Wall clock time and date at job start Tue Mar 31 2020 17:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38262 * 119.99731 * 2 1 4 4 C 1.38209 * 119.99832 * 180.02562 * 3 2 1 5 5 C 1.38263 * 120.00103 * 359.97438 * 4 3 2 6 6 C 1.38211 * 119.99968 * 0.02562 * 5 4 3 7 7 C 1.50699 * 120.00110 * 179.97438 * 6 5 4 8 8 H 1.08998 * 109.47454 * 179.97438 * 7 6 5 9 9 C 1.53004 * 109.46948 * 300.00175 * 7 6 5 10 10 C 1.50704 * 109.47134 * 59.99741 * 7 6 5 11 11 O 1.20834 * 119.99868 * 0.02562 * 10 7 6 12 12 O 1.34226 * 120.00340 * 180.02562 * 10 7 6 13 13 C 1.45190 * 117.00226 * 180.02562 * 12 10 7 14 14 H 1.09005 * 109.47368 * 329.99911 * 13 12 10 15 15 C 1.53003 * 109.47293 * 90.00047 * 13 12 10 16 16 C 1.50703 * 109.47105 * 209.99770 * 13 12 10 17 17 O 1.21283 * 119.99897 * 345.90312 * 16 13 12 18 18 N 1.34780 * 120.00046 * 165.90106 * 16 13 12 19 19 C 1.46494 * 119.99924 * 4.21152 * 18 16 13 20 20 C 1.46497 * 119.99998 * 184.48528 * 18 16 13 21 21 C 1.50697 * 109.47173 * 269.72835 * 20 18 16 22 22 H 1.07999 * 120.00157 * 359.97438 * 21 20 18 23 23 C 1.37876 * 120.00054 * 180.02562 * 21 20 18 24 24 N 1.31518 * 119.99862 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00267 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47328 * 89.99673 * 25 23 21 27 27 H 1.48498 * 109.47084 * 209.99841 * 25 23 21 28 28 H 1.48498 * 109.47071 * 329.99711 * 25 23 21 29 29 C 1.38207 * 120.00151 * 180.27608 * 2 1 3 30 30 H 1.09004 * 109.47538 * 90.00377 * 1 2 3 31 31 H 1.09005 * 109.47202 * 209.99729 * 1 2 3 32 32 H 1.08999 * 109.47477 * 329.99946 * 1 2 3 33 33 H 1.08001 * 119.99505 * 359.97438 * 3 2 1 34 34 H 1.07996 * 120.00224 * 179.97438 * 4 3 2 35 35 H 1.08004 * 119.99769 * 179.97438 * 5 4 3 36 36 H 1.08998 * 109.46752 * 180.02562 * 9 7 6 37 37 H 1.08998 * 109.46864 * 299.99785 * 9 7 6 38 38 H 1.09001 * 109.47138 * 59.99828 * 9 7 6 39 39 H 1.08990 * 109.47447 * 52.29731 * 15 13 12 40 40 H 1.09007 * 109.47024 * 172.30331 * 15 13 12 41 41 H 1.08999 * 109.46773 * 292.29735 * 15 13 12 42 42 H 1.08998 * 109.47193 * 268.49342 * 19 18 16 43 43 H 1.09004 * 109.47193 * 28.49459 * 19 18 16 44 44 H 1.09006 * 109.47417 * 148.49503 * 19 18 16 45 45 H 1.09008 * 109.47110 * 29.72389 * 20 18 16 46 46 H 1.08996 * 109.47055 * 149.72270 * 20 18 16 47 47 H 0.97000 * 119.99921 * 180.02562 * 24 23 21 48 48 H 1.08003 * 120.00234 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1974 -0.0005 5 6 4.2717 0.0001 -0.0005 6 6 3.5807 -1.1969 -0.0005 7 6 4.3342 -2.5020 -0.0011 8 1 3.6259 -3.3305 -0.0006 9 6 5.2134 -2.5827 -1.2507 10 6 5.2011 -2.5820 1.2290 11 8 5.2062 -1.6728 2.0248 12 8 5.9677 -3.6634 1.4407 13 6 6.7764 -3.6723 2.6464 14 1 7.0463 -2.6497 2.9105 15 6 5.9790 -4.3010 3.7908 16 6 8.0283 -4.4760 2.4056 17 8 8.1089 -5.1962 1.4331 18 7 9.0584 -4.3944 3.2710 19 6 8.9270 -3.5972 4.4930 20 6 10.3114 -5.0981 2.9867 21 6 10.2570 -6.4814 3.5821 22 1 9.3772 -6.8040 4.1190 23 6 11.3308 -7.3348 3.4423 24 7 12.4024 -6.9418 2.7889 25 14 11.2637 -9.0493 4.1810 26 1 10.6998 -9.9956 3.1852 27 1 12.6346 -9.4817 4.5537 28 1 10.4035 -9.0335 5.3913 29 6 2.1981 -1.1969 -0.0058 30 1 -0.3634 -0.0001 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3634 0.8899 0.5138 33 1 1.6581 2.1327 -0.0004 34 1 4.1203 2.1327 -0.0010 35 1 5.3517 0.0001 -0.0014 36 1 5.7580 -3.5268 -1.2514 37 1 4.5863 -2.5248 -2.1404 38 1 5.9216 -1.7541 -1.2508 39 1 5.5928 -5.2701 3.4751 40 1 6.6282 -4.4330 4.6565 41 1 5.1479 -3.6477 4.0563 42 1 9.2742 -2.5816 4.3034 43 1 7.8814 -3.5724 4.8000 44 1 9.5276 -4.0446 5.2851 45 1 10.4499 -5.1721 1.9080 46 1 11.1446 -4.5472 3.4230 47 1 13.1578 -7.5424 2.6902 48 1 1.6581 -2.1322 -0.0099 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000740358370.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:33 Heat of formation + Delta-G solvation = -116.519393 kcal Electronic energy + Delta-G solvation = -28570.328248 eV Core-core repulsion = 24589.673676 eV Total energy + Delta-G solvation = -3980.654572 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.13345 -40.84652 -40.06335 -37.70482 -36.70497 -35.68211 -34.87796 -33.30181 -32.92321 -30.71173 -29.64467 -27.72382 -27.66988 -26.45407 -25.75093 -24.47201 -23.16306 -22.69157 -20.83869 -20.45489 -18.84686 -18.70411 -18.19041 -17.68129 -17.37327 -17.18828 -16.77369 -16.34140 -16.18176 -16.07056 -15.59465 -15.01863 -14.81249 -14.59054 -14.48106 -14.29084 -14.09087 -13.96142 -13.83045 -13.64404 -13.56426 -13.36629 -13.21055 -13.06425 -13.01445 -12.87195 -12.68866 -12.62227 -12.56355 -12.38662 -12.19326 -11.96427 -11.93394 -11.80194 -11.71124 -11.44166 -10.65862 -10.62826 -9.75290 -9.54085 -9.48909 -8.23718 -6.38108 0.32733 0.49240 1.02756 1.32073 1.37092 1.40366 1.49500 1.60026 2.30372 2.42534 2.85218 3.06339 3.36742 3.39242 3.58272 3.73268 3.81287 3.90940 4.03197 4.07870 4.18208 4.19617 4.25835 4.50696 4.52155 4.55105 4.56766 4.62744 4.69450 4.80811 4.83270 4.84506 4.88476 4.92737 4.99004 5.09321 5.13746 5.15383 5.17461 5.29978 5.33633 5.50637 5.55289 5.63382 5.69111 5.76612 6.02517 6.11114 6.50655 6.63524 6.70287 7.18769 7.35027 8.83821 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.027093 B = 0.002229 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.224931 B =12559.743274 C =12605.596539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.096 4.096 3 C -0.123 4.123 4 C -0.126 4.126 5 C -0.111 4.111 6 C -0.083 4.083 7 C -0.035 4.035 8 H 0.138 0.862 9 C -0.140 4.140 10 C 0.463 3.537 11 O -0.518 6.518 12 O -0.340 6.340 13 C 0.080 3.920 14 H 0.117 0.883 15 C -0.163 4.163 16 C 0.500 3.500 17 O -0.574 6.574 18 N -0.601 5.601 19 C 0.061 3.939 20 C 0.260 3.740 21 C -0.541 4.541 22 H 0.056 0.944 23 C 0.006 3.994 24 N -0.928 5.928 25 Si 0.969 3.031 26 H -0.281 1.281 27 H -0.275 1.275 28 H -0.261 1.261 29 C -0.116 4.116 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.142 0.858 34 H 0.135 0.865 35 H 0.107 0.893 36 H 0.065 0.935 37 H 0.096 0.904 38 H 0.055 0.945 39 H 0.068 0.932 40 H 0.101 0.899 41 H 0.092 0.908 42 H 0.071 0.929 43 H 0.098 0.902 44 H 0.078 0.922 45 H -0.001 1.001 46 H 0.031 0.969 47 H 0.267 0.733 48 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.861 16.101 -2.960 28.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.096 4.096 3 C -0.141 4.141 4 C -0.144 4.144 5 C -0.129 4.129 6 C -0.083 4.083 7 C -0.054 4.054 8 H 0.156 0.844 9 C -0.197 4.197 10 C 0.307 3.693 11 O -0.406 6.406 12 O -0.256 6.256 13 C 0.022 3.978 14 H 0.134 0.866 15 C -0.220 4.220 16 C 0.286 3.714 17 O -0.453 6.453 18 N -0.333 5.333 19 C -0.081 4.081 20 C 0.139 3.861 21 C -0.580 4.580 22 H 0.074 0.926 23 C -0.193 4.193 24 N -0.568 5.568 25 Si 0.793 3.207 26 H -0.207 1.207 27 H -0.200 1.200 28 H -0.185 1.185 29 C -0.133 4.133 30 H 0.099 0.901 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.160 0.840 34 H 0.153 0.847 35 H 0.125 0.875 36 H 0.084 0.916 37 H 0.115 0.885 38 H 0.075 0.925 39 H 0.087 0.913 40 H 0.120 0.880 41 H 0.111 0.889 42 H 0.090 0.910 43 H 0.116 0.884 44 H 0.097 0.903 45 H 0.017 0.983 46 H 0.049 0.951 47 H 0.076 0.924 48 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -23.590 15.943 -3.232 28.655 hybrid contribution 0.972 -0.898 0.299 1.357 sum -22.618 15.045 -2.933 27.323 Atomic orbital electron populations 1.20826 0.89163 1.03614 1.03206 1.20225 0.97550 0.92726 0.99107 1.21360 0.94029 0.98598 1.00066 1.21332 0.94999 0.98026 1.00050 1.20995 0.99585 0.92795 0.99562 1.19343 0.94028 0.92823 1.02152 1.20057 0.96239 0.98727 0.90393 0.84389 1.21804 0.99419 1.02903 0.95588 1.24304 0.78195 0.78843 0.87981 1.90639 1.64210 1.38688 1.47043 1.86641 1.52915 1.42876 1.43154 1.22508 0.89003 1.01494 0.84811 0.86576 1.22293 1.01307 1.02195 0.96246 1.20648 0.84820 0.82810 0.83091 1.90665 1.81783 1.41354 1.31532 1.48069 1.13988 1.49018 1.22242 1.22286 1.04413 0.95277 0.86080 1.18850 0.80527 0.91431 0.95266 1.21667 1.01469 0.99612 1.35246 0.92577 1.25879 0.94807 1.02967 0.95619 1.70050 1.06163 1.38162 1.42397 0.85394 0.77785 0.78714 0.78799 1.20679 1.20006 1.18458 1.21136 0.92489 0.99117 1.00598 0.90107 0.90911 0.90626 0.84008 0.84670 0.87503 0.91561 0.88510 0.92547 0.91324 0.88038 0.88925 0.91039 0.88417 0.90311 0.98327 0.95137 0.92365 0.84130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.05 10.01 71.24 0.71 -0.34 16 2 C -0.10 -1.48 5.88 -19.87 -0.12 -1.59 16 3 C -0.12 -1.92 9.70 22.27 0.22 -1.71 16 4 C -0.13 -2.31 10.05 22.27 0.22 -2.09 16 5 C -0.11 -2.43 7.93 22.27 0.18 -2.26 16 6 C -0.08 -1.72 4.40 -19.87 -0.09 -1.81 16 7 C -0.04 -0.74 3.01 -12.28 -0.04 -0.78 16 8 H 0.14 2.25 7.88 -2.39 -0.02 2.23 16 9 C -0.14 -2.80 8.94 71.98 0.64 -2.16 16 10 C 0.46 13.03 7.10 71.24 0.51 13.54 16 11 O -0.52 -15.97 14.33 21.94 0.31 -15.65 16 12 O -0.34 -11.30 9.36 -45.14 -0.42 -11.73 16 13 C 0.08 2.64 2.17 29.85 0.06 2.70 16 14 H 0.12 3.48 6.70 -2.38 -0.02 3.47 16 15 C -0.16 -4.28 9.15 71.98 0.66 -3.62 16 16 C 0.50 21.93 7.00 87.66 0.61 22.54 16 17 O -0.57 -31.15 16.18 15.35 0.25 -30.90 16 18 N -0.60 -26.02 2.86 -851.13 -2.43 -28.45 16 19 C 0.06 1.85 9.86 127.77 1.26 3.11 16 20 C 0.26 14.12 5.14 85.63 0.44 14.56 16 21 C -0.54 -31.18 9.39 25.60 0.24 -30.94 16 22 H 0.06 3.18 7.81 -2.91 -0.02 3.16 16 23 C 0.01 0.36 5.46 84.65 0.46 0.82 16 24 N -0.93 -56.15 13.29 21.45 0.28 -55.87 16 25 Si 0.97 44.86 29.54 68.60 2.03 46.88 16 26 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 27 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 28 H -0.26 -11.39 7.11 99.48 0.71 -10.69 16 29 C -0.12 -1.98 9.33 22.27 0.21 -1.77 16 30 H 0.08 0.61 8.14 -2.38 -0.02 0.59 16 31 H 0.07 0.61 8.09 -2.38 -0.02 0.59 16 32 H 0.07 0.58 8.09 -2.39 -0.02 0.56 16 33 H 0.14 1.51 8.06 -2.91 -0.02 1.49 16 34 H 0.14 1.97 8.06 -2.91 -0.02 1.95 16 35 H 0.11 2.49 7.52 -2.91 -0.02 2.47 16 36 H 0.07 1.53 8.11 -2.39 -0.02 1.51 16 37 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.06 1.19 7.39 -2.39 -0.02 1.17 16 39 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.10 2.40 5.52 -2.38 -0.01 2.39 16 41 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.10 2.33 4.22 -2.38 -0.01 2.32 16 44 H 0.08 2.42 8.09 -2.38 -0.02 2.40 16 45 H 0.00 -0.09 7.48 -2.38 -0.02 -0.11 16 46 H 0.03 1.66 8.07 -2.39 -0.02 1.64 16 47 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 48 H 0.14 1.78 7.95 -2.91 -0.02 1.76 16 Total: -1.00 -77.99 399.40 7.15 -70.84 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: 0.95 Total: 16.67 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: 6.18 Total: 8.22 kcal Atomic # 7 Polarization: -82.17 SS G_CDS: -2.15 Total: -84.32 kcal Atomic # 8 Polarization: -58.43 SS G_CDS: 0.14 Total: -58.29 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.88 kcal Total: -77.99 7.15 -70.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000740358370.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.681 kcal (2) G-P(sol) polarization free energy of solvation -77.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds