Wall clock time and date at job start Tue Mar 31 2020 18:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 114.00307 * 2 1 4 4 H 1.08998 * 112.84623 * 338.31468 * 3 2 1 5 5 C 1.53776 * 113.61262 * 109.50431 * 3 2 1 6 6 C 1.53782 * 87.08125 * 89.11914 * 5 3 2 7 7 H 1.08998 * 113.61483 * 140.06326 * 6 5 3 8 8 N 1.46496 * 113.61667 * 270.88346 * 6 5 3 9 9 C 1.34774 * 120.00204 * 255.49583 * 8 6 5 10 10 O 1.21287 * 120.00008 * 359.97438 * 9 8 6 11 11 C 1.50704 * 120.00294 * 179.97438 * 9 8 6 12 12 C 1.50703 * 109.47057 * 179.97438 * 11 9 8 13 13 C 1.38294 * 119.92983 * 90.00128 * 12 11 9 14 14 C 1.38096 * 120.06969 * 179.97438 * 13 12 11 15 15 C 1.38887 * 119.92909 * 359.97438 * 14 13 12 16 16 O 1.35746 * 120.06604 * 180.02562 * 15 14 13 17 17 C 1.34833 * 117.00531 * 5.54199 * 16 15 14 18 18 H 1.07995 * 119.99432 * 354.93787 * 17 16 15 19 19 C 1.38650 * 120.00178 * 174.66237 * 17 16 15 20 20 N 1.31555 * 119.99962 * 0.27731 * 19 17 16 21 21 Si 1.86799 * 120.00030 * 180.27275 * 19 17 16 22 22 H 1.48501 * 109.47182 * 60.00237 * 21 19 17 23 23 H 1.48505 * 109.47357 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47524 * 300.00296 * 21 19 17 25 25 C 1.38871 * 119.86145 * 0.28182 * 15 14 13 26 26 C 1.38107 * 119.92971 * 359.46603 * 25 15 14 27 27 C 1.53779 * 113.61853 * 207.00365 * 3 2 1 28 28 C 1.52995 * 113.61456 * 156.33228 * 27 3 2 29 29 C 1.53000 * 113.61238 * 25.43514 * 27 3 2 30 30 H 1.08994 * 109.47225 * 59.99609 * 1 2 3 31 31 H 1.08997 * 109.46962 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.46899 * 299.99456 * 1 2 3 33 33 H 1.09003 * 113.61829 * 334.57612 * 5 3 2 34 34 H 1.08997 * 113.69112 * 203.67918 * 5 3 2 35 35 H 0.96994 * 120.00074 * 75.49095 * 8 6 5 36 36 H 1.08999 * 109.47003 * 59.99937 * 11 9 8 37 37 H 1.08993 * 109.46977 * 299.99956 * 11 9 8 38 38 H 1.08005 * 119.96959 * 359.97438 * 13 12 11 39 39 H 1.08002 * 120.04071 * 180.02562 * 14 13 12 40 40 H 0.97006 * 119.99546 * 179.97438 * 20 19 17 41 41 H 1.07995 * 120.03647 * 179.71990 * 25 15 14 42 42 H 1.07999 * 119.96577 * 180.27627 * 26 25 15 43 43 H 1.09006 * 109.46830 * 157.49703 * 28 27 3 44 44 H 1.08997 * 109.47567 * 277.50077 * 28 27 3 45 45 H 1.09008 * 109.46952 * 37.50695 * 28 27 3 46 46 H 1.08997 * 109.47241 * 322.49894 * 29 27 3 47 47 H 1.08994 * 109.47405 * 82.50294 * 29 27 3 48 48 H 1.09005 * 109.47376 * 202.50332 * 29 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3298 2.0717 -0.3712 5 6 2.6906 1.6768 1.3282 6 6 3.9724 1.0480 0.7567 7 1 4.8772 1.6063 0.9969 8 7 4.0975 -0.3849 1.0347 9 6 4.9540 -0.8153 1.9821 10 8 5.6215 -0.0164 2.6043 11 6 5.0823 -2.2893 2.2685 12 6 6.0983 -2.5022 3.3610 13 6 5.6963 -2.5153 4.6841 14 6 6.6248 -2.7107 5.6875 15 6 7.9635 -2.8947 5.3666 16 8 8.8785 -3.0875 6.3506 17 6 8.4087 -3.2043 7.6091 18 1 7.3569 -3.0620 7.8081 19 6 9.2752 -3.5126 8.6467 20 7 10.5565 -3.6859 8.4042 21 14 8.6231 -3.6819 10.3889 22 1 7.6086 -4.7655 10.4347 23 1 9.7428 -4.0125 11.3067 24 1 7.9995 -2.4020 10.8107 25 6 8.3648 -2.8757 4.0373 26 6 7.4306 -2.6850 3.0381 27 6 3.4077 1.3576 -0.6397 28 6 3.7911 2.7434 -1.1625 29 6 3.6558 0.2461 -1.6615 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 2.2886 1.1425 2.1891 34 1 2.7682 2.7511 1.4951 35 1 3.5639 -1.0239 0.5369 36 1 5.4056 -2.8080 1.3660 37 1 4.1172 -2.6828 2.5876 38 1 4.6551 -2.3726 4.9331 39 1 6.3103 -2.7213 6.7207 40 1 11.1627 -3.9013 9.1302 41 1 9.4057 -3.0139 3.7848 42 1 7.7414 -2.6746 2.0039 43 1 4.8766 2.8202 -1.2262 44 1 3.3577 2.8914 -2.1516 45 1 3.4123 3.5061 -0.4820 46 1 3.1858 -0.6752 -1.3174 47 1 3.2301 0.5343 -2.6225 48 1 4.7285 0.0872 -1.7723 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000753267002.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:03 Heat of formation + Delta-G solvation = -86.514974 kcal Electronic energy + Delta-G solvation = -28294.469021 eV Core-core repulsion = 24315.115538 eV Total energy + Delta-G solvation = -3979.353483 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.82199 -40.85004 -39.89910 -38.16841 -37.27099 -34.44176 -34.32999 -32.73903 -31.77729 -31.39646 -28.54693 -28.30867 -27.40145 -26.93564 -25.15825 -23.63371 -23.48132 -22.48938 -21.20073 -19.87326 -19.75495 -18.82681 -18.11021 -17.19325 -17.03074 -16.61922 -16.41539 -16.35055 -16.08693 -15.88744 -15.76432 -15.50088 -15.03326 -14.95319 -14.62390 -14.37285 -14.32251 -14.07634 -13.89813 -13.59710 -13.52956 -13.06902 -12.99601 -12.94861 -12.83552 -12.51077 -12.44998 -12.37187 -12.29050 -12.26291 -12.13145 -11.78533 -11.57254 -11.18074 -11.05031 -10.87532 -10.70910 -10.36442 -9.89762 -9.76031 -8.89581 -8.46860 -6.15193 0.61722 0.67843 1.33687 1.44973 1.50562 1.74962 2.18107 2.22488 2.70612 2.86681 3.18596 3.46176 3.52183 3.57098 3.84272 3.87670 4.04249 4.05645 4.17185 4.22165 4.27581 4.36851 4.48790 4.56933 4.59925 4.62964 4.65762 4.70894 4.74009 4.80702 4.81533 4.87967 4.93472 4.95567 5.02652 5.09500 5.12903 5.14768 5.16675 5.30822 5.40029 5.48077 5.56812 5.68207 5.71761 5.78750 6.03033 6.23180 6.30902 6.71347 6.97327 7.41580 7.78762 8.76400 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.022929 B = 0.002113 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.876234 B =13246.632178 C =13592.569496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.381 6.381 3 C 0.080 3.920 4 H 0.093 0.907 5 C -0.176 4.176 6 C 0.121 3.879 7 H 0.073 0.927 8 N -0.695 5.695 9 C 0.511 3.489 10 O -0.582 6.582 11 C -0.078 4.078 12 C -0.144 4.144 13 C -0.061 4.061 14 C -0.243 4.243 15 C 0.112 3.888 16 O -0.233 6.233 17 C -0.415 4.415 18 H 0.100 0.900 19 C -0.024 4.024 20 N -0.921 5.921 21 Si 1.020 2.980 22 H -0.255 1.255 23 H -0.270 1.270 24 H -0.259 1.259 25 C -0.206 4.206 26 C -0.058 4.058 27 C -0.082 4.082 28 C -0.126 4.126 29 C -0.131 4.131 30 H 0.054 0.946 31 H 0.096 0.904 32 H 0.041 0.959 33 H 0.060 0.940 34 H 0.107 0.893 35 H 0.415 0.585 36 H 0.129 0.871 37 H 0.124 0.876 38 H 0.136 0.864 39 H 0.118 0.882 40 H 0.273 0.727 41 H 0.113 0.887 42 H 0.146 0.854 43 H 0.061 0.939 44 H 0.079 0.921 45 H 0.067 0.933 46 H 0.066 0.934 47 H 0.068 0.932 48 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.166 8.859 -23.087 34.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.300 6.300 3 C 0.022 3.978 4 H 0.111 0.889 5 C -0.215 4.215 6 C 0.015 3.985 7 H 0.091 0.909 8 N -0.347 5.347 9 C 0.299 3.701 10 O -0.461 6.461 11 C -0.117 4.117 12 C -0.145 4.145 13 C -0.079 4.079 14 C -0.263 4.263 15 C 0.062 3.938 16 O -0.140 6.140 17 C -0.492 4.492 18 H 0.117 0.883 19 C -0.221 4.221 20 N -0.559 5.559 21 Si 0.839 3.161 22 H -0.180 1.180 23 H -0.194 1.194 24 H -0.184 1.184 25 C -0.225 4.225 26 C -0.075 4.075 27 C -0.083 4.083 28 C -0.184 4.184 29 C -0.188 4.188 30 H 0.073 0.927 31 H 0.115 0.885 32 H 0.060 0.940 33 H 0.079 0.921 34 H 0.125 0.875 35 H 0.254 0.746 36 H 0.147 0.853 37 H 0.142 0.858 38 H 0.154 0.846 39 H 0.135 0.865 40 H 0.082 0.918 41 H 0.131 0.869 42 H 0.164 0.836 43 H 0.080 0.920 44 H 0.098 0.902 45 H 0.086 0.914 46 H 0.085 0.915 47 H 0.087 0.913 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -23.162 9.173 -22.560 33.609 hybrid contribution -0.012 -0.060 1.111 1.113 sum -23.174 9.112 -21.449 32.866 Atomic orbital electron populations 1.22943 0.79516 1.03779 1.00582 1.87746 1.21107 1.26633 1.94473 1.23174 0.94195 0.85580 0.94854 0.88922 1.23965 0.97119 1.01956 0.98456 1.21937 0.97818 0.82182 0.96596 0.90904 1.45580 1.42570 1.07784 1.38815 1.21171 0.78402 0.91786 0.78724 1.90736 1.46522 1.58093 1.50743 1.20512 1.00382 0.91710 0.99108 1.19235 0.94272 1.07125 0.93857 1.20908 0.98897 0.96069 0.92012 1.21217 0.93014 1.11547 1.00483 1.19931 0.89711 0.94313 0.89865 1.83935 1.33510 1.80814 1.15731 1.21783 0.95958 1.50187 0.81224 0.88319 1.26624 0.95265 0.95692 1.04563 1.70187 1.04205 1.46718 1.34838 0.84637 0.78043 0.79753 0.73681 1.17968 1.19397 1.18376 1.20434 1.00520 1.11517 0.90033 1.20865 0.91989 0.96195 0.98499 1.22450 0.94155 0.98181 0.93560 1.21588 1.02063 0.92765 1.01958 1.21542 1.01320 0.97908 0.98079 0.92747 0.88520 0.94036 0.92086 0.87496 0.74582 0.85301 0.85779 0.84642 0.86456 0.91817 0.86916 0.83602 0.92037 0.90188 0.91414 0.91501 0.91292 0.93023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.86 113.37 1.23 1.45 16 2 O -0.38 -4.75 7.98 -148.98 -1.19 -5.94 16 3 C 0.08 0.95 3.77 31.12 0.12 1.06 16 4 H 0.09 0.77 7.85 -2.39 -0.02 0.75 16 5 C -0.18 -2.86 7.36 31.12 0.23 -2.63 16 6 C 0.12 2.32 3.74 45.52 0.17 2.49 16 7 H 0.07 1.81 7.49 -2.39 -0.02 1.79 16 8 N -0.69 -13.74 4.68 -440.04 -2.06 -15.80 16 9 C 0.51 13.82 7.82 87.66 0.69 14.50 16 10 O -0.58 -22.37 15.67 -3.05 -0.05 -22.42 16 11 C -0.08 -1.76 5.83 29.10 0.17 -1.59 16 12 C -0.14 -4.89 4.38 -19.84 -0.09 -4.98 16 13 C -0.06 -2.33 9.69 22.25 0.22 -2.11 16 14 C -0.24 -11.59 9.17 22.39 0.21 -11.39 16 15 C 0.11 6.03 6.65 22.58 0.15 6.18 16 16 O -0.23 -14.88 9.76 -22.72 -0.22 -15.10 16 17 C -0.42 -25.46 9.49 67.92 0.64 -24.82 16 18 H 0.10 5.58 5.20 -2.91 -0.02 5.57 16 19 C -0.02 -1.43 5.49 84.83 0.47 -0.97 16 20 N -0.92 -58.54 13.67 21.61 0.30 -58.24 16 21 Si 1.02 44.55 29.55 68.60 2.03 46.58 16 22 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 23 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 24 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 25 C -0.21 -9.59 9.99 22.39 0.22 -9.36 16 26 C -0.06 -2.13 9.69 22.25 0.22 -1.92 16 27 C -0.08 -1.04 1.34 -51.66 -0.07 -1.10 16 28 C -0.13 -1.22 9.07 71.98 0.65 -0.57 16 29 C -0.13 -1.51 8.42 71.98 0.61 -0.91 16 30 H 0.05 0.29 8.14 -2.39 -0.02 0.27 16 31 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.04 0.33 8.14 -2.39 -0.02 0.31 16 33 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.11 1.47 7.66 -2.39 -0.02 1.45 16 35 H 0.42 6.27 6.07 -92.71 -0.56 5.71 16 36 H 0.13 2.07 8.08 -2.39 -0.02 2.05 16 37 H 0.12 2.12 8.08 -2.39 -0.02 2.10 16 38 H 0.14 4.26 8.06 -2.91 -0.02 4.24 16 39 H 0.12 5.64 5.64 -2.91 -0.02 5.62 16 40 H 0.27 15.85 8.31 -92.70 -0.77 15.08 16 41 H 0.11 5.16 8.06 -2.91 -0.02 5.14 16 42 H 0.15 4.26 8.06 -2.91 -0.02 4.24 16 43 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 44 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 45 H 0.07 0.57 7.34 -2.38 -0.02 0.56 16 46 H 0.07 0.78 5.63 -2.39 -0.01 0.77 16 47 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 48 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 Total: -1.00 -83.01 392.08 5.04 -77.97 By element: Atomic # 1 Polarization: 29.20 SS G_CDS: 0.41 Total: 29.60 kcal Atomic # 6 Polarization: -42.48 SS G_CDS: 5.83 Total: -36.65 kcal Atomic # 7 Polarization: -72.28 SS G_CDS: -1.76 Total: -74.04 kcal Atomic # 8 Polarization: -41.99 SS G_CDS: -1.46 Total: -43.45 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -83.01 5.04 -77.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753267002.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.546 kcal (2) G-P(sol) polarization free energy of solvation -83.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds