Wall clock time and date at job start Tue Mar 31 2020 17:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38234 * 120.00260 * 2 1 4 4 C 1.38234 * 120.00240 * 179.97438 * 3 2 1 5 5 C 1.38233 * 120.00037 * 0.26327 * 4 3 2 6 6 C 1.50693 * 120.00207 * 179.72405 * 5 4 3 7 7 C 1.52997 * 109.47229 * 89.99423 * 6 5 4 8 8 C 1.50707 * 109.47230 * 180.02562 * 7 6 5 9 9 O 1.21281 * 119.99923 * 359.97438 * 8 7 6 10 10 N 1.34778 * 119.99810 * 180.02562 * 8 7 6 11 11 C 1.46505 * 119.99637 * 180.02562 * 10 8 7 12 12 C 1.50695 * 109.46906 * 179.97438 * 11 10 8 13 13 O 1.20822 * 120.00207 * 359.97438 * 12 11 10 14 14 O 1.34228 * 119.99877 * 180.02562 * 12 11 10 15 15 C 1.45199 * 117.00046 * 179.97438 * 14 12 11 16 16 C 1.53007 * 109.47233 * 179.97438 * 15 14 12 17 17 C 1.52995 * 109.47079 * 179.97438 * 16 15 14 18 18 C 1.50699 * 109.47225 * 180.02562 * 17 16 15 19 19 H 1.08000 * 119.99454 * 0.02562 * 18 17 16 20 20 C 1.37878 * 120.00108 * 179.97438 * 18 17 16 21 21 N 1.31511 * 120.00321 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99854 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46852 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.46927 * 119.99908 * 22 20 18 25 25 H 1.48493 * 109.47417 * 240.00378 * 22 20 18 26 26 C 1.38238 * 119.99752 * 359.47832 * 5 4 3 27 27 C 1.38234 * 120.00033 * 0.49775 * 26 5 4 28 28 H 1.09000 * 109.46827 * 89.99810 * 1 2 3 29 29 H 1.08999 * 109.47240 * 210.00239 * 1 2 3 30 30 H 1.08999 * 109.46861 * 329.99859 * 1 2 3 31 31 H 1.07999 * 119.99751 * 359.97438 * 3 2 1 32 32 H 1.08002 * 119.99744 * 179.97438 * 4 3 2 33 33 H 1.09000 * 109.47097 * 209.99342 * 6 5 4 34 34 H 1.09001 * 109.47081 * 329.99847 * 6 5 4 35 35 H 1.09004 * 109.47454 * 300.00132 * 7 6 5 36 36 H 1.09006 * 109.47180 * 60.00059 * 7 6 5 37 37 H 0.97001 * 120.00324 * 359.97438 * 10 8 7 38 38 H 1.09000 * 109.47064 * 299.99522 * 11 10 8 39 39 H 1.08998 * 109.47074 * 59.99410 * 11 10 8 40 40 H 1.09004 * 109.47087 * 299.99470 * 15 14 12 41 41 H 1.09003 * 109.47093 * 59.99463 * 15 14 12 42 42 H 1.08997 * 109.46726 * 300.00111 * 16 15 14 43 43 H 1.08995 * 109.46482 * 59.99918 * 16 15 14 44 44 H 1.09004 * 109.47181 * 299.99945 * 17 16 15 45 45 H 1.09003 * 109.47153 * 60.00032 * 17 16 15 46 46 H 0.96995 * 120.00369 * 179.97438 * 21 20 18 47 47 H 1.07999 * 119.99934 * 180.25938 * 26 5 4 48 48 H 1.08001 * 120.00294 * 179.76453 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 0.0000 -0.0044 6 6 5.7787 0.0000 -0.0101 7 6 6.2941 -0.0027 1.4304 8 6 7.8012 -0.0021 1.4247 9 8 8.4036 -0.0002 0.3721 10 7 8.4795 -0.0047 2.5894 11 6 9.9445 -0.0036 2.5838 12 6 10.4522 -0.0064 4.0026 13 8 9.6706 -0.0086 4.9240 14 8 11.7728 -0.0053 4.2429 15 6 12.1898 -0.0076 5.6337 16 6 13.7180 -0.0067 5.7080 17 6 14.1574 -0.0084 7.1735 18 6 15.6626 -0.0068 7.2467 19 1 16.2473 -0.0044 6.3387 20 6 16.2932 -0.0074 8.4729 21 7 15.5811 -0.0099 9.5785 22 14 18.1590 -0.0063 8.5635 23 1 18.7213 -0.0041 7.1891 24 1 18.6186 1.2060 9.2878 25 1 18.6203 -1.2190 9.2856 26 6 3.5805 -1.1972 0.0010 27 6 2.1982 -1.1972 0.0009 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5139 31 1 1.6582 2.1324 -0.0004 32 1 4.1205 2.1325 0.0001 33 1 6.1400 -0.8891 -0.5270 34 1 6.1401 0.8909 -0.5236 35 1 5.9328 0.8863 1.9473 36 1 5.9327 -0.8937 1.9440 37 1 7.9977 -0.0066 3.4313 38 1 10.3066 -0.8919 2.0662 39 1 10.3052 0.8880 2.0709 40 1 11.8010 0.8811 6.1310 41 1 11.8028 -0.8989 6.1276 42 1 14.1064 -0.8955 5.2108 43 1 14.1051 0.8845 5.2140 44 1 13.7689 0.8807 7.6703 45 1 13.7701 -0.8993 7.6679 46 1 16.0247 -0.0107 10.4411 47 1 4.1205 -2.1325 0.0013 48 1 1.6582 -2.1325 0.0013 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000749312445.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:07 Heat of formation + Delta-G solvation = -132.210181 kcal Electronic energy + Delta-G solvation = -25908.445920 eV Core-core repulsion = 21927.110944 eV Total energy + Delta-G solvation = -3981.334976 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.74334 -40.08361 -39.51072 -36.83144 -35.11866 -34.71218 -34.06452 -31.88312 -31.71101 -31.31407 -29.20162 -27.44234 -26.64425 -24.05111 -23.23559 -23.11708 -21.22629 -20.96063 -20.65768 -20.38041 -18.11935 -17.31721 -16.86552 -16.70805 -16.31542 -16.28290 -16.05029 -15.54820 -15.51320 -15.18901 -14.56439 -14.49711 -14.25834 -13.98707 -13.84516 -13.68338 -13.18533 -13.02930 -12.93984 -12.81147 -12.60270 -12.23774 -12.15586 -11.97498 -11.93495 -11.62421 -11.42084 -11.20832 -11.02795 -10.79109 -10.71543 -10.52585 -10.51870 -10.29889 -9.80266 -9.56796 -9.54692 -9.31383 -9.19281 -8.87950 -8.42610 -6.07163 -4.10319 0.90835 1.01457 2.05521 2.28237 2.29079 3.08301 3.28050 3.35477 3.35794 3.40050 4.20320 4.37907 4.39828 4.46905 4.58180 4.61283 4.64355 4.64849 4.84131 4.90187 4.99236 5.07849 5.09239 5.14467 5.19472 5.25676 5.29148 5.36898 5.45353 5.47918 5.49911 5.64517 5.70841 5.78264 5.88156 5.93258 6.02628 6.20185 6.25318 6.34296 6.46824 6.62361 6.71786 6.91561 7.08438 7.55472 7.64360 7.65648 7.83419 7.90941 8.31678 8.96145 9.54465 11.04311 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.039257 B = 0.001252 C = 0.001231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.076228 B =22355.117694 C =22731.893822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.091 4.091 3 C -0.120 4.120 4 C -0.112 4.112 5 C -0.088 4.088 6 C -0.065 4.065 7 C -0.133 4.133 8 C 0.518 3.482 9 O -0.538 6.538 10 N -0.724 5.724 11 C 0.125 3.875 12 C 0.455 3.545 13 O -0.511 6.511 14 O -0.351 6.351 15 C 0.069 3.931 16 C -0.110 4.110 17 C 0.024 3.976 18 C -0.522 4.522 19 H 0.058 0.942 20 C 0.057 3.943 21 N -0.895 5.895 22 Si 0.895 3.105 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.283 1.283 26 C -0.112 4.112 27 C -0.120 4.120 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.121 0.879 32 H 0.123 0.877 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.413 0.587 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.020 0.980 45 H 0.020 0.980 46 H 0.261 0.739 47 H 0.123 0.877 48 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.664 0.017 -20.596 36.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.091 4.091 3 C -0.138 4.138 4 C -0.130 4.130 5 C -0.088 4.088 6 C -0.102 4.102 7 C -0.173 4.173 8 C 0.305 3.695 9 O -0.415 6.415 10 N -0.381 5.381 11 C 0.000 4.000 12 C 0.298 3.702 13 O -0.400 6.400 14 O -0.266 6.266 15 C -0.004 4.004 16 C -0.147 4.147 17 C -0.013 4.013 18 C -0.560 4.560 19 H 0.077 0.923 20 C -0.144 4.144 21 N -0.534 5.534 22 Si 0.722 3.278 23 H -0.196 1.196 24 H -0.210 1.210 25 H -0.209 1.209 26 C -0.130 4.130 27 C -0.138 4.138 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.139 0.861 32 H 0.141 0.859 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.116 0.884 36 H 0.116 0.884 37 H 0.251 0.749 38 H 0.130 0.870 39 H 0.130 0.870 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.038 0.962 45 H 0.038 0.962 46 H 0.071 0.929 47 H 0.141 0.859 48 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -29.382 0.018 -20.839 36.022 hybrid contribution 0.780 0.001 0.891 1.185 sum -28.602 0.019 -19.948 34.871 Atomic orbital electron populations 1.20800 0.91280 1.02808 1.02313 1.19946 0.96089 0.93278 0.99836 1.21043 0.94208 0.97555 1.00960 1.21080 0.94136 0.97702 1.00037 1.19872 0.95420 0.93246 1.00276 1.20330 0.90099 1.04689 0.95111 1.21651 0.90870 1.05203 0.99544 1.20717 0.90320 0.75495 0.82994 1.90737 1.70679 1.49158 1.30895 1.45838 1.05801 1.76195 1.10253 1.20640 0.81587 1.06423 0.91351 1.23355 0.82119 0.72865 0.91896 1.90656 1.57186 1.45878 1.46311 1.86489 1.23506 1.82644 1.33998 1.23606 0.98249 1.02366 0.76181 1.21789 0.88745 1.02157 1.02051 1.19060 0.96517 0.97706 0.88058 1.21206 0.91387 1.50995 0.92434 0.92331 1.25023 0.98509 0.95123 0.95745 1.69968 1.35322 1.50576 0.97490 0.86492 0.85467 0.77627 0.78178 1.19626 1.20955 1.20950 1.21080 0.94135 0.97702 1.00038 1.21045 0.94207 0.97555 1.00959 0.91212 0.91546 0.91547 0.86118 0.85944 0.90018 0.90021 0.88403 0.88395 0.74914 0.86987 0.86995 0.91260 0.91265 0.91996 0.92002 0.96210 0.96208 0.92919 0.85944 0.86117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.50 10.01 36.01 0.36 -0.14 16 2 C -0.09 -0.59 5.88 -104.62 -0.62 -1.21 16 3 C -0.12 -0.78 9.70 -39.58 -0.38 -1.17 16 4 C -0.11 -0.76 9.70 -39.58 -0.38 -1.14 16 5 C -0.09 -0.62 5.13 -104.63 -0.54 -1.16 16 6 C -0.06 -0.45 4.63 -27.89 -0.13 -0.58 16 7 C -0.13 -0.85 5.68 -27.88 -0.16 -1.01 16 8 C 0.52 4.85 7.83 -10.98 -0.09 4.77 16 9 O -0.54 -6.84 15.98 5.56 0.09 -6.75 16 10 N -0.72 -6.66 5.53 -61.47 -0.34 -7.00 16 11 C 0.12 1.26 6.27 -5.19 -0.03 1.23 16 12 C 0.46 6.08 8.03 36.00 0.29 6.37 16 13 O -0.51 -7.87 15.42 -18.75 -0.29 -8.16 16 14 O -0.35 -5.39 10.22 -39.25 -0.40 -5.79 16 15 C 0.07 1.20 5.47 37.16 0.20 1.40 16 16 C -0.11 -2.20 5.53 -26.73 -0.15 -2.35 16 17 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 18 C -0.52 -14.52 9.11 -34.44 -0.31 -14.83 16 19 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 20 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 21 N -0.89 -26.53 13.29 55.43 0.74 -25.79 16 22 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 23 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 26 C -0.11 -0.76 9.70 -39.58 -0.38 -1.14 16 27 C -0.12 -0.78 9.70 -39.58 -0.38 -1.17 16 28 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.07 0.25 8.09 -51.93 -0.42 -0.17 16 30 H 0.07 0.25 8.09 -51.93 -0.42 -0.17 16 31 H 0.12 0.59 8.06 -52.49 -0.42 0.17 16 32 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 33 H 0.08 0.62 8.04 -51.93 -0.42 0.20 16 34 H 0.08 0.62 8.04 -51.93 -0.42 0.20 16 35 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.41 3.51 7.44 -40.82 -0.30 3.20 16 38 H 0.11 1.05 8.14 -51.93 -0.42 0.62 16 39 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.07 1.21 8.13 -51.93 -0.42 0.78 16 41 H 0.07 1.21 8.13 -51.93 -0.42 0.78 16 42 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 43 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 44 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 47 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 48 H 0.12 0.59 8.06 -52.49 -0.42 0.17 16 LS Contribution 411.63 15.07 6.20 6.20 Total: -1.00 -33.01 411.63 -9.82 -42.83 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -7.86 Total: -1.71 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: -2.94 Total: -10.15 kcal Atomic # 7 Polarization: -33.19 SS G_CDS: 0.40 Total: -32.79 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: -0.60 Total: -20.71 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -33.01 -9.82 -42.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749312445.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.378 kcal (2) G-P(sol) polarization free energy of solvation -33.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds