Wall clock time and date at job start Tue Mar 31 2020 18:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 114.00307 * 2 1 4 4 H 1.08998 * 112.84623 * 338.31468 * 3 2 1 5 5 C 1.53776 * 113.61262 * 109.50431 * 3 2 1 6 6 C 1.53782 * 87.08125 * 89.11914 * 5 3 2 7 7 H 1.08998 * 113.61483 * 140.06326 * 6 5 3 8 8 N 1.46496 * 113.61667 * 270.88346 * 6 5 3 9 9 C 1.34774 * 120.00204 * 255.49583 * 8 6 5 10 10 O 1.21287 * 120.00008 * 359.97438 * 9 8 6 11 11 C 1.50704 * 120.00294 * 179.97438 * 9 8 6 12 12 C 1.50703 * 109.47057 * 179.97438 * 11 9 8 13 13 C 1.38294 * 119.92983 * 90.00128 * 12 11 9 14 14 C 1.38096 * 120.06969 * 179.97438 * 13 12 11 15 15 C 1.38887 * 119.92909 * 359.97438 * 14 13 12 16 16 O 1.35746 * 120.06604 * 180.02562 * 15 14 13 17 17 C 1.34833 * 117.00531 * 5.54199 * 16 15 14 18 18 H 1.07995 * 119.99432 * 354.93787 * 17 16 15 19 19 C 1.38650 * 120.00178 * 174.66237 * 17 16 15 20 20 N 1.31555 * 119.99962 * 0.27731 * 19 17 16 21 21 Si 1.86799 * 120.00030 * 180.27275 * 19 17 16 22 22 H 1.48501 * 109.47182 * 60.00237 * 21 19 17 23 23 H 1.48505 * 109.47357 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47524 * 300.00296 * 21 19 17 25 25 C 1.38871 * 119.86145 * 0.28182 * 15 14 13 26 26 C 1.38107 * 119.92971 * 359.46603 * 25 15 14 27 27 C 1.53779 * 113.61853 * 207.00365 * 3 2 1 28 28 C 1.52995 * 113.61456 * 156.33228 * 27 3 2 29 29 C 1.53000 * 113.61238 * 25.43514 * 27 3 2 30 30 H 1.08994 * 109.47225 * 59.99609 * 1 2 3 31 31 H 1.08997 * 109.46962 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.46899 * 299.99456 * 1 2 3 33 33 H 1.09003 * 113.61829 * 334.57612 * 5 3 2 34 34 H 1.08997 * 113.69112 * 203.67918 * 5 3 2 35 35 H 0.96994 * 120.00074 * 75.49095 * 8 6 5 36 36 H 1.08999 * 109.47003 * 59.99937 * 11 9 8 37 37 H 1.08993 * 109.46977 * 299.99956 * 11 9 8 38 38 H 1.08005 * 119.96959 * 359.97438 * 13 12 11 39 39 H 1.08002 * 120.04071 * 180.02562 * 14 13 12 40 40 H 0.97006 * 119.99546 * 179.97438 * 20 19 17 41 41 H 1.07995 * 120.03647 * 179.71990 * 25 15 14 42 42 H 1.07999 * 119.96577 * 180.27627 * 26 25 15 43 43 H 1.09006 * 109.46830 * 157.49703 * 28 27 3 44 44 H 1.08997 * 109.47567 * 277.50077 * 28 27 3 45 45 H 1.09008 * 109.46952 * 37.50695 * 28 27 3 46 46 H 1.08997 * 109.47241 * 322.49894 * 29 27 3 47 47 H 1.08994 * 109.47405 * 82.50294 * 29 27 3 48 48 H 1.09005 * 109.47376 * 202.50332 * 29 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3298 2.0717 -0.3712 5 6 2.6906 1.6768 1.3282 6 6 3.9724 1.0480 0.7567 7 1 4.8772 1.6063 0.9969 8 7 4.0975 -0.3849 1.0347 9 6 4.9540 -0.8153 1.9821 10 8 5.6215 -0.0164 2.6043 11 6 5.0823 -2.2893 2.2685 12 6 6.0983 -2.5022 3.3610 13 6 5.6963 -2.5153 4.6841 14 6 6.6248 -2.7107 5.6875 15 6 7.9635 -2.8947 5.3666 16 8 8.8785 -3.0875 6.3506 17 6 8.4087 -3.2043 7.6091 18 1 7.3569 -3.0620 7.8081 19 6 9.2752 -3.5126 8.6467 20 7 10.5565 -3.6859 8.4042 21 14 8.6231 -3.6819 10.3889 22 1 7.6086 -4.7655 10.4347 23 1 9.7428 -4.0125 11.3067 24 1 7.9995 -2.4020 10.8107 25 6 8.3648 -2.8757 4.0373 26 6 7.4306 -2.6850 3.0381 27 6 3.4077 1.3576 -0.6397 28 6 3.7911 2.7434 -1.1625 29 6 3.6558 0.2461 -1.6615 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 2.2886 1.1425 2.1891 34 1 2.7682 2.7511 1.4951 35 1 3.5639 -1.0239 0.5369 36 1 5.4056 -2.8080 1.3660 37 1 4.1172 -2.6828 2.5876 38 1 4.6551 -2.3726 4.9331 39 1 6.3103 -2.7213 6.7207 40 1 11.1627 -3.9013 9.1302 41 1 9.4057 -3.0139 3.7848 42 1 7.7414 -2.6746 2.0039 43 1 4.8766 2.8202 -1.2262 44 1 3.3577 2.8914 -2.1516 45 1 3.4123 3.5061 -0.4820 46 1 3.1858 -0.6752 -1.3174 47 1 3.2301 0.5343 -2.6225 48 1 4.7285 0.0872 -1.7723 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000753267002.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:04 Heat of formation + Delta-G solvation = -63.584333 kcal Electronic energy + Delta-G solvation = -28293.474674 eV Core-core repulsion = 24315.115538 eV Total energy + Delta-G solvation = -3978.359136 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.05218 -39.29499 -38.49681 -36.78159 -36.29432 -33.35511 -32.37557 -31.29408 -30.67365 -30.05341 -27.95851 -27.14269 -26.48911 -25.18452 -24.26710 -22.80362 -21.87719 -21.00877 -19.94776 -19.04197 -17.89280 -17.25229 -16.87923 -16.43010 -16.04643 -15.87825 -15.52011 -15.17572 -14.56836 -14.35300 -14.29150 -14.11077 -13.75472 -13.67766 -13.46357 -13.39457 -13.17050 -12.93927 -12.61372 -12.55706 -12.46560 -12.34107 -11.96224 -11.90030 -11.72177 -11.42241 -11.24436 -11.18096 -10.91962 -10.76896 -10.66784 -10.56686 -10.37393 -10.35513 -9.80313 -9.57511 -9.24684 -8.93128 -8.74649 -8.05299 -7.06909 -6.37611 -3.96054 2.34387 2.36336 2.88453 3.06140 3.17906 3.18979 3.21601 3.40962 4.03118 4.11946 4.17992 4.53870 4.61229 4.65236 4.81524 4.84310 4.97047 5.02396 5.09560 5.19539 5.25381 5.27798 5.31496 5.34058 5.36807 5.41672 5.43172 5.51019 5.60477 5.63349 5.70994 5.76505 5.82420 5.83768 5.94709 5.98575 6.04633 6.30834 6.51398 6.59110 6.79997 6.82558 7.01241 7.14067 7.33215 7.46950 7.53281 7.67649 7.93866 8.07920 8.48456 9.08102 9.79765 10.80617 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.022929 B = 0.002113 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.876234 B =13246.632178 C =13592.569496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.367 6.367 3 C 0.071 3.929 4 H 0.073 0.927 5 C -0.176 4.176 6 C 0.139 3.861 7 H 0.100 0.900 8 N -0.714 5.714 9 C 0.510 3.490 10 O -0.523 6.523 11 C -0.080 4.080 12 C -0.167 4.167 13 C -0.057 4.057 14 C -0.232 4.232 15 C 0.156 3.844 16 O -0.179 6.179 17 C -0.390 4.390 18 H 0.091 0.909 19 C 0.038 3.962 20 N -0.864 5.864 21 Si 0.940 3.060 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.270 1.270 25 C -0.192 4.192 26 C -0.060 4.060 27 C -0.093 4.093 28 C -0.126 4.126 29 C -0.132 4.132 30 H 0.041 0.959 31 H 0.087 0.913 32 H 0.041 0.959 33 H 0.078 0.922 34 H 0.096 0.904 35 H 0.403 0.597 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.103 0.897 39 H 0.126 0.874 40 H 0.269 0.731 41 H 0.116 0.884 42 H 0.108 0.892 43 H 0.067 0.933 44 H 0.062 0.938 45 H 0.061 0.939 46 H 0.067 0.933 47 H 0.054 0.946 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.358 8.583 -20.687 30.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.285 6.285 3 C 0.013 3.987 4 H 0.091 0.909 5 C -0.215 4.215 6 C 0.033 3.967 7 H 0.118 0.882 8 N -0.368 5.368 9 C 0.297 3.703 10 O -0.398 6.398 11 C -0.120 4.120 12 C -0.168 4.168 13 C -0.075 4.075 14 C -0.251 4.251 15 C 0.103 3.897 16 O -0.083 6.083 17 C -0.467 4.467 18 H 0.108 0.892 19 C -0.166 4.166 20 N -0.500 5.500 21 Si 0.765 3.235 22 H -0.195 1.195 23 H -0.203 1.203 24 H -0.195 1.195 25 C -0.211 4.211 26 C -0.078 4.078 27 C -0.094 4.094 28 C -0.184 4.184 29 C -0.190 4.190 30 H 0.059 0.941 31 H 0.105 0.895 32 H 0.060 0.940 33 H 0.097 0.903 34 H 0.114 0.886 35 H 0.239 0.761 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.121 0.879 39 H 0.144 0.856 40 H 0.079 0.921 41 H 0.134 0.866 42 H 0.126 0.874 43 H 0.086 0.914 44 H 0.081 0.919 45 H 0.080 0.920 46 H 0.086 0.914 47 H 0.073 0.927 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -19.273 8.898 -20.070 29.214 hybrid contribution -0.994 -0.057 0.716 1.226 sum -20.267 8.842 -19.354 29.385 Atomic orbital electron populations 1.22791 0.80744 1.02873 0.99952 1.87779 1.19740 1.26484 1.94506 1.23243 0.93993 0.85060 0.96441 0.90902 1.23942 0.97831 1.01563 0.98152 1.21739 0.98200 0.83004 0.93801 0.88247 1.45762 1.43882 1.06944 1.40213 1.21050 0.78638 0.91774 0.78799 1.90733 1.43970 1.56689 1.48375 1.20397 1.00242 0.91983 0.99333 1.18642 0.93494 1.11775 0.92924 1.20501 0.97919 0.97106 0.91982 1.21097 0.93212 1.11096 0.99744 1.19384 0.88787 0.92209 0.89369 1.83975 1.31581 1.77851 1.14857 1.21273 0.95168 1.49549 0.80683 0.89185 1.25274 0.95121 0.96489 0.99681 1.70036 1.02497 1.44302 1.33130 0.85793 0.78292 0.79095 0.80303 1.19548 1.20325 1.19548 1.20147 0.99591 1.11161 0.90190 1.20397 0.92046 0.97857 0.97505 1.22476 0.94530 0.97249 0.95160 1.21558 1.02307 0.93549 1.00946 1.21545 1.01718 0.98135 0.97570 0.94056 0.89460 0.93996 0.90313 0.88564 0.76055 0.89062 0.89085 0.87895 0.85650 0.92064 0.86588 0.87404 0.91360 0.91877 0.92015 0.91399 0.92654 0.92300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.86 101.05 1.10 1.28 16 2 O -0.37 -2.89 7.98 -35.23 -0.28 -3.17 16 3 C 0.07 0.52 3.77 -25.92 -0.10 0.43 16 4 H 0.07 0.44 7.85 -51.93 -0.41 0.03 16 5 C -0.18 -1.58 7.36 -25.92 -0.19 -1.77 16 6 C 0.14 1.44 3.74 -67.12 -0.25 1.19 16 7 H 0.10 1.23 7.49 -51.93 -0.39 0.84 16 8 N -0.71 -7.97 4.68 -53.02 -0.25 -8.22 16 9 C 0.51 7.54 7.82 -10.98 -0.09 7.45 16 10 O -0.52 -10.27 15.67 5.55 0.09 -10.18 16 11 C -0.08 -1.08 5.83 -29.03 -0.17 -1.25 16 12 C -0.17 -3.06 4.38 -104.58 -0.46 -3.52 16 13 C -0.06 -1.13 9.69 -39.61 -0.38 -1.51 16 14 C -0.23 -5.39 9.17 -39.39 -0.36 -5.75 16 15 C 0.16 4.00 6.65 -39.11 -0.26 3.74 16 16 O -0.18 -5.33 9.76 0.05 0.00 -5.33 16 17 C -0.39 -11.31 9.49 30.88 0.29 -11.02 16 18 H 0.09 2.42 5.20 -52.49 -0.27 2.15 16 19 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 20 N -0.86 -26.04 13.67 55.48 0.76 -25.28 16 21 Si 0.94 21.13 29.55 -169.99 -5.02 16.11 16 22 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 23 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 24 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 25 C -0.19 -4.34 9.99 -39.40 -0.39 -4.73 16 26 C -0.06 -1.15 9.69 -39.61 -0.38 -1.54 16 27 C -0.09 -0.70 1.34 -153.70 -0.21 -0.91 16 28 C -0.13 -0.76 9.07 37.15 0.34 -0.42 16 29 C -0.13 -0.96 8.42 37.16 0.31 -0.65 16 30 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.10 0.74 7.66 -51.93 -0.40 0.34 16 35 H 0.40 3.76 6.07 -40.82 -0.25 3.51 16 36 H 0.09 1.00 8.08 -51.93 -0.42 0.58 16 37 H 0.09 1.04 8.08 -51.93 -0.42 0.62 16 38 H 0.10 1.77 8.06 -52.48 -0.42 1.35 16 39 H 0.13 2.89 5.64 -52.49 -0.30 2.60 16 40 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 41 H 0.12 2.52 8.06 -52.49 -0.42 2.10 16 42 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 43 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.06 0.33 7.34 -51.92 -0.38 -0.05 16 46 H 0.07 0.51 5.63 -51.93 -0.29 0.22 16 47 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 392.08 15.07 5.91 5.91 Total: -1.00 -34.85 392.08 -7.40 -42.26 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -7.31 Total: 5.90 kcal Atomic # 6 Polarization: -16.70 SS G_CDS: -1.30 Total: -18.00 kcal Atomic # 7 Polarization: -34.01 SS G_CDS: 0.51 Total: -33.49 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: -0.19 Total: -18.68 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.85 -7.40 -42.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753267002.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.325 kcal (2) G-P(sol) polarization free energy of solvation -34.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds