 4.3342 -2.5020 -0.0011 8 1 3.6259 -3.3305 -0.0006 9 6 5.2134 -2.5827 -1.2507 10 6 5.2011 -2.5820 1.2290 11 8 5.2062 -1.6728 2.0248 12 8 5.9677 -3.6634 1.4407 13 6 6.7764 -3.6723 2.6464 14 1 7.0463 -2.6497 2.9105 15 6 5.9790 -4.3010 3.7908 16 6 8.0283 -4.4760 2.4056 17 8 8.1089 -5.1962 1.4331 18 7 9.0584 -4.3944 3.2710 19 6 8.9270 -3.5972 4.4930 20 6 10.3114 -5.0981 2.9867 21 6 10.2570 -6.4814 3.5821 22 1 9.3772 -6.8040 4.1190 23 6 11.3308 -7.3348 3.4423 24 7 12.4024 -6.9418 2.7889 25 14 11.2637 -9.0493 4.1810 26 1 10.6998 -9.9956 3.1852 27 1 12.6346 -9.4817 4.5537 28 1 10.4035 -9.0335 5.3913 29 6 2.1981 -1.1969 -0.0058 30 1 -0.3634 -0.0001 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3634 0.8899 0.5138 33 1 1.6581 2.1327 -0.0004 34 1 4.1203 2.1327 -0.0010 35 1 5.3517 0.0001 -0.0014 36 1 5.7580 -3.5268 -1.2514 37 1 4.5863 -2.5248 -2.1404 38 1 5.9216 -1.7541 -1.2508 39 1 5.5928 -5.2701 3.4751 40 1 6.6282 -4.4330 4.6565 41 1 5.1479 -3.6477 4.0563 42 1 9.2742 -2.5816 4.3034 43 1 7.8814 -3.5724 4.8000 44 1 9.5276 -4.0446 5.2851 45 1 10.4499 -5.1721 1.9080 46 1 11.1446 -4.5472 3.4230 47 1 13.1578 -7.5424 2.6902 48 1 1.6581 -2.1322 -0.0099 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000740358370.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:34 Heat of formation + Delta-G solvation = -98.035280 kcal Electronic energy + Delta-G solvation = -28569.526716 eV Core-core repulsion = 24589.673676 eV Total energy + Delta-G solvation = -3979.853041 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.97017 -39.67540 -38.81424 -36.45640 -34.91137 -34.81715 -32.88013 -32.53971 -31.56713 -29.94869 -27.73008 -27.10257 -26.20473 -25.38263 -24.24935 -23.00564 -22.31680 -21.59271 -19.88010 -18.85912 -17.69270 -16.92630 -16.70929 -16.55536 -16.17549 -15.79360 -15.38191 -15.32357 -14.84403 -14.55669 -14.34877 -14.04433 -13.77886 -13.73596 -13.31836 -13.20429 -12.94223 -12.84653 -12.54830 -12.50614 -12.30944 -12.14755 -12.08516 -12.01275 -11.77617 -11.63391 -11.35580 -11.22057 -11.20935 -11.09288 -10.87334 -10.71858 -10.56618 -10.35649 -10.17060 -9.66001 -9.04410 -8.90007 -8.78679 -8.45461 -7.72952 -6.06422 -4.11188 1.07545 1.19898 2.15904 2.51069 3.24181 3.30564 3.36690 3.39400 3.55322 3.89865 4.22845 4.42457 4.48042 4.63809 4.72495 4.83040 4.85744 4.89526 4.95552 5.02380 5.09528 5.12002 5.23585 5.28166 5.29441 5.36957 5.43254 5.51638 5.56651 5.62518 5.66204 5.72673 5.81022 5.87250 5.89678 5.99854 6.06291 6.25677 6.26853 6.33599 6.38289 6.44311 6.79289 6.97872 7.37032 7.45694 7.73355 7.89491 8.19382 8.28861 8.84079 8.98649 9.53664 11.01763 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.027093 B = 0.002229 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.224931 B =12559.743274 C =12605.596539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.091 4.091 3 C -0.118 4.118 4 C -0.117 4.117 5 C -0.089 4.089 6 C -0.071 4.071 7 C -0.040 4.040 8 H 0.116 0.884 9 C -0.144 4.144 10 C 0.463 3.537 11 O -0.502 6.502 12 O -0.323 6.323 13 C 0.071 3.929 14 H 0.102 0.898 15 C -0.170 4.170 16 C 0.507 3.493 17 O -0.517 6.517 18 N -0.596 5.596 19 C 0.067 3.933 20 C 0.247 3.753 21 C -0.526 4.526 22 H 0.058 0.942 23 C 0.060 3.940 24 N -0.895 5.895 25 Si 0.899 3.101 26 H -0.279 1.279 27 H -0.286 1.286 28 H -0.274 1.274 29 C -0.108 4.108 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.119 0.881 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.063 0.937 39 H 0.075 0.925 40 H 0.090 0.910 41 H 0.068 0.932 42 H 0.047 0.953 43 H 0.066 0.934 44 H 0.079 0.921 45 H 0.044 0.956 46 H 0.036 0.964 47 H 0.264 0.736 48 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.236 15.549 -4.162 26.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.091 4.091 3 C -0.136 4.136 4 C -0.135 4.135 5 C -0.107 4.107 6 C -0.071 4.071 7 C -0.059 4.059 8 H 0.134 0.866 9 C -0.201 4.201 10 C 0.306 3.694 11 O -0.390 6.390 12 O -0.238 6.238 13 C 0.012 3.988 14 H 0.120 0.880 15 C -0.228 4.228 16 C 0.292 3.708 17 O -0.393 6.393 18 N -0.330 5.330 19 C -0.076 4.076 20 C 0.129 3.871 21 C -0.565 4.565 22 H 0.076 0.924 23 C -0.142 4.142 24 N -0.534 5.534 25 Si 0.727 3.273 26 H -0.205 1.205 27 H -0.211 1.211 28 H -0.199 1.199 29 C -0.126 4.126 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.137 0.863 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.094 0.906 40 H 0.109 0.891 41 H 0.087 0.913 42 H 0.066 0.934 43 H 0.084 0.916 44 H 0.097 0.903 45 H 0.062 0.938 46 H 0.054 0.946 47 H 0.073 0.927 48 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -20.946 15.349 -4.473 26.350 hybrid contribution 0.175 -0.836 0.717 1.115 sum -20.772 14.513 -3.756 25.616 Atomic orbital electron populations 1.20776 0.91157 1.02781 1.02252 1.19841 0.96010 0.93021 1.00261 1.21035 0.94267 0.97436 1.00888 1.21098 0.94254 0.97928 1.00213 1.20935 0.99938 0.91805 0.98065 1.19300 0.93361 0.93320 1.01114 1.19936 0.96426 0.97519 0.92063 0.86569 1.21828 0.99323 1.04124 0.94823 1.23615 0.78649 0.79878 0.87297 1.90659 1.63648 1.38435 1.46219 1.86623 1.52537 1.41577 1.43051 1.22645 0.90650 1.01771 0.83736 0.87983 1.22296 1.00877 1.02276 0.97307 1.19784 0.83634 0.83221 0.84199 1.90704 1.80509 1.38759 1.29285 1.48078 1.15452 1.49099 1.20380 1.21971 1.02110 0.95071 0.88487 1.19345 0.78270 0.91246 0.98289 1.21405 1.01454 0.98519 1.35110 0.92365 1.24945 0.95243 0.98678 0.95299 1.69932 1.05459 1.36552 1.41413 0.86477 0.77154 0.84264 0.79398 1.20504 1.21150 1.19928 1.20868 0.92956 0.97850 1.00948 0.91224 0.91548 0.91597 0.86202 0.85980 0.86254 0.89997 0.90816 0.91836 0.90640 0.89121 0.91262 0.93425 0.91594 0.90259 0.93819 0.94636 0.92677 0.85953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.70 10.01 36.00 0.36 -0.34 16 2 C -0.09 -0.81 5.88 -104.63 -0.62 -1.42 16 3 C -0.12 -1.05 9.70 -39.58 -0.38 -1.43 16 4 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 5 C -0.09 -0.99 7.93 -39.58 -0.31 -1.31 16 6 C -0.07 -0.77 4.40 -104.62 -0.46 -1.23 16 7 C -0.04 -0.44 3.01 -92.92 -0.28 -0.72 16 8 H 0.12 1.04 7.88 -51.93 -0.41 0.63 16 9 C -0.14 -1.44 8.94 37.16 0.33 -1.11 16 10 C 0.46 6.63 7.10 36.01 0.26 6.89 16 11 O -0.50 -7.95 14.33 -18.76 -0.27 -8.22 16 12 O -0.32 -5.36 9.36 -45.77 -0.43 -5.79 16 13 C 0.07 1.18 2.17 -27.88 -0.06 1.12 16 14 H 0.10 1.60 6.70 -51.93 -0.35 1.25 16 15 C -0.17 -2.40 9.15 37.16 0.34 -2.06 16 16 C 0.51 10.90 7.00 -10.98 -0.08 10.82 16 17 O -0.52 -13.39 16.18 -13.67 -0.22 -13.61 16 18 N -0.60 -12.74 2.86 -182.95 -0.52 -13.26 16 19 C 0.07 1.07 9.86 59.84 0.59 1.66 16 20 C 0.25 6.45 5.14 -5.20 -0.03 6.43 16 21 C -0.53 -14.85 9.39 -34.44 -0.32 -15.17 16 22 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 23 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 24 N -0.89 -26.49 13.29 55.43 0.74 -25.75 16 25 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 26 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 27 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 28 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 29 C -0.11 -1.03 9.33 -39.58 -0.37 -1.40 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 32 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 33 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 34 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 35 H 0.12 1.34 7.52 -52.48 -0.39 0.95 16 36 H 0.08 0.92 8.11 -51.93 -0.42 0.50 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.64 7.39 -51.93 -0.38 0.26 16 39 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.09 1.19 5.52 -51.93 -0.29 0.91 16 41 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.07 0.87 4.22 -51.93 -0.22 0.65 16 44 H 0.08 1.27 8.09 -51.93 -0.42 0.85 16 45 H 0.04 1.28 7.48 -51.92 -0.39 0.89 16 46 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 47 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 48 H 0.12 0.93 7.95 -52.48 -0.42 0.52 16 LS Contribution 399.40 15.07 6.02 6.02 Total: -1.00 -34.76 399.40 -8.68 -43.44 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -7.45 Total: -0.44 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: -1.53 Total: 0.82 kcal Atomic # 7 Polarization: -39.23 SS G_CDS: 0.21 Total: -39.01 kcal Atomic # 8 Polarization: -26.71 SS G_CDS: -0.92 Total: -27.63 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.76 -8.68 -43.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000740358370.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.594 kcal (2) G-P(sol) polarization free energy of solvation -34.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds