Wall clock time and date at job start Tue Mar 31 2020 19:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47350 * 2 1 4 4 C 1.52998 * 109.47495 * 120.00129 * 2 1 3 5 5 C 1.53001 * 109.47274 * 174.80197 * 4 2 1 6 6 H 1.08997 * 109.47307 * 55.16490 * 5 4 2 7 7 C 1.50694 * 109.47378 * 175.17341 * 5 4 2 8 8 O 1.20828 * 120.00436 * 85.35058 * 7 5 4 9 9 O 1.34225 * 119.99948 * 265.35531 * 7 5 4 10 10 C 1.45208 * 117.00312 * 174.81855 * 9 7 5 11 11 C 1.50696 * 109.47240 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00355 * 359.97438 * 11 10 9 13 13 N 1.34783 * 120.00009 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99822 * 179.97438 * 13 11 10 15 15 C 1.50699 * 109.46735 * 179.97438 * 14 13 11 16 16 H 1.08005 * 120.00113 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00199 * 179.97438 * 15 14 13 18 18 N 1.31518 * 119.99612 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00432 * 180.02562 * 17 15 14 20 20 H 1.48510 * 109.46955 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.47066 * 120.00164 * 19 17 15 22 22 H 1.48500 * 109.47376 * 240.00639 * 19 17 15 23 23 C 1.50704 * 109.46791 * 295.16928 * 5 4 2 24 24 C 1.38229 * 120.00470 * 299.72891 * 23 5 4 25 25 C 1.38231 * 120.00491 * 179.79014 * 24 23 5 26 26 C 1.38238 * 119.99799 * 0.44003 * 25 24 23 27 27 C 1.38235 * 119.99769 * 359.81128 * 26 25 24 28 28 C 1.38228 * 120.00313 * 359.97438 * 27 26 25 29 29 H 1.09005 * 109.46782 * 299.99615 * 1 2 3 30 30 H 1.08997 * 109.47296 * 59.99662 * 1 2 3 31 31 H 1.08997 * 109.46829 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47187 * 240.00651 * 2 1 3 33 33 H 1.09002 * 109.46905 * 59.68052 * 3 2 1 34 34 H 1.08998 * 109.47680 * 179.68675 * 3 2 1 35 35 H 1.09002 * 109.46923 * 299.68931 * 3 2 1 36 36 H 1.08997 * 109.47305 * 54.80191 * 4 2 1 37 37 H 1.08999 * 109.47203 * 294.80027 * 4 2 1 38 38 H 1.08992 * 109.46836 * 300.00277 * 10 9 7 39 39 H 1.09000 * 109.46952 * 59.99616 * 10 9 7 40 40 H 0.96997 * 119.99450 * 0.02562 * 13 11 10 41 41 H 1.08998 * 109.47406 * 299.99524 * 14 13 11 42 42 H 1.08995 * 109.47073 * 60.00646 * 14 13 11 43 43 H 0.97004 * 119.99555 * 179.97438 * 18 17 15 44 44 H 1.08003 * 119.99752 * 359.97438 * 24 23 5 45 45 H 1.08001 * 120.00540 * 180.27417 * 25 24 23 46 46 H 1.07993 * 120.00381 * 179.83546 * 26 25 24 47 47 H 1.08000 * 119.99805 * 180.02562 * 27 26 25 48 48 H 1.08004 * 120.00698 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5645 -0.8354 1.1855 6 1 3.9978 0.1557 1.0513 7 6 4.0771 -1.4385 2.4678 8 8 4.1146 -2.6391 2.5982 9 8 4.4921 -0.6419 3.4653 10 6 4.8638 -1.2862 4.7124 11 6 5.2994 -0.2414 5.7072 12 8 5.2973 0.9308 5.3958 13 7 5.6923 -0.6096 6.9427 14 6 6.1163 0.4060 7.9096 15 6 6.5020 -0.2627 9.2039 16 1 6.4380 -1.3368 9.2968 17 6 6.9374 0.4966 10.2692 18 7 7.0157 1.8046 10.1559 19 14 7.4161 -0.3322 11.8733 20 1 7.2401 -1.8011 11.7432 21 1 8.8369 -0.0298 12.1820 22 1 6.5524 0.1750 12.9696 23 6 3.9543 -1.7152 0.0256 24 6 3.5235 -3.0278 -0.0216 25 6 3.8774 -3.8335 -1.0876 26 6 4.6698 -3.3292 -2.1020 27 6 5.1049 -2.0180 -2.0521 28 6 4.7473 -1.2110 -0.9884 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5137 -0.8900 33 1 1.6720 1.9580 0.8871 34 1 3.1300 1.4426 0.0056 35 1 1.6813 1.9547 -0.8928 36 1 1.6028 -1.7185 1.2970 37 1 1.7548 -0.1565 2.1367 38 1 4.0071 -1.8306 5.1094 39 1 5.6840 -1.9810 4.5319 40 1 5.6950 -1.5472 7.1914 41 1 6.9728 0.9507 7.5124 42 1 5.2959 1.1005 8.0903 43 1 7.3217 2.3388 10.9055 44 1 2.9079 -3.4230 0.7729 45 1 3.5372 -4.8577 -1.1268 46 1 4.9485 -3.9593 -2.9335 47 1 5.7235 -1.6239 -2.8448 48 1 5.0875 -0.1868 -0.9491 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000741052072.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:01 Heat of formation + Delta-G solvation = -121.469722 kcal Electronic energy + Delta-G solvation = -28020.063567 eV Core-core repulsion = 24039.194333 eV Total energy + Delta-G solvation = -3980.869235 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.04611 -39.52336 -38.62154 -37.06595 -36.31456 -34.25933 -33.09103 -32.41974 -31.12846 -29.69869 -28.86131 -27.43577 -26.75519 -25.11654 -22.94873 -22.76558 -22.25826 -20.71859 -19.98262 -19.84437 -17.84160 -17.59130 -16.98145 -16.64700 -16.29002 -15.75553 -15.48554 -15.36708 -15.08184 -14.79749 -14.63506 -14.32102 -14.07376 -13.84101 -13.60435 -13.31176 -13.02743 -12.91027 -12.77138 -12.48473 -12.41171 -12.30120 -12.01227 -11.93978 -11.77986 -11.44533 -11.32490 -11.16479 -11.00136 -10.95605 -10.91970 -10.83522 -10.70239 -10.36452 -10.34978 -9.43545 -9.20108 -9.10580 -8.98562 -8.79921 -8.00171 -6.20940 -4.28227 1.03402 1.20895 2.06759 2.44292 3.16546 3.21519 3.28746 3.31758 3.57049 3.95357 4.20886 4.31255 4.41527 4.56528 4.66543 4.70809 4.78913 4.83583 4.92296 4.98278 5.08232 5.14200 5.15345 5.22768 5.27031 5.33185 5.34653 5.38974 5.41796 5.48055 5.59962 5.64438 5.69348 5.75582 5.84419 5.88876 6.03596 6.12048 6.22566 6.28814 6.33546 6.38271 6.76708 7.21297 7.29597 7.44485 7.57927 7.67242 7.90646 8.48674 8.70016 8.95157 9.38230 10.89237 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.017524 B = 0.002121 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.444752 B =13200.321123 C =14003.005439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 C -0.153 4.153 4 C -0.103 4.103 5 C -0.040 4.040 6 H 0.115 0.885 7 C 0.467 3.533 8 O -0.504 6.504 9 O -0.326 6.326 10 C 0.048 3.952 11 C 0.500 3.500 12 O -0.534 6.534 13 N -0.707 5.707 14 C 0.251 3.749 15 C -0.544 4.544 16 H 0.065 0.935 17 C 0.063 3.937 18 N -0.884 5.884 19 Si 0.905 3.095 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.282 1.282 23 C -0.081 4.081 24 C -0.083 4.083 25 C -0.125 4.125 26 C -0.117 4.117 27 C -0.125 4.125 28 C -0.106 4.106 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.075 0.925 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.393 0.607 41 H 0.029 0.971 42 H 0.030 0.970 43 H 0.266 0.734 44 H 0.129 0.871 45 H 0.121 0.879 46 H 0.120 0.880 47 H 0.122 0.878 48 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.299 -8.429 -25.387 28.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.111 4.111 3 C -0.210 4.210 4 C -0.140 4.140 5 C -0.059 4.059 6 H 0.133 0.867 7 C 0.309 3.691 8 O -0.391 6.391 9 O -0.241 6.241 10 C -0.030 4.030 11 C 0.282 3.718 12 O -0.411 6.411 13 N -0.357 5.357 14 C 0.131 3.869 15 C -0.583 4.583 16 H 0.083 0.917 17 C -0.140 4.140 18 N -0.522 5.522 19 Si 0.732 3.268 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.208 1.208 23 C -0.081 4.081 24 C -0.101 4.101 25 C -0.143 4.143 26 C -0.135 4.135 27 C -0.143 4.143 28 C -0.124 4.124 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.094 0.906 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.114 0.886 39 H 0.115 0.885 40 H 0.226 0.774 41 H 0.047 0.953 42 H 0.048 0.952 43 H 0.076 0.924 44 H 0.146 0.854 45 H 0.139 0.861 46 H 0.138 0.862 47 H 0.140 0.860 48 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -10.202 -7.741 -25.404 28.450 hybrid contribution 0.457 -1.015 1.196 1.633 sum -9.745 -8.756 -24.209 27.526 Atomic orbital electron populations 1.21827 0.94859 1.01769 1.01985 1.21074 0.95861 0.96458 0.97668 1.21938 1.01323 0.95641 1.02107 1.21677 0.90474 1.02106 0.99769 1.20005 0.98216 1.00348 0.87330 0.86677 1.23590 0.74178 0.85875 0.85420 1.90646 1.50956 1.16104 1.81431 1.86578 1.75385 1.40458 1.21690 1.22876 1.02326 0.95414 0.82352 1.19888 0.79444 0.89222 0.83206 1.90708 1.53805 1.18538 1.78060 1.46370 1.65015 1.12230 1.12077 1.19180 0.95716 0.86683 0.85354 1.21243 1.46322 0.93859 0.96842 0.91722 1.24959 0.95111 0.94831 0.99137 1.69987 1.45659 1.04527 1.32001 0.86336 0.78242 0.79484 0.82701 1.19606 1.20759 1.20755 1.19314 0.99300 0.94462 0.95022 1.21122 0.98761 0.92869 0.97337 1.21158 0.98903 0.99857 0.94385 1.21187 0.97857 0.95687 0.98744 1.21086 1.00548 0.94216 0.98466 1.21064 0.97274 1.00054 0.93973 0.92451 0.92545 0.92707 0.90643 0.92197 0.92347 0.92611 0.90735 0.90277 0.88584 0.88511 0.77433 0.95254 0.95242 0.92423 0.85353 0.86056 0.86207 0.85983 0.85820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.19 37.16 0.34 -0.65 16 2 C -0.09 -0.69 2.81 -90.62 -0.25 -0.94 16 3 C -0.15 -1.13 8.97 37.16 0.33 -0.80 16 4 C -0.10 -0.91 4.03 -26.73 -0.11 -1.02 16 5 C -0.04 -0.41 2.35 -92.92 -0.22 -0.63 16 6 H 0.12 1.11 6.09 -51.93 -0.32 0.80 16 7 C 0.47 6.35 6.95 36.00 0.25 6.60 16 8 O -0.50 -7.49 14.32 -18.75 -0.27 -7.76 16 9 O -0.33 -5.17 9.76 -45.89 -0.45 -5.62 16 10 C 0.05 0.73 5.97 36.00 0.21 0.95 16 11 C 0.50 10.03 7.91 -10.98 -0.09 9.94 16 12 O -0.53 -13.02 16.50 -14.10 -0.23 -13.25 16 13 N -0.71 -14.62 5.55 -61.48 -0.34 -14.97 16 14 C 0.25 6.55 5.43 -5.19 -0.03 6.52 16 15 C -0.54 -14.56 9.28 -34.44 -0.32 -14.88 16 16 H 0.06 1.62 7.60 -52.48 -0.40 1.22 16 17 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 18 N -0.88 -25.79 13.29 55.43 0.74 -25.06 16 19 Si 0.91 20.66 29.54 -169.99 -5.02 15.64 16 20 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 21 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 C -0.08 -0.82 3.61 -104.62 -0.38 -1.19 16 24 C -0.08 -0.85 7.95 -39.59 -0.31 -1.16 16 25 C -0.13 -1.12 10.05 -39.58 -0.40 -1.52 16 26 C -0.12 -0.96 10.05 -39.58 -0.40 -1.35 16 27 C -0.13 -1.03 10.05 -39.59 -0.40 -1.43 16 28 C -0.11 -0.96 9.67 -39.58 -0.38 -1.34 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.08 0.59 7.22 -51.93 -0.37 0.21 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.43 6.46 -51.93 -0.34 0.10 16 35 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.07 0.65 7.25 -51.93 -0.38 0.27 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.10 1.33 8.09 -51.93 -0.42 0.91 16 40 H 0.39 6.84 8.32 -40.82 -0.34 6.50 16 41 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 44 H 0.13 1.36 6.65 -52.48 -0.35 1.01 16 45 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 46 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 47 H 0.12 0.76 8.06 -52.49 -0.42 0.33 16 48 H 0.12 0.93 7.95 -52.48 -0.42 0.51 16 LS Contribution 401.35 15.07 6.05 6.05 Total: -1.00 -33.20 401.35 -9.30 -42.50 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -7.54 Total: 3.74 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: -2.24 Total: -1.27 kcal Atomic # 7 Polarization: -40.42 SS G_CDS: 0.40 Total: -40.02 kcal Atomic # 8 Polarization: -25.69 SS G_CDS: -0.95 Total: -26.63 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.20 -9.30 -42.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741052072.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.970 kcal (2) G-P(sol) polarization free energy of solvation -33.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds