Wall clock time and date at job start Tue Mar 31 2020 19:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47350 * 2 1 4 4 C 1.52998 * 109.47495 * 120.00129 * 2 1 3 5 5 C 1.53001 * 109.47274 * 174.80197 * 4 2 1 6 6 H 1.08997 * 109.47307 * 55.16490 * 5 4 2 7 7 C 1.50694 * 109.47378 * 175.17341 * 5 4 2 8 8 O 1.20828 * 120.00436 * 85.35058 * 7 5 4 9 9 O 1.34225 * 119.99948 * 265.35531 * 7 5 4 10 10 C 1.45208 * 117.00312 * 174.81855 * 9 7 5 11 11 C 1.50696 * 109.47240 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00355 * 359.97438 * 11 10 9 13 13 N 1.34783 * 120.00009 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99822 * 179.97438 * 13 11 10 15 15 C 1.50699 * 109.46735 * 179.97438 * 14 13 11 16 16 H 1.08005 * 120.00113 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00199 * 179.97438 * 15 14 13 18 18 N 1.31518 * 119.99612 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00432 * 180.02562 * 17 15 14 20 20 H 1.48510 * 109.46955 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.47066 * 120.00164 * 19 17 15 22 22 H 1.48500 * 109.47376 * 240.00639 * 19 17 15 23 23 C 1.50704 * 109.46791 * 295.16928 * 5 4 2 24 24 C 1.38229 * 120.00470 * 299.72891 * 23 5 4 25 25 C 1.38231 * 120.00491 * 179.79014 * 24 23 5 26 26 C 1.38238 * 119.99799 * 0.44003 * 25 24 23 27 27 C 1.38235 * 119.99769 * 359.81128 * 26 25 24 28 28 C 1.38228 * 120.00313 * 359.97438 * 27 26 25 29 29 H 1.09005 * 109.46782 * 299.99615 * 1 2 3 30 30 H 1.08997 * 109.47296 * 59.99662 * 1 2 3 31 31 H 1.08997 * 109.46829 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47187 * 240.00651 * 2 1 3 33 33 H 1.09002 * 109.46905 * 59.68052 * 3 2 1 34 34 H 1.08998 * 109.47680 * 179.68675 * 3 2 1 35 35 H 1.09002 * 109.46923 * 299.68931 * 3 2 1 36 36 H 1.08997 * 109.47305 * 54.80191 * 4 2 1 37 37 H 1.08999 * 109.47203 * 294.80027 * 4 2 1 38 38 H 1.08992 * 109.46836 * 300.00277 * 10 9 7 39 39 H 1.09000 * 109.46952 * 59.99616 * 10 9 7 40 40 H 0.96997 * 119.99450 * 0.02562 * 13 11 10 41 41 H 1.08998 * 109.47406 * 299.99524 * 14 13 11 42 42 H 1.08995 * 109.47073 * 60.00646 * 14 13 11 43 43 H 0.97004 * 119.99555 * 179.97438 * 18 17 15 44 44 H 1.08003 * 119.99752 * 359.97438 * 24 23 5 45 45 H 1.08001 * 120.00540 * 180.27417 * 25 24 23 46 46 H 1.07993 * 120.00381 * 179.83546 * 26 25 24 47 47 H 1.08000 * 119.99805 * 180.02562 * 27 26 25 48 48 H 1.08004 * 120.00698 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5645 -0.8354 1.1855 6 1 3.9978 0.1557 1.0513 7 6 4.0771 -1.4385 2.4678 8 8 4.1146 -2.6391 2.5982 9 8 4.4921 -0.6419 3.4653 10 6 4.8638 -1.2862 4.7124 11 6 5.2994 -0.2414 5.7072 12 8 5.2973 0.9308 5.3958 13 7 5.6923 -0.6096 6.9427 14 6 6.1163 0.4060 7.9096 15 6 6.5020 -0.2627 9.2039 16 1 6.4380 -1.3368 9.2968 17 6 6.9374 0.4966 10.2692 18 7 7.0157 1.8046 10.1559 19 14 7.4161 -0.3322 11.8733 20 1 7.2401 -1.8011 11.7432 21 1 8.8369 -0.0298 12.1820 22 1 6.5524 0.1750 12.9696 23 6 3.9543 -1.7152 0.0256 24 6 3.5235 -3.0278 -0.0216 25 6 3.8774 -3.8335 -1.0876 26 6 4.6698 -3.3292 -2.1020 27 6 5.1049 -2.0180 -2.0521 28 6 4.7473 -1.2110 -0.9884 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5137 -0.8900 33 1 1.6720 1.9580 0.8871 34 1 3.1300 1.4426 0.0056 35 1 1.6813 1.9547 -0.8928 36 1 1.6028 -1.7185 1.2970 37 1 1.7548 -0.1565 2.1367 38 1 4.0071 -1.8306 5.1094 39 1 5.6840 -1.9810 4.5319 40 1 5.6950 -1.5472 7.1914 41 1 6.9728 0.9507 7.5124 42 1 5.2959 1.1005 8.0903 43 1 7.3217 2.3388 10.9055 44 1 2.9079 -3.4230 0.7729 45 1 3.5372 -4.8577 -1.1268 46 1 4.9485 -3.9593 -2.9335 47 1 5.7235 -1.6239 -2.8448 48 1 5.0875 -0.1868 -0.9491 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000741052072.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:00 Heat of formation + Delta-G solvation = -139.545332 kcal Electronic energy + Delta-G solvation = -28020.847384 eV Core-core repulsion = 24039.194333 eV Total energy + Delta-G solvation = -3981.653052 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.08527 -40.68279 -39.95436 -37.82642 -37.42990 -36.19847 -34.43113 -33.80593 -31.78479 -30.99521 -29.90627 -28.50193 -28.01237 -25.99188 -24.64454 -23.54117 -23.25476 -21.67753 -21.59305 -20.58726 -19.24211 -18.91981 -17.99814 -17.82237 -17.57520 -17.12514 -16.88594 -16.49201 -16.24899 -15.97439 -15.83105 -15.44248 -14.94435 -14.78794 -14.45975 -14.41624 -14.22254 -14.16625 -13.95555 -13.68778 -13.54599 -13.36108 -13.12576 -12.97735 -12.92315 -12.76529 -12.56536 -12.23509 -12.18225 -11.95889 -11.93846 -11.83413 -11.59911 -11.48119 -11.47990 -11.28074 -10.92536 -10.84094 -9.94904 -9.77860 -9.67968 -8.30716 -6.47173 0.33062 0.53790 0.99967 1.29747 1.44240 1.44328 1.52966 1.58129 2.32609 2.53686 2.91618 3.04627 3.42090 3.55498 3.69992 3.80765 3.96373 4.01046 4.02112 4.06994 4.09819 4.20337 4.27484 4.33330 4.42887 4.63495 4.71053 4.75356 4.79241 4.86855 4.95634 5.02411 5.06065 5.07609 5.12247 5.18216 5.20600 5.23638 5.31651 5.40502 5.45763 5.51739 5.58032 5.61631 5.65090 5.67561 5.81003 6.11712 6.53689 6.61949 6.76479 7.19032 7.33834 8.81619 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.017524 B = 0.002121 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.444752 B =13200.321123 C =14003.005439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.154 4.154 4 C -0.099 4.099 5 C -0.034 4.034 6 H 0.120 0.880 7 C 0.468 3.532 8 O -0.517 6.517 9 O -0.346 6.346 10 C 0.059 3.941 11 C 0.500 3.500 12 O -0.582 6.582 13 N -0.699 5.699 14 C 0.266 3.734 15 C -0.556 4.556 16 H 0.086 0.914 17 C 0.004 3.996 18 N -0.930 5.930 19 Si 0.985 3.015 20 H -0.253 1.253 21 H -0.279 1.279 22 H -0.279 1.279 23 C -0.092 4.092 24 C -0.099 4.099 25 C -0.133 4.133 26 C -0.119 4.119 27 C -0.128 4.128 28 C -0.115 4.115 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.052 0.948 34 H 0.056 0.944 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.125 0.875 39 H 0.120 0.880 40 H 0.412 0.588 41 H -0.008 1.008 42 H -0.007 1.007 43 H 0.269 0.731 44 H 0.119 0.881 45 H 0.136 0.864 46 H 0.143 0.857 47 H 0.144 0.856 48 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.375 -10.597 -26.314 30.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.103 4.103 3 C -0.211 4.211 4 C -0.137 4.137 5 C -0.053 4.053 6 H 0.138 0.862 7 C 0.311 3.689 8 O -0.405 6.405 9 O -0.262 6.262 10 C -0.018 4.018 11 C 0.286 3.714 12 O -0.463 6.463 13 N -0.350 5.350 14 C 0.144 3.856 15 C -0.593 4.593 16 H 0.104 0.896 17 C -0.196 4.196 18 N -0.568 5.568 19 Si 0.808 3.192 20 H -0.177 1.177 21 H -0.205 1.205 22 H -0.205 1.205 23 C -0.092 4.092 24 C -0.117 4.117 25 C -0.151 4.151 26 C -0.137 4.137 27 C -0.146 4.146 28 C -0.133 4.133 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.094 0.906 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.143 0.857 39 H 0.138 0.862 40 H 0.248 0.752 41 H 0.010 0.990 42 H 0.011 0.989 43 H 0.078 0.922 44 H 0.137 0.863 45 H 0.154 0.846 46 H 0.161 0.839 47 H 0.162 0.838 48 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -10.294 -9.966 -26.355 29.998 hybrid contribution 0.471 -0.332 1.378 1.494 sum -9.823 -10.299 -24.977 28.748 Atomic orbital electron populations 1.21822 0.94192 1.02047 1.02293 1.21011 0.96328 0.96201 0.96791 1.21950 1.01269 0.95620 1.02263 1.21679 0.89489 1.02232 1.00273 1.20091 0.98952 1.00435 0.85853 0.86230 1.24206 0.73450 0.85709 0.85516 1.90633 1.51566 1.16623 1.81646 1.86584 1.75895 1.41575 1.22145 1.22742 1.04223 0.93348 0.81474 1.20668 0.77843 0.89580 0.83357 1.90684 1.55565 1.21087 1.78921 1.46051 1.64945 1.12230 1.11804 1.18637 0.92999 0.87272 0.86703 1.21631 1.45954 0.94917 0.96839 0.89636 1.26056 0.94812 0.95363 1.03358 1.70141 1.46749 1.06488 1.33439 0.85103 0.77648 0.79124 0.77290 1.17668 1.20505 1.20453 1.19327 1.00195 0.94487 0.95218 1.21155 0.99399 0.93292 0.97827 1.21403 0.98974 1.00527 0.94216 1.21514 0.97077 0.96024 0.99045 1.21411 1.00333 0.94237 0.98631 1.21286 0.97051 1.00892 0.94025 0.92712 0.91674 0.92462 0.90614 0.92907 0.92470 0.91598 0.90718 0.90949 0.85739 0.86201 0.75151 0.98978 0.98884 0.92193 0.86320 0.84604 0.83896 0.83817 0.84691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.19 71.98 0.66 -1.17 16 2 C -0.08 -1.20 2.81 -10.79 -0.03 -1.23 16 3 C -0.15 -2.17 8.97 71.98 0.65 -1.53 16 4 C -0.10 -1.72 4.03 30.59 0.12 -1.60 16 5 C -0.03 -0.70 2.35 -12.29 -0.03 -0.73 16 6 H 0.12 2.29 6.09 -2.39 -0.01 2.27 16 7 C 0.47 12.46 6.95 71.23 0.49 12.96 16 8 O -0.52 -14.91 14.32 21.96 0.31 -14.59 16 9 O -0.35 -10.85 9.76 -45.01 -0.44 -11.29 16 10 C 0.06 1.74 5.97 71.23 0.43 2.17 16 11 C 0.50 20.25 7.91 87.65 0.69 20.94 16 12 O -0.58 -29.44 16.50 15.77 0.26 -29.18 16 13 N -0.70 -29.06 5.55 -466.80 -2.59 -31.65 16 14 C 0.27 14.41 5.43 85.63 0.46 14.88 16 15 C -0.56 -29.75 9.28 25.60 0.24 -29.52 16 16 H 0.09 4.12 7.60 -2.91 -0.02 4.10 16 17 C 0.00 0.21 5.46 84.65 0.46 0.67 16 18 N -0.93 -55.52 13.29 21.45 0.28 -55.23 16 19 Si 0.99 41.92 29.54 68.60 2.03 43.94 16 20 H -0.25 -9.95 7.11 99.48 0.71 -9.24 16 21 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 22 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 23 C -0.09 -1.78 3.61 -19.86 -0.07 -1.85 16 24 C -0.10 -1.95 7.95 22.27 0.18 -1.77 16 25 C -0.13 -2.19 10.05 22.27 0.22 -1.97 16 26 C -0.12 -1.68 10.05 22.27 0.22 -1.45 16 27 C -0.13 -1.84 10.05 22.27 0.22 -1.61 16 28 C -0.11 -1.91 9.67 22.27 0.22 -1.70 16 29 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 30 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.06 0.68 8.14 -2.39 -0.02 0.67 16 32 H 0.08 1.10 7.22 -2.39 -0.02 1.08 16 33 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.06 0.81 6.46 -2.39 -0.02 0.80 16 35 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.07 1.28 7.25 -2.39 -0.02 1.27 16 37 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.12 3.01 8.14 -2.39 -0.02 2.99 16 39 H 0.12 3.04 8.09 -2.39 -0.02 3.02 16 40 H 0.41 13.83 8.32 -92.71 -0.77 13.06 16 41 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 42 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 43 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 44 H 0.12 2.49 6.65 -2.91 -0.02 2.47 16 45 H 0.14 1.72 8.06 -2.91 -0.02 1.70 16 46 H 0.14 1.30 8.06 -2.91 -0.02 1.27 16 47 H 0.14 1.37 8.06 -2.91 -0.02 1.35 16 48 H 0.14 1.84 7.95 -2.91 -0.02 1.82 16 Total: -1.00 -73.53 401.35 5.18 -68.34 By element: Atomic # 1 Polarization: 24.00 SS G_CDS: 0.19 Total: 24.18 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: 5.14 Total: 5.48 kcal Atomic # 7 Polarization: -84.58 SS G_CDS: -2.30 Total: -86.88 kcal Atomic # 8 Polarization: -55.20 SS G_CDS: 0.14 Total: -55.06 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.94 kcal Total: -73.53 5.18 -68.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741052072.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.201 kcal (2) G-P(sol) polarization free energy of solvation -73.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds