Wall clock time and date at job start Tue Mar 31 2020 19:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47467 * 2 1 4 4 C 1.52997 * 109.47056 * 240.00044 * 2 1 3 5 5 C 1.52997 * 109.47298 * 59.99877 * 4 2 1 6 6 C 1.50698 * 109.47569 * 179.97438 * 5 4 2 7 7 O 1.20827 * 119.99651 * 0.02562 * 6 5 4 8 8 O 1.34229 * 120.00512 * 179.97438 * 6 5 4 9 9 C 1.45199 * 117.00286 * 180.02562 * 8 6 5 10 10 C 1.50700 * 109.46887 * 180.02562 * 9 8 6 11 11 O 1.21275 * 120.00352 * 359.97438 * 10 9 8 12 12 N 1.34773 * 119.99510 * 180.02562 * 10 9 8 13 13 C 1.46501 * 119.99759 * 180.02562 * 12 10 9 14 14 C 1.50704 * 109.47173 * 179.97438 * 13 12 10 15 15 H 1.07997 * 119.99756 * 359.97438 * 14 13 12 16 16 C 1.37880 * 120.00134 * 179.97438 * 14 13 12 17 17 N 1.31511 * 119.99816 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00046 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47036 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46845 * 120.00119 * 18 16 14 21 21 H 1.48498 * 109.47158 * 240.00204 * 18 16 14 22 22 C 1.50706 * 109.47428 * 120.00093 * 2 1 3 23 23 C 1.38237 * 119.99761 * 300.00365 * 22 2 1 24 24 C 1.38235 * 119.99712 * 179.97438 * 23 22 2 25 25 C 1.38234 * 120.00220 * 359.94731 * 24 23 22 26 26 C 1.38233 * 120.00037 * 0.28719 * 25 24 23 27 27 C 1.38234 * 120.00191 * 119.97467 * 22 2 1 28 28 H 1.09007 * 109.46732 * 299.99668 * 1 2 3 29 29 H 1.08992 * 109.46964 * 59.99919 * 1 2 3 30 30 H 1.08999 * 109.47201 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47368 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.46902 * 300.00766 * 3 2 1 33 33 H 1.09004 * 109.47125 * 59.99963 * 3 2 1 34 34 H 1.09006 * 109.47161 * 180.02562 * 4 2 1 35 35 H 1.08999 * 109.47108 * 300.00048 * 4 2 1 36 36 H 1.08998 * 109.47349 * 300.00486 * 5 4 2 37 37 H 1.09007 * 109.46746 * 60.00319 * 5 4 2 38 38 H 1.09002 * 109.47181 * 300.00346 * 9 8 6 39 39 H 1.09002 * 109.46706 * 60.00080 * 9 8 6 40 40 H 0.97004 * 120.00499 * 359.97438 * 12 10 9 41 41 H 1.08998 * 109.47035 * 299.99123 * 13 12 10 42 42 H 1.08990 * 109.47380 * 59.99545 * 13 12 10 43 43 H 0.96999 * 120.00325 * 179.97438 * 17 16 14 44 44 H 1.08005 * 120.00088 * 359.96779 * 23 22 2 45 45 H 1.07999 * 119.99770 * 179.97438 * 24 23 22 46 46 H 1.08002 * 119.99744 * 180.02562 * 25 24 23 47 47 H 1.07998 * 120.00395 * 179.72811 * 26 25 24 48 48 H 1.07999 * 119.99990 * 0.02562 * 27 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5300 0.0000 -2.4985 6 6 2.0328 -0.7100 -3.7289 7 8 2.7274 -1.6924 -3.6181 8 8 1.7081 -0.2517 -4.9481 9 6 2.2273 -0.9858 -6.0882 10 6 1.7629 -0.3289 -7.3624 11 8 1.0629 0.6603 -7.3145 12 7 2.1247 -0.8413 -8.5553 13 6 1.6737 -0.2023 -9.7941 14 6 2.2125 -0.9644 -10.9774 15 1 2.8295 -1.8370 -10.8221 16 6 1.9177 -0.5474 -12.2581 17 7 1.1668 0.5156 -12.4471 18 14 2.5862 -1.4916 -13.7248 19 1 3.3976 -2.6395 -13.2464 20 1 1.4560 -1.9934 -14.5472 21 1 3.4356 -0.5927 -14.5468 22 6 2.0324 -0.7104 1.2305 23 6 1.6984 -0.2382 2.4860 24 6 2.1588 -0.8902 3.6147 25 6 2.9523 -2.0150 3.4878 26 6 3.2903 -2.4844 2.2323 27 6 2.8267 -1.8346 1.1036 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6768 1.9564 0.8900 34 1 3.1300 -0.7216 -1.2490 35 1 1.6766 -1.7489 -1.2492 36 1 0.4400 0.0001 -2.4984 37 1 1.8934 1.0277 -2.4984 38 1 3.3169 -0.9848 -6.0554 39 1 1.8638 -2.0129 -6.0550 40 1 2.6843 -1.6327 -8.5937 41 1 0.5842 -0.2023 -9.8271 42 1 2.0382 0.8243 -9.8270 43 1 0.9597 0.8091 -13.3481 44 1 1.0778 0.6402 2.5851 45 1 1.8982 -0.5210 4.5956 46 1 3.3117 -2.5245 4.3697 47 1 3.9138 -3.3606 2.1332 48 1 3.0876 -2.2036 0.1227 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000754291607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:08 Heat of formation + Delta-G solvation = -118.967719 kcal Electronic energy + Delta-G solvation = -27160.050180 eV Core-core repulsion = 23179.289440 eV Total energy + Delta-G solvation = -3980.760740 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.79641 -40.10666 -38.74490 -37.26523 -36.26721 -34.26051 -32.43208 -32.12544 -31.25052 -29.83951 -29.09532 -27.65647 -26.84536 -25.61630 -23.17234 -22.68139 -22.32255 -20.83462 -19.94848 -19.15847 -18.06654 -17.45581 -17.20653 -16.87253 -16.20659 -15.56737 -15.40983 -15.31938 -15.16317 -15.01692 -14.49396 -14.39941 -14.03526 -13.90839 -13.83835 -13.65571 -12.96247 -12.94509 -12.69465 -12.65724 -12.46026 -12.17846 -12.02038 -11.84755 -11.77744 -11.71457 -11.56386 -11.08122 -11.00249 -10.95363 -10.90033 -10.78651 -10.69287 -10.56997 -10.35856 -9.43645 -9.22093 -9.18964 -9.00870 -8.80052 -8.00287 -6.21024 -4.28415 1.04948 1.09589 2.12122 2.43201 3.16640 3.21511 3.28779 3.31799 3.47190 3.93949 4.12847 4.28743 4.35054 4.54637 4.62793 4.68561 4.72728 4.82694 4.89644 4.90706 4.93553 5.11656 5.15270 5.18686 5.21524 5.23170 5.30761 5.30808 5.33710 5.48690 5.51474 5.58948 5.60152 5.72844 5.74519 5.79554 5.90458 5.97652 6.18637 6.22233 6.32363 6.37763 6.69706 7.21261 7.29528 7.44348 7.58156 7.68565 7.90520 8.48680 8.69947 8.95145 9.38135 10.89165 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.035347 B = 0.001580 C = 0.001529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.945613 B =17722.237033 C =18307.211382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.025 4.025 3 C -0.145 4.145 4 C -0.100 4.100 5 C -0.118 4.118 6 C 0.460 3.540 7 O -0.513 6.513 8 O -0.330 6.330 9 C 0.048 3.952 10 C 0.499 3.501 11 O -0.535 6.535 12 N -0.707 5.707 13 C 0.250 3.750 14 C -0.545 4.545 15 H 0.065 0.935 16 C 0.064 3.936 17 N -0.884 5.884 18 Si 0.905 3.095 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.282 1.282 22 C -0.066 4.066 23 C -0.116 4.116 24 C -0.121 4.121 25 C -0.128 4.128 26 C -0.118 4.118 27 C -0.121 4.121 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.393 0.607 41 H 0.030 0.970 42 H 0.030 0.970 43 H 0.266 0.734 44 H 0.120 0.880 45 H 0.119 0.881 46 H 0.118 0.882 47 H 0.120 0.880 48 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.147 -3.034 31.884 32.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.025 4.025 3 C -0.202 4.202 4 C -0.137 4.137 5 C -0.155 4.155 6 C 0.303 3.697 7 O -0.402 6.402 8 O -0.245 6.245 9 C -0.029 4.029 10 C 0.282 3.718 11 O -0.412 6.412 12 N -0.357 5.357 13 C 0.130 3.870 14 C -0.583 4.583 15 H 0.083 0.917 16 C -0.140 4.140 17 N -0.522 5.522 18 Si 0.732 3.268 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.208 1.208 22 C -0.066 4.066 23 C -0.134 4.134 24 C -0.139 4.139 25 C -0.146 4.146 26 C -0.136 4.136 27 C -0.139 4.139 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.129 0.871 37 H 0.128 0.872 38 H 0.114 0.886 39 H 0.114 0.886 40 H 0.226 0.774 41 H 0.048 0.952 42 H 0.048 0.952 43 H 0.076 0.924 44 H 0.138 0.862 45 H 0.137 0.863 46 H 0.136 0.864 47 H 0.139 0.861 48 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 1.755 -2.479 31.731 31.876 hybrid contribution 0.730 -1.029 -0.919 1.561 sum 2.485 -3.509 30.812 31.111 Atomic orbital electron populations 1.21997 0.93341 1.02454 1.02401 1.19510 0.95977 0.95272 0.91731 1.21997 1.01531 0.94262 1.02402 1.21592 1.01799 0.99501 0.90833 1.21568 1.03870 1.01244 0.88822 1.23856 0.77645 0.83022 0.85179 1.90659 1.35987 1.26126 1.87434 1.86570 1.68980 1.54700 1.14239 1.22854 1.00323 0.96138 0.83598 1.19904 0.82022 0.85290 0.84571 1.90705 1.37618 1.25715 1.87168 1.46370 1.51857 1.31224 1.06232 1.19183 0.95897 0.93734 0.78162 1.21252 1.33319 1.13224 0.90554 0.91705 1.24953 0.94835 0.95081 0.99110 1.69981 1.36243 1.23642 1.22308 0.86335 0.78739 0.79686 0.82000 1.19607 1.20762 1.20757 1.19779 0.97289 0.95454 0.94123 1.20977 1.00356 1.00085 0.91938 1.21123 0.98262 0.96033 0.98447 1.21150 0.98948 0.97008 0.97456 1.21187 0.99880 0.99934 0.92618 1.21302 0.97773 0.95530 0.99248 0.92240 0.91571 0.92229 0.92228 0.91565 0.92247 0.90422 0.90426 0.87149 0.87158 0.88579 0.88570 0.77429 0.95235 0.95244 0.92421 0.86166 0.86271 0.86352 0.86150 0.85284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 7.93 37.16 0.29 -0.59 16 2 C -0.02 -0.17 0.63 -155.66 -0.10 -0.27 16 3 C -0.14 -0.89 7.93 37.16 0.29 -0.59 16 4 C -0.10 -0.79 2.22 -26.73 -0.06 -0.85 16 5 C -0.12 -1.01 5.11 -27.89 -0.14 -1.16 16 6 C 0.46 5.85 7.96 36.00 0.29 6.14 16 7 O -0.51 -7.43 15.73 -18.75 -0.29 -7.73 16 8 O -0.33 -5.08 9.75 -45.90 -0.45 -5.53 16 9 C 0.05 0.73 5.94 36.01 0.21 0.95 16 10 C 0.50 9.97 7.91 -10.99 -0.09 9.89 16 11 O -0.53 -13.03 16.50 -14.10 -0.23 -13.26 16 12 N -0.71 -14.57 5.55 -61.48 -0.34 -14.91 16 13 C 0.25 6.53 5.43 -5.19 -0.03 6.51 16 14 C -0.55 -14.58 9.28 -34.44 -0.32 -14.90 16 15 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 16 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 17 N -0.88 -25.75 13.29 55.43 0.74 -25.02 16 18 Si 0.91 20.62 29.54 -169.99 -5.02 15.59 16 19 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 C -0.07 -0.51 4.76 -104.62 -0.50 -1.01 16 23 C -0.12 -0.83 8.71 -39.58 -0.34 -1.17 16 24 C -0.12 -0.83 10.05 -39.58 -0.40 -1.23 16 25 C -0.13 -0.90 10.05 -39.58 -0.40 -1.30 16 26 C -0.12 -0.90 10.05 -39.58 -0.40 -1.30 16 27 C -0.12 -0.99 8.98 -39.58 -0.36 -1.34 16 28 H 0.06 0.33 7.39 -51.92 -0.38 -0.06 16 29 H 0.07 0.37 6.43 -51.93 -0.33 0.04 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.37 6.43 -51.93 -0.33 0.04 16 33 H 0.06 0.33 7.39 -51.93 -0.38 -0.06 16 34 H 0.08 0.67 7.47 -51.93 -0.39 0.28 16 35 H 0.08 0.67 7.47 -51.93 -0.39 0.28 16 36 H 0.11 0.81 6.43 -51.93 -0.33 0.48 16 37 H 0.11 0.81 6.43 -51.92 -0.33 0.48 16 38 H 0.10 1.27 8.13 -51.93 -0.42 0.85 16 39 H 0.10 1.27 8.13 -51.93 -0.42 0.85 16 40 H 0.39 6.81 8.32 -40.82 -0.34 6.47 16 41 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 44 H 0.12 0.69 7.10 -52.48 -0.37 0.31 16 45 H 0.12 0.59 8.06 -52.49 -0.42 0.17 16 46 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 47 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 48 H 0.13 1.03 5.90 -52.49 -0.31 0.72 16 LS Contribution 395.73 15.07 5.96 5.96 Total: -1.00 -33.75 395.73 -9.01 -42.76 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -7.24 Total: 2.70 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: -2.13 Total: -0.57 kcal Atomic # 7 Polarization: -40.32 SS G_CDS: 0.40 Total: -39.93 kcal Atomic # 8 Polarization: -25.54 SS G_CDS: -0.98 Total: -26.52 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.75 -9.01 -42.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754291607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.213 kcal (2) G-P(sol) polarization free energy of solvation -33.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds