Wall clock time and date at job start Tue Mar 31 2020 19:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99836 * 2 1 3 5 5 C 1.53001 * 109.47049 * 185.00237 * 4 2 1 6 6 H 1.09002 * 109.46829 * 305.00193 * 5 4 2 7 7 C 1.50700 * 109.46862 * 185.00281 * 5 4 2 8 8 O 1.20830 * 119.99623 * 239.99990 * 7 5 4 9 9 O 1.34223 * 120.00148 * 59.99923 * 7 5 4 10 10 C 1.45205 * 117.00063 * 179.97438 * 9 7 5 11 11 C 1.50695 * 109.47130 * 179.97438 * 10 9 7 12 12 O 1.21273 * 120.00250 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99996 * 180.02562 * 11 10 9 14 14 C 1.46498 * 120.00214 * 180.02562 * 13 11 10 15 15 C 1.50710 * 109.47310 * 179.97438 * 14 13 11 16 16 H 1.08002 * 119.99834 * 0.02562 * 15 14 13 17 17 C 1.37875 * 119.99847 * 180.02562 * 15 14 13 18 18 N 1.31519 * 119.99593 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 120.00359 * 359.97438 * 17 15 14 20 20 H 1.48496 * 109.46885 * 89.99835 * 19 17 15 21 21 H 1.48499 * 109.47182 * 210.00123 * 19 17 15 22 22 H 1.48495 * 109.46885 * 330.00270 * 19 17 15 23 23 C 1.50700 * 109.47108 * 65.00259 * 5 4 2 24 24 C 1.38227 * 120.00086 * 59.72343 * 23 5 4 25 25 C 1.38237 * 120.00163 * 179.80811 * 24 23 5 26 26 C 1.38234 * 119.99637 * 0.40423 * 25 24 23 27 27 C 1.38239 * 120.00076 * 359.85157 * 26 25 24 28 28 C 1.38229 * 119.99888 * 359.95791 * 27 26 25 29 29 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 30 30 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 32 32 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 33 33 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 34 34 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 35 35 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 36 36 H 1.08998 * 109.47192 * 305.00392 * 4 2 1 37 37 H 1.08998 * 109.46934 * 65.00238 * 4 2 1 38 38 H 1.08996 * 109.47184 * 300.00399 * 10 9 7 39 39 H 1.09000 * 109.46580 * 60.00126 * 10 9 7 40 40 H 0.97002 * 119.99988 * 0.02562 * 13 11 10 41 41 H 1.08996 * 109.47185 * 299.99984 * 14 13 11 42 42 H 1.09000 * 109.47296 * 60.00150 * 14 13 11 43 43 H 0.97001 * 119.99895 * 180.02562 * 18 17 15 44 44 H 1.08006 * 120.00253 * 0.02562 * 24 23 5 45 45 H 1.07999 * 120.00220 * 180.23420 * 25 24 23 46 46 H 1.07998 * 120.00083 * 179.83194 * 26 25 24 47 47 H 1.07995 * 119.99924 * 179.97438 * 27 26 25 48 48 H 1.08001 * 119.99856 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.8311 -1.1879 6 1 3.9954 0.1611 -1.0526 7 6 4.0774 -1.4303 -2.4722 8 8 4.6988 -2.4663 -2.4497 9 8 3.8434 -0.8132 -3.6409 10 6 4.3672 -1.4472 -4.8376 11 6 4.0088 -0.6177 -6.0436 12 8 3.3749 0.4072 -5.9079 13 7 4.3929 -1.0147 -7.2729 14 6 4.0450 -0.2080 -8.4452 15 6 4.5885 -0.8662 -9.6873 16 1 5.1378 -1.7930 -9.6110 17 6 4.3846 -0.2852 -10.9209 18 7 4.8585 -0.8598 -12.0048 19 14 3.4339 1.3174 -11.0529 20 1 4.3748 2.4613 -10.9463 21 1 2.7347 1.3718 -12.3619 22 1 2.4365 1.3930 -9.9554 23 6 3.9589 -1.7118 -0.0302 24 6 3.5227 -3.0225 0.0208 25 6 3.8874 -3.8315 1.0807 26 6 4.6815 -3.3274 2.0937 27 6 5.1134 -2.0151 2.0453 28 6 4.7519 -1.2073 0.9834 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1301 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6054 -1.7198 -1.2951 37 1 1.7517 -0.1583 -2.1369 38 1 5.4515 -1.5282 -4.7610 39 1 3.9349 -2.4426 -4.9402 40 1 4.8997 -1.8347 -7.3815 41 1 2.9607 -0.1267 -8.5215 42 1 4.4776 0.7872 -8.3429 43 1 4.7154 -0.4509 -12.8727 44 1 2.8997 -3.4155 -0.7691 45 1 3.5497 -4.8567 1.1187 46 1 4.9642 -3.9586 2.9231 47 1 5.7334 -1.6212 2.8369 48 1 5.0890 -0.1819 0.9458 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000741052071.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:57 Heat of formation + Delta-G solvation = -116.725659 kcal Electronic energy + Delta-G solvation = -28145.624229 eV Core-core repulsion = 24164.960712 eV Total energy + Delta-G solvation = -3980.663517 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.08279 -39.58217 -38.75650 -37.05469 -36.40247 -34.39118 -33.11248 -32.44574 -31.17185 -29.89298 -29.00826 -27.44514 -27.14717 -25.13361 -22.97404 -22.69690 -22.00479 -20.69100 -20.13729 -19.91952 -17.83971 -17.66158 -17.11593 -16.75165 -16.47306 -15.81640 -15.70994 -15.40392 -15.09762 -14.81597 -14.69887 -14.27289 -14.07050 -13.87563 -13.63098 -13.39102 -13.13435 -12.95582 -12.88066 -12.51546 -12.46568 -12.39659 -12.29012 -12.08897 -11.90942 -11.42202 -11.34436 -11.25206 -11.08458 -10.89731 -10.85624 -10.81710 -10.73069 -10.41916 -10.01701 -9.55937 -9.36676 -9.13720 -9.00297 -8.83322 -8.28807 -6.25564 -4.28714 1.02643 1.17944 2.04642 2.36763 3.01066 3.24137 3.30989 3.38673 3.54049 3.86047 4.14636 4.29531 4.35918 4.56128 4.65025 4.68518 4.75522 4.81213 4.86837 4.92696 5.05698 5.08612 5.09150 5.15867 5.20979 5.23186 5.32637 5.39356 5.43082 5.50498 5.62119 5.63334 5.68999 5.74710 5.78926 5.90866 6.02505 6.13470 6.19923 6.26067 6.27661 6.32381 6.71298 6.73432 6.99101 7.07539 7.30050 7.60497 8.03247 8.39574 8.66296 8.78138 9.33420 10.86192 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.017740 B = 0.002267 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.949734 B =12350.342161 C =13400.013913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 C -0.152 4.152 4 C -0.108 4.108 5 C -0.039 4.039 6 H 0.119 0.881 7 C 0.463 3.537 8 O -0.500 6.500 9 O -0.327 6.327 10 C 0.048 3.952 11 C 0.502 3.498 12 O -0.536 6.536 13 N -0.700 5.700 14 C 0.222 3.778 15 C -0.546 4.546 16 H 0.081 0.919 17 C 0.078 3.922 18 N -0.891 5.891 19 Si 0.877 3.123 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.260 1.260 23 C -0.070 4.070 24 C -0.085 4.085 25 C -0.121 4.121 26 C -0.118 4.118 27 C -0.123 4.123 28 C -0.107 4.107 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.074 0.926 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.087 0.913 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.399 0.601 41 H 0.028 0.972 42 H 0.023 0.977 43 H 0.268 0.732 44 H 0.119 0.881 45 H 0.122 0.878 46 H 0.120 0.880 47 H 0.122 0.878 48 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.890 -2.073 30.307 30.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.111 4.111 3 C -0.209 4.209 4 C -0.145 4.145 5 C -0.058 4.058 6 H 0.137 0.863 7 C 0.306 3.694 8 O -0.387 6.387 9 O -0.242 6.242 10 C -0.029 4.029 11 C 0.285 3.715 12 O -0.414 6.414 13 N -0.350 5.350 14 C 0.101 3.899 15 C -0.584 4.584 16 H 0.099 0.901 17 C -0.126 4.126 18 N -0.527 5.527 19 Si 0.703 3.297 20 H -0.198 1.198 21 H -0.208 1.208 22 H -0.185 1.185 23 C -0.070 4.070 24 C -0.103 4.103 25 C -0.139 4.139 26 C -0.136 4.136 27 C -0.141 4.141 28 C -0.125 4.125 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.092 0.908 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.106 0.894 38 H 0.116 0.884 39 H 0.116 0.884 40 H 0.233 0.767 41 H 0.046 0.954 42 H 0.041 0.959 43 H 0.078 0.922 44 H 0.137 0.863 45 H 0.140 0.860 46 H 0.138 0.862 47 H 0.140 0.860 48 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.150 -1.622 30.125 30.453 hybrid contribution 0.078 0.163 -0.462 0.496 sum -4.072 -1.460 29.663 29.977 Atomic orbital electron populations 1.21827 0.94856 1.01794 1.01996 1.21083 0.95949 0.96380 0.97732 1.21927 1.01018 0.95817 1.02155 1.21744 0.90610 1.02121 1.00042 1.20075 0.98691 1.00038 0.86980 0.86299 1.23614 0.77187 0.83050 0.85597 1.90693 1.37480 1.23116 1.87411 1.86550 1.71350 1.51784 1.14496 1.22826 1.00812 0.96922 0.82346 1.19918 0.81054 0.86290 0.84198 1.90696 1.39812 1.24934 1.85918 1.46071 1.55499 1.27599 1.05838 1.19553 0.96449 0.91393 0.82534 1.21066 1.37289 1.10706 0.89329 0.90131 1.24794 0.94925 0.97536 0.95343 1.69879 1.44877 1.39557 0.98437 0.86812 0.80989 0.83747 0.78131 1.19787 1.20832 1.18465 1.19245 0.98643 0.94358 0.94773 1.20927 0.98845 0.93024 0.97513 1.21116 0.98644 0.99726 0.94377 1.21163 0.98008 0.95689 0.98745 1.21076 1.00373 0.94201 0.98410 1.20996 0.97523 0.99919 0.94109 0.92338 0.92718 0.92635 0.90799 0.92656 0.92615 0.92097 0.91051 0.89441 0.88351 0.88360 0.76713 0.95427 0.95888 0.92179 0.86321 0.86047 0.86183 0.86021 0.86002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.19 37.16 0.34 -0.70 16 2 C -0.09 -0.70 2.81 -90.62 -0.25 -0.95 16 3 C -0.15 -1.09 8.95 37.16 0.33 -0.76 16 4 C -0.11 -0.96 4.01 -26.73 -0.11 -1.07 16 5 C -0.04 -0.38 2.35 -92.92 -0.22 -0.60 16 6 H 0.12 1.03 6.08 -51.93 -0.32 0.71 16 7 C 0.46 6.04 7.13 36.01 0.26 6.30 16 8 O -0.50 -7.43 14.88 -18.75 -0.28 -7.71 16 9 O -0.33 -4.86 9.56 -45.88 -0.44 -5.30 16 10 C 0.05 0.70 5.94 36.00 0.21 0.92 16 11 C 0.50 9.47 7.91 -10.99 -0.09 9.38 16 12 O -0.54 -12.17 16.50 -14.10 -0.23 -12.40 16 13 N -0.70 -13.79 5.55 -61.47 -0.34 -14.13 16 14 C 0.22 5.36 4.50 -5.19 -0.02 5.33 16 15 C -0.55 -14.73 9.83 -34.44 -0.34 -15.07 16 16 H 0.08 2.26 7.84 -52.49 -0.41 1.84 16 17 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 18 N -0.89 -26.16 13.96 55.43 0.77 -25.39 16 19 Si 0.88 21.13 27.47 -169.99 -4.67 16.46 16 20 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.26 -6.22 6.54 56.52 0.37 -5.85 16 23 C -0.07 -0.68 3.30 -104.63 -0.34 -1.03 16 24 C -0.09 -0.85 7.89 -39.59 -0.31 -1.16 16 25 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 26 C -0.12 -0.94 10.05 -39.58 -0.40 -1.34 16 27 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 28 C -0.11 -0.92 9.67 -39.59 -0.38 -1.31 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.57 7.23 -51.93 -0.38 0.19 16 33 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.05 0.37 6.46 -51.93 -0.34 0.04 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.62 7.21 -51.93 -0.37 0.25 16 37 H 0.09 0.88 7.99 -51.93 -0.42 0.46 16 38 H 0.10 1.26 8.13 -51.93 -0.42 0.84 16 39 H 0.10 1.25 8.13 -51.93 -0.42 0.82 16 40 H 0.40 6.80 8.32 -40.82 -0.34 6.46 16 41 H 0.03 0.70 7.20 -51.93 -0.37 0.33 16 42 H 0.02 0.58 7.57 -51.93 -0.39 0.18 16 43 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 44 H 0.12 1.18 7.49 -52.48 -0.39 0.79 16 45 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 46 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 47 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 48 H 0.12 0.83 7.95 -52.49 -0.42 0.41 16 LS Contribution 398.55 15.07 6.01 6.01 Total: -1.00 -33.28 398.55 -8.93 -42.22 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -7.54 Total: 3.02 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: -2.21 Total: -2.78 kcal Atomic # 7 Polarization: -39.95 SS G_CDS: 0.43 Total: -39.51 kcal Atomic # 8 Polarization: -24.45 SS G_CDS: -0.95 Total: -25.41 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.67 Total: 16.46 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.28 -8.93 -42.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741052071.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.509 kcal (2) G-P(sol) polarization free energy of solvation -33.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds