Wall clock time and date at job start Tue Mar 31 2020 17:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38234 * 120.00260 * 2 1 4 4 C 1.38234 * 120.00240 * 179.97438 * 3 2 1 5 5 C 1.38233 * 120.00037 * 0.26327 * 4 3 2 6 6 C 1.50693 * 120.00207 * 179.72405 * 5 4 3 7 7 C 1.52997 * 109.47229 * 89.99423 * 6 5 4 8 8 C 1.50707 * 109.47230 * 180.02562 * 7 6 5 9 9 O 1.21281 * 119.99923 * 359.97438 * 8 7 6 10 10 N 1.34778 * 119.99810 * 180.02562 * 8 7 6 11 11 C 1.46505 * 119.99637 * 180.02562 * 10 8 7 12 12 C 1.50695 * 109.46906 * 179.97438 * 11 10 8 13 13 O 1.20822 * 120.00207 * 359.97438 * 12 11 10 14 14 O 1.34228 * 119.99877 * 180.02562 * 12 11 10 15 15 C 1.45199 * 117.00046 * 179.97438 * 14 12 11 16 16 C 1.53007 * 109.47233 * 179.97438 * 15 14 12 17 17 C 1.52995 * 109.47079 * 179.97438 * 16 15 14 18 18 C 1.50699 * 109.47225 * 180.02562 * 17 16 15 19 19 H 1.08000 * 119.99454 * 0.02562 * 18 17 16 20 20 C 1.37878 * 120.00108 * 179.97438 * 18 17 16 21 21 N 1.31511 * 120.00321 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99854 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46852 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.46927 * 119.99908 * 22 20 18 25 25 H 1.48493 * 109.47417 * 240.00378 * 22 20 18 26 26 C 1.38238 * 119.99752 * 359.47832 * 5 4 3 27 27 C 1.38234 * 120.00033 * 0.49775 * 26 5 4 28 28 H 1.09000 * 109.46827 * 89.99810 * 1 2 3 29 29 H 1.08999 * 109.47240 * 210.00239 * 1 2 3 30 30 H 1.08999 * 109.46861 * 329.99859 * 1 2 3 31 31 H 1.07999 * 119.99751 * 359.97438 * 3 2 1 32 32 H 1.08002 * 119.99744 * 179.97438 * 4 3 2 33 33 H 1.09000 * 109.47097 * 209.99342 * 6 5 4 34 34 H 1.09001 * 109.47081 * 329.99847 * 6 5 4 35 35 H 1.09004 * 109.47454 * 300.00132 * 7 6 5 36 36 H 1.09006 * 109.47180 * 60.00059 * 7 6 5 37 37 H 0.97001 * 120.00324 * 359.97438 * 10 8 7 38 38 H 1.09000 * 109.47064 * 299.99522 * 11 10 8 39 39 H 1.08998 * 109.47074 * 59.99410 * 11 10 8 40 40 H 1.09004 * 109.47087 * 299.99470 * 15 14 12 41 41 H 1.09003 * 109.47093 * 59.99463 * 15 14 12 42 42 H 1.08997 * 109.46726 * 300.00111 * 16 15 14 43 43 H 1.08995 * 109.46482 * 59.99918 * 16 15 14 44 44 H 1.09004 * 109.47181 * 299.99945 * 17 16 15 45 45 H 1.09003 * 109.47153 * 60.00032 * 17 16 15 46 46 H 0.96995 * 120.00369 * 179.97438 * 21 20 18 47 47 H 1.07999 * 119.99934 * 180.25938 * 26 5 4 48 48 H 1.08001 * 120.00294 * 179.76453 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 0.0000 -0.0044 6 6 5.7787 0.0000 -0.0101 7 6 6.2941 -0.0027 1.4304 8 6 7.8012 -0.0021 1.4247 9 8 8.4036 -0.0002 0.3721 10 7 8.4795 -0.0047 2.5894 11 6 9.9445 -0.0036 2.5838 12 6 10.4522 -0.0064 4.0026 13 8 9.6706 -0.0086 4.9240 14 8 11.7728 -0.0053 4.2429 15 6 12.1898 -0.0076 5.6337 16 6 13.7180 -0.0067 5.7080 17 6 14.1574 -0.0084 7.1735 18 6 15.6626 -0.0068 7.2467 19 1 16.2473 -0.0044 6.3387 20 6 16.2932 -0.0074 8.4729 21 7 15.5811 -0.0099 9.5785 22 14 18.1590 -0.0063 8.5635 23 1 18.7213 -0.0041 7.1891 24 1 18.6186 1.2060 9.2878 25 1 18.6203 -1.2190 9.2856 26 6 3.5805 -1.1972 0.0010 27 6 2.1982 -1.1972 0.0009 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5139 31 1 1.6582 2.1324 -0.0004 32 1 4.1205 2.1325 0.0001 33 1 6.1400 -0.8891 -0.5270 34 1 6.1401 0.8909 -0.5236 35 1 5.9328 0.8863 1.9473 36 1 5.9327 -0.8937 1.9440 37 1 7.9977 -0.0066 3.4313 38 1 10.3066 -0.8919 2.0662 39 1 10.3052 0.8880 2.0709 40 1 11.8010 0.8811 6.1310 41 1 11.8028 -0.8989 6.1276 42 1 14.1064 -0.8955 5.2108 43 1 14.1051 0.8845 5.2140 44 1 13.7689 0.8807 7.6703 45 1 13.7701 -0.8993 7.6679 46 1 16.0247 -0.0107 10.4411 47 1 4.1205 -2.1325 0.0013 48 1 1.6582 -2.1325 0.0013 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000749312445.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:06 Heat of formation + Delta-G solvation = -149.609722 kcal Electronic energy + Delta-G solvation = -25909.200420 eV Core-core repulsion = 21927.110944 eV Total energy + Delta-G solvation = -3982.089476 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.80874 -40.82235 -40.13523 -38.06828 -35.95959 -35.77909 -35.43760 -33.71237 -32.31381 -31.77440 -30.15801 -28.78284 -27.57168 -25.27865 -24.38240 -23.58099 -22.23456 -22.14072 -21.69427 -21.26430 -19.05121 -18.68389 -18.10272 -17.99693 -17.45180 -16.95956 -16.68331 -16.49678 -16.33176 -16.27114 -15.82783 -15.74212 -14.93155 -14.65936 -14.60152 -14.43482 -14.24509 -14.01737 -13.92141 -13.69630 -13.63741 -13.47738 -13.33159 -12.99069 -12.85891 -12.51869 -12.43357 -12.38878 -12.12162 -12.11069 -11.94207 -11.87938 -11.68414 -11.47464 -11.43884 -11.23566 -11.07969 -10.58056 -10.33941 -9.79335 -9.35427 -8.22386 -6.33550 0.42528 0.53484 0.96388 1.26382 1.41468 1.42288 1.54665 1.55455 2.23692 2.41424 2.86499 3.12038 3.39755 3.64979 3.92195 3.99004 4.01091 4.02722 4.10781 4.16201 4.20275 4.22154 4.24552 4.38783 4.40405 4.51831 4.63112 4.68187 4.79521 4.81181 4.84004 4.84361 4.97549 4.99086 5.06996 5.09781 5.21117 5.25152 5.34285 5.35853 5.50023 5.55470 5.63833 5.74897 5.76164 5.80213 6.16831 6.18914 6.35359 6.50352 6.82678 7.09168 7.36304 8.89930 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.039257 B = 0.001252 C = 0.001231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.076228 B =22355.117694 C =22731.893822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.101 4.101 3 C -0.131 4.131 4 C -0.122 4.122 5 C -0.096 4.096 6 C -0.059 4.059 7 C -0.125 4.125 8 C 0.520 3.480 9 O -0.573 6.573 10 N -0.721 5.721 11 C 0.132 3.868 12 C 0.459 3.541 13 O -0.531 6.531 14 O -0.352 6.352 15 C 0.079 3.921 16 C -0.096 4.096 17 C 0.025 3.975 18 C -0.543 4.543 19 H 0.064 0.936 20 C 0.001 3.999 21 N -0.933 5.933 22 Si 0.966 3.034 23 H -0.260 1.260 24 H -0.279 1.279 25 H -0.279 1.279 26 C -0.122 4.122 27 C -0.131 4.131 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.134 0.866 32 H 0.132 0.868 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.418 0.582 38 H 0.125 0.875 39 H 0.125 0.875 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.067 0.933 44 H -0.002 1.002 45 H -0.002 1.002 46 H 0.264 0.736 47 H 0.132 0.868 48 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.054 0.018 -21.604 37.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.101 4.101 3 C -0.149 4.149 4 C -0.139 4.139 5 C -0.096 4.096 6 C -0.096 4.096 7 C -0.165 4.165 8 C 0.309 3.691 9 O -0.452 6.452 10 N -0.378 5.378 11 C 0.007 3.993 12 C 0.303 3.697 13 O -0.421 6.421 14 O -0.268 6.268 15 C 0.006 3.994 16 C -0.134 4.134 17 C -0.012 4.012 18 C -0.581 4.581 19 H 0.083 0.917 20 C -0.197 4.197 21 N -0.573 5.573 22 Si 0.791 3.209 23 H -0.184 1.184 24 H -0.204 1.204 25 H -0.204 1.204 26 C -0.139 4.139 27 C -0.149 4.149 28 H 0.094 0.906 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.152 0.848 32 H 0.150 0.850 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.132 0.868 36 H 0.132 0.868 37 H 0.257 0.743 38 H 0.142 0.858 39 H 0.142 0.858 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.016 0.984 45 H 0.016 0.984 46 H 0.073 0.927 47 H 0.150 0.850 48 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -29.791 0.018 -21.855 36.948 hybrid contribution 0.815 0.001 1.182 1.435 sum -28.977 0.019 -20.673 35.595 Atomic orbital electron populations 1.20833 0.89933 1.03471 1.02871 1.20261 0.97277 0.93263 0.99344 1.21297 0.94339 0.98325 1.00921 1.21277 0.94518 0.98089 1.00063 1.19898 0.95266 0.93549 1.00891 1.20235 0.90210 1.03876 0.95316 1.21661 0.88527 1.06722 0.99540 1.21175 0.91316 0.74344 0.82247 1.90727 1.71552 1.50892 1.32045 1.45862 1.05407 1.75914 1.10570 1.20687 0.82168 1.07567 0.88828 1.23920 0.81033 0.71732 0.92985 1.90655 1.57352 1.46790 1.47307 1.86464 1.24971 1.83065 1.32272 1.23204 0.96474 1.02242 0.77520 1.21475 0.90742 1.02656 0.98500 1.18941 0.95574 0.95566 0.91118 1.21664 0.92849 1.50758 0.92849 0.91745 1.25965 1.03778 0.94586 0.95352 1.70092 1.37533 1.51545 0.98152 0.85375 0.79140 0.77744 0.78657 1.18417 1.20431 1.20422 1.21277 0.94517 0.98089 1.00061 1.21299 0.94339 0.98323 1.00919 0.90632 0.90903 0.90904 0.84798 0.85043 0.90848 0.90851 0.86795 0.86784 0.74349 0.85766 0.85774 0.91454 0.91457 0.91433 0.91444 0.98366 0.98360 0.92689 0.85041 0.84796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.84 10.01 71.24 0.71 -0.13 16 2 C -0.10 -1.20 5.88 -19.86 -0.12 -1.32 16 3 C -0.13 -1.59 9.70 22.27 0.22 -1.37 16 4 C -0.12 -1.55 9.70 22.27 0.22 -1.33 16 5 C -0.10 -1.27 5.13 -19.87 -0.10 -1.37 16 6 C -0.06 -0.78 4.63 29.84 0.14 -0.64 16 7 C -0.13 -1.41 5.68 29.85 0.17 -1.24 16 8 C 0.52 9.05 7.83 87.66 0.69 9.74 16 9 O -0.57 -14.07 15.98 -3.03 -0.05 -14.12 16 10 N -0.72 -12.09 5.53 -466.78 -2.58 -14.67 16 11 C 0.13 2.44 6.27 85.63 0.54 2.98 16 12 C 0.46 11.65 8.03 71.23 0.57 12.22 16 13 O -0.53 -15.81 15.42 21.98 0.34 -15.47 16 14 O -0.35 -10.37 10.22 -51.40 -0.53 -10.90 16 15 C 0.08 2.72 5.47 71.98 0.39 3.11 16 16 C -0.10 -3.83 5.53 30.59 0.17 -3.66 16 17 C 0.03 1.29 4.97 29.85 0.15 1.44 16 18 C -0.54 -30.31 9.11 25.60 0.23 -30.07 16 19 H 0.06 3.43 7.74 -2.91 -0.02 3.41 16 20 C 0.00 0.06 5.46 84.66 0.46 0.53 16 21 N -0.93 -56.05 13.29 21.45 0.28 -55.77 16 22 Si 0.97 43.56 29.54 68.60 2.03 45.58 16 23 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 24 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 25 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 26 C -0.12 -1.55 9.70 22.27 0.22 -1.33 16 27 C -0.13 -1.58 9.70 22.27 0.22 -1.37 16 28 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.07 0.43 8.09 -2.39 -0.02 0.41 16 30 H 0.07 0.43 8.09 -2.39 -0.02 0.41 16 31 H 0.13 1.15 8.06 -2.91 -0.02 1.13 16 32 H 0.13 1.32 8.06 -2.91 -0.02 1.30 16 33 H 0.07 1.08 8.04 -2.39 -0.02 1.06 16 34 H 0.07 1.08 8.04 -2.39 -0.02 1.06 16 35 H 0.11 0.95 8.14 -2.38 -0.02 0.94 16 36 H 0.11 0.95 8.14 -2.38 -0.02 0.93 16 37 H 0.42 6.40 7.44 -92.71 -0.69 5.72 16 38 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.07 2.34 8.13 -2.38 -0.02 2.32 16 41 H 0.07 2.34 8.13 -2.39 -0.02 2.32 16 42 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 43 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 44 H 0.00 -0.11 8.14 -2.38 -0.02 -0.13 16 45 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 46 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 47 H 0.13 1.32 8.06 -2.91 -0.02 1.30 16 48 H 0.13 1.15 8.06 -2.91 -0.02 1.13 16 Total: -1.00 -70.32 411.63 4.62 -65.70 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: 0.25 Total: 13.45 kcal Atomic # 6 Polarization: -18.67 SS G_CDS: 4.87 Total: -13.81 kcal Atomic # 7 Polarization: -68.15 SS G_CDS: -2.30 Total: -70.44 kcal Atomic # 8 Polarization: -40.25 SS G_CDS: -0.23 Total: -40.49 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.58 kcal Total: -70.32 4.62 -65.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749312445.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.906 kcal (2) G-P(sol) polarization free energy of solvation -70.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds