Wall clock time and date at job start Tue Mar 31 2020 19:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99836 * 2 1 3 5 5 C 1.53001 * 109.47049 * 185.00237 * 4 2 1 6 6 H 1.09002 * 109.46829 * 305.00193 * 5 4 2 7 7 C 1.50700 * 109.46862 * 185.00281 * 5 4 2 8 8 O 1.20830 * 119.99623 * 239.99990 * 7 5 4 9 9 O 1.34223 * 120.00148 * 59.99923 * 7 5 4 10 10 C 1.45205 * 117.00063 * 179.97438 * 9 7 5 11 11 C 1.50695 * 109.47130 * 179.97438 * 10 9 7 12 12 O 1.21273 * 120.00250 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99996 * 180.02562 * 11 10 9 14 14 C 1.46498 * 120.00214 * 180.02562 * 13 11 10 15 15 C 1.50710 * 109.47310 * 179.97438 * 14 13 11 16 16 H 1.08002 * 119.99834 * 0.02562 * 15 14 13 17 17 C 1.37875 * 119.99847 * 180.02562 * 15 14 13 18 18 N 1.31519 * 119.99593 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 120.00359 * 359.97438 * 17 15 14 20 20 H 1.48496 * 109.46885 * 89.99835 * 19 17 15 21 21 H 1.48499 * 109.47182 * 210.00123 * 19 17 15 22 22 H 1.48495 * 109.46885 * 330.00270 * 19 17 15 23 23 C 1.50700 * 109.47108 * 65.00259 * 5 4 2 24 24 C 1.38227 * 120.00086 * 59.72343 * 23 5 4 25 25 C 1.38237 * 120.00163 * 179.80811 * 24 23 5 26 26 C 1.38234 * 119.99637 * 0.40423 * 25 24 23 27 27 C 1.38239 * 120.00076 * 359.85157 * 26 25 24 28 28 C 1.38229 * 119.99888 * 359.95791 * 27 26 25 29 29 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 30 30 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 32 32 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 33 33 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 34 34 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 35 35 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 36 36 H 1.08998 * 109.47192 * 305.00392 * 4 2 1 37 37 H 1.08998 * 109.46934 * 65.00238 * 4 2 1 38 38 H 1.08996 * 109.47184 * 300.00399 * 10 9 7 39 39 H 1.09000 * 109.46580 * 60.00126 * 10 9 7 40 40 H 0.97002 * 119.99988 * 0.02562 * 13 11 10 41 41 H 1.08996 * 109.47185 * 299.99984 * 14 13 11 42 42 H 1.09000 * 109.47296 * 60.00150 * 14 13 11 43 43 H 0.97001 * 119.99895 * 180.02562 * 18 17 15 44 44 H 1.08006 * 120.00253 * 0.02562 * 24 23 5 45 45 H 1.07999 * 120.00220 * 180.23420 * 25 24 23 46 46 H 1.07998 * 120.00083 * 179.83194 * 26 25 24 47 47 H 1.07995 * 119.99924 * 179.97438 * 27 26 25 48 48 H 1.08001 * 119.99856 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.8311 -1.1879 6 1 3.9954 0.1611 -1.0526 7 6 4.0774 -1.4303 -2.4722 8 8 4.6988 -2.4663 -2.4497 9 8 3.8434 -0.8132 -3.6409 10 6 4.3672 -1.4472 -4.8376 11 6 4.0088 -0.6177 -6.0436 12 8 3.3749 0.4072 -5.9079 13 7 4.3929 -1.0147 -7.2729 14 6 4.0450 -0.2080 -8.4452 15 6 4.5885 -0.8662 -9.6873 16 1 5.1378 -1.7930 -9.6110 17 6 4.3846 -0.2852 -10.9209 18 7 4.8585 -0.8598 -12.0048 19 14 3.4339 1.3174 -11.0529 20 1 4.3748 2.4613 -10.9463 21 1 2.7347 1.3718 -12.3619 22 1 2.4365 1.3930 -9.9554 23 6 3.9589 -1.7118 -0.0302 24 6 3.5227 -3.0225 0.0208 25 6 3.8874 -3.8315 1.0807 26 6 4.6815 -3.3274 2.0937 27 6 5.1134 -2.0151 2.0453 28 6 4.7519 -1.2073 0.9834 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1301 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6054 -1.7198 -1.2951 37 1 1.7517 -0.1583 -2.1369 38 1 5.4515 -1.5282 -4.7610 39 1 3.9349 -2.4426 -4.9402 40 1 4.8997 -1.8347 -7.3815 41 1 2.9607 -0.1267 -8.5215 42 1 4.4776 0.7872 -8.3429 43 1 4.7154 -0.4509 -12.8727 44 1 2.8997 -3.4155 -0.7691 45 1 3.5497 -4.8567 1.1187 46 1 4.9642 -3.9586 2.9231 47 1 5.7334 -1.6212 2.8369 48 1 5.0890 -0.1819 0.9458 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000741052071.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:56 Heat of formation + Delta-G solvation = -134.974202 kcal Electronic energy + Delta-G solvation = -28146.415545 eV Core-core repulsion = 24164.960712 eV Total energy + Delta-G solvation = -3981.454833 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.07787 -40.70471 -39.96326 -37.74165 -37.51472 -36.21294 -34.47332 -33.80055 -31.79128 -31.25221 -30.01744 -28.70984 -28.00527 -25.93642 -24.25699 -23.55451 -23.21950 -21.74866 -21.53580 -20.60360 -19.38816 -18.80069 -18.23183 -17.95435 -17.58052 -17.13389 -16.84640 -16.60504 -16.09154 -15.97689 -15.88017 -15.45011 -14.96585 -14.84278 -14.58476 -14.49218 -14.35599 -14.21332 -13.98712 -13.74841 -13.58478 -13.41148 -13.10377 -13.08102 -12.94616 -12.71481 -12.54407 -12.12679 -11.96944 -11.94206 -11.93935 -11.89117 -11.68130 -11.53522 -11.45817 -11.31240 -10.97610 -10.93057 -10.05563 -9.77232 -9.65640 -8.40726 -6.48485 0.35672 0.54454 1.02714 1.26878 1.33466 1.36774 1.47426 1.50136 2.27651 2.45128 2.93059 2.94583 3.37394 3.57489 3.65712 3.82540 3.96068 4.01395 4.02092 4.08256 4.12219 4.18409 4.26540 4.32244 4.44010 4.63592 4.71426 4.73563 4.79543 4.81212 4.88981 4.98189 4.99464 5.04000 5.08298 5.12706 5.17331 5.20630 5.24293 5.32787 5.38607 5.46053 5.53768 5.58332 5.65250 5.66324 6.04653 6.12367 6.50449 6.55524 6.70919 7.10252 7.25603 8.73825 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.017740 B = 0.002267 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.949734 B =12350.342161 C =13400.013913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.086 4.086 3 C -0.152 4.152 4 C -0.104 4.104 5 C -0.032 4.032 6 H 0.133 0.867 7 C 0.465 3.535 8 O -0.519 6.519 9 O -0.342 6.342 10 C 0.056 3.944 11 C 0.506 3.494 12 O -0.575 6.575 13 N -0.698 5.698 14 C 0.233 3.767 15 C -0.548 4.548 16 H 0.061 0.939 17 C 0.026 3.974 18 N -0.930 5.930 19 Si 0.938 3.062 20 H -0.264 1.264 21 H -0.274 1.274 22 H -0.258 1.258 23 C -0.082 4.082 24 C -0.103 4.103 25 C -0.131 4.131 26 C -0.122 4.122 27 C -0.126 4.126 28 C -0.115 4.115 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.051 0.949 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.121 0.879 39 H 0.121 0.879 40 H 0.412 0.588 41 H 0.018 0.982 42 H 0.017 0.983 43 H 0.273 0.727 44 H 0.110 0.890 45 H 0.134 0.866 46 H 0.142 0.858 47 H 0.145 0.855 48 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.845 -1.579 32.649 32.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.104 4.104 3 C -0.210 4.210 4 C -0.141 4.141 5 C -0.051 4.051 6 H 0.150 0.850 7 C 0.309 3.691 8 O -0.407 6.407 9 O -0.257 6.257 10 C -0.020 4.020 11 C 0.291 3.709 12 O -0.455 6.455 13 N -0.349 5.349 14 C 0.109 3.891 15 C -0.586 4.586 16 H 0.079 0.921 17 C -0.175 4.175 18 N -0.569 5.569 19 Si 0.761 3.239 20 H -0.189 1.189 21 H -0.199 1.199 22 H -0.182 1.182 23 C -0.082 4.082 24 C -0.122 4.122 25 C -0.149 4.149 26 C -0.140 4.140 27 C -0.144 4.144 28 C -0.132 4.132 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.138 0.862 39 H 0.138 0.862 40 H 0.249 0.751 41 H 0.036 0.964 42 H 0.034 0.966 43 H 0.082 0.918 44 H 0.128 0.872 45 H 0.152 0.848 46 H 0.160 0.840 47 H 0.163 0.837 48 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -4.092 -1.155 32.489 32.766 hybrid contribution 0.105 -0.080 -1.123 1.131 sum -3.987 -1.235 31.366 31.642 Atomic orbital electron populations 1.21831 0.94573 1.01907 1.02172 1.21022 0.96124 0.96418 0.96865 1.21936 1.01367 0.95450 1.02206 1.21710 0.90125 1.02016 1.00262 1.20156 0.99059 1.00494 0.85411 0.84981 1.24226 0.76530 0.82707 0.85651 1.90679 1.38495 1.23988 1.87535 1.86556 1.71724 1.52423 1.15030 1.22721 1.02198 0.96446 0.80675 1.20528 0.79639 0.85907 0.84776 1.90675 1.41479 1.26852 1.86521 1.45870 1.55886 1.27792 1.05348 1.19174 0.95474 0.91378 0.83039 1.21270 1.36652 1.10076 0.90623 0.92117 1.25610 0.95896 1.00844 0.95110 1.69983 1.46458 1.41340 0.99123 0.85851 0.79803 0.79851 0.78373 1.18933 1.19900 1.18241 1.19275 0.99531 0.94309 0.95063 1.21000 0.99549 0.93613 0.97997 1.21354 0.98878 1.00352 0.94355 1.21490 0.97299 0.96169 0.98994 1.21417 1.00144 0.94133 0.98677 1.21258 0.97091 1.00941 0.93947 0.92944 0.92673 0.91661 0.90572 0.91643 0.92100 0.93008 0.91255 0.90820 0.86156 0.86162 0.75147 0.96444 0.96554 0.91810 0.87239 0.84823 0.84011 0.83726 0.84350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.19 71.98 0.66 -1.29 16 2 C -0.09 -1.19 2.81 -10.79 -0.03 -1.22 16 3 C -0.15 -1.97 8.95 71.98 0.64 -1.33 16 4 C -0.10 -1.80 4.01 30.59 0.12 -1.68 16 5 C -0.03 -0.61 2.35 -12.29 -0.03 -0.64 16 6 H 0.13 2.10 6.08 -2.39 -0.01 2.08 16 7 C 0.47 11.74 7.13 71.24 0.51 12.25 16 8 O -0.52 -14.95 14.88 21.95 0.33 -14.62 16 9 O -0.34 -9.86 9.56 -44.99 -0.43 -10.29 16 10 C 0.06 1.56 5.94 71.23 0.42 1.99 16 11 C 0.51 18.68 7.91 87.66 0.69 19.37 16 12 O -0.58 -25.97 16.50 15.79 0.26 -25.71 16 13 N -0.70 -27.09 5.55 -466.80 -2.59 -29.68 16 14 C 0.23 11.16 4.50 85.64 0.39 11.54 16 15 C -0.55 -29.78 9.83 25.60 0.25 -29.53 16 16 H 0.06 3.46 7.84 -2.91 -0.02 3.44 16 17 C 0.03 1.45 5.47 84.65 0.46 1.91 16 18 N -0.93 -55.13 13.96 21.45 0.30 -54.83 16 19 Si 0.94 43.41 27.47 68.60 1.88 45.29 16 20 H -0.26 -11.84 7.11 99.48 0.71 -11.14 16 21 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 22 H -0.26 -11.78 6.54 99.48 0.65 -11.13 16 23 C -0.08 -1.49 3.30 -19.87 -0.07 -1.55 16 24 C -0.10 -1.99 7.89 22.27 0.18 -1.82 16 25 C -0.13 -2.14 10.05 22.27 0.22 -1.92 16 26 C -0.12 -1.67 10.05 22.27 0.22 -1.45 16 27 C -0.13 -1.67 10.05 22.27 0.22 -1.45 16 28 C -0.11 -1.73 9.67 22.27 0.22 -1.52 16 29 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.08 1.05 7.23 -2.39 -0.02 1.03 16 33 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.06 0.71 6.46 -2.39 -0.02 0.70 16 35 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.07 1.21 7.21 -2.39 -0.02 1.19 16 37 H 0.07 1.48 7.99 -2.39 -0.02 1.47 16 38 H 0.12 2.84 8.13 -2.39 -0.02 2.82 16 39 H 0.12 2.83 8.13 -2.39 -0.02 2.81 16 40 H 0.41 13.76 8.32 -92.71 -0.77 12.99 16 41 H 0.02 0.88 7.20 -2.39 -0.02 0.87 16 42 H 0.02 0.82 7.57 -2.39 -0.02 0.80 16 43 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 44 H 0.11 2.21 7.49 -2.91 -0.02 2.18 16 45 H 0.13 1.71 8.06 -2.91 -0.02 1.69 16 46 H 0.14 1.25 8.06 -2.91 -0.02 1.23 16 47 H 0.14 1.19 8.06 -2.91 -0.02 1.17 16 48 H 0.14 1.53 7.95 -2.91 -0.02 1.51 16 Total: -1.00 -71.06 398.55 4.97 -66.09 By element: Atomic # 1 Polarization: 21.94 SS G_CDS: 0.13 Total: 22.07 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: 5.09 Total: 1.68 kcal Atomic # 7 Polarization: -82.22 SS G_CDS: -2.29 Total: -84.51 kcal Atomic # 8 Polarization: -50.78 SS G_CDS: 0.16 Total: -50.62 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 1.88 Total: 45.29 kcal Total: -71.06 4.97 -66.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741052071.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.884 kcal (2) G-P(sol) polarization free energy of solvation -71.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds