Wall clock time and date at job start Tue Mar 31 2020 19:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47467 * 2 1 4 4 C 1.52997 * 109.47056 * 240.00044 * 2 1 3 5 5 C 1.52997 * 109.47298 * 59.99877 * 4 2 1 6 6 C 1.50698 * 109.47569 * 179.97438 * 5 4 2 7 7 O 1.20827 * 119.99651 * 0.02562 * 6 5 4 8 8 O 1.34229 * 120.00512 * 179.97438 * 6 5 4 9 9 C 1.45199 * 117.00286 * 180.02562 * 8 6 5 10 10 C 1.50700 * 109.46887 * 180.02562 * 9 8 6 11 11 O 1.21275 * 120.00352 * 359.97438 * 10 9 8 12 12 N 1.34773 * 119.99510 * 180.02562 * 10 9 8 13 13 C 1.46501 * 119.99759 * 180.02562 * 12 10 9 14 14 C 1.50704 * 109.47173 * 179.97438 * 13 12 10 15 15 H 1.07997 * 119.99756 * 359.97438 * 14 13 12 16 16 C 1.37880 * 120.00134 * 179.97438 * 14 13 12 17 17 N 1.31511 * 119.99816 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00046 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47036 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46845 * 120.00119 * 18 16 14 21 21 H 1.48498 * 109.47158 * 240.00204 * 18 16 14 22 22 C 1.50706 * 109.47428 * 120.00093 * 2 1 3 23 23 C 1.38237 * 119.99761 * 300.00365 * 22 2 1 24 24 C 1.38235 * 119.99712 * 179.97438 * 23 22 2 25 25 C 1.38234 * 120.00220 * 359.94731 * 24 23 22 26 26 C 1.38233 * 120.00037 * 0.28719 * 25 24 23 27 27 C 1.38234 * 120.00191 * 119.97467 * 22 2 1 28 28 H 1.09007 * 109.46732 * 299.99668 * 1 2 3 29 29 H 1.08992 * 109.46964 * 59.99919 * 1 2 3 30 30 H 1.08999 * 109.47201 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47368 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.46902 * 300.00766 * 3 2 1 33 33 H 1.09004 * 109.47125 * 59.99963 * 3 2 1 34 34 H 1.09006 * 109.47161 * 180.02562 * 4 2 1 35 35 H 1.08999 * 109.47108 * 300.00048 * 4 2 1 36 36 H 1.08998 * 109.47349 * 300.00486 * 5 4 2 37 37 H 1.09007 * 109.46746 * 60.00319 * 5 4 2 38 38 H 1.09002 * 109.47181 * 300.00346 * 9 8 6 39 39 H 1.09002 * 109.46706 * 60.00080 * 9 8 6 40 40 H 0.97004 * 120.00499 * 359.97438 * 12 10 9 41 41 H 1.08998 * 109.47035 * 299.99123 * 13 12 10 42 42 H 1.08990 * 109.47380 * 59.99545 * 13 12 10 43 43 H 0.96999 * 120.00325 * 179.97438 * 17 16 14 44 44 H 1.08005 * 120.00088 * 359.96779 * 23 22 2 45 45 H 1.07999 * 119.99770 * 179.97438 * 24 23 22 46 46 H 1.08002 * 119.99744 * 180.02562 * 25 24 23 47 47 H 1.07998 * 120.00395 * 179.72811 * 26 25 24 48 48 H 1.07999 * 119.99990 * 0.02562 * 27 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5300 0.0000 -2.4985 6 6 2.0328 -0.7100 -3.7289 7 8 2.7274 -1.6924 -3.6181 8 8 1.7081 -0.2517 -4.9481 9 6 2.2273 -0.9858 -6.0882 10 6 1.7629 -0.3289 -7.3624 11 8 1.0629 0.6603 -7.3145 12 7 2.1247 -0.8413 -8.5553 13 6 1.6737 -0.2023 -9.7941 14 6 2.2125 -0.9644 -10.9774 15 1 2.8295 -1.8370 -10.8221 16 6 1.9177 -0.5474 -12.2581 17 7 1.1668 0.5156 -12.4471 18 14 2.5862 -1.4916 -13.7248 19 1 3.3976 -2.6395 -13.2464 20 1 1.4560 -1.9934 -14.5472 21 1 3.4356 -0.5927 -14.5468 22 6 2.0324 -0.7104 1.2305 23 6 1.6984 -0.2382 2.4860 24 6 2.1588 -0.8902 3.6147 25 6 2.9523 -2.0150 3.4878 26 6 3.2903 -2.4844 2.2323 27 6 2.8267 -1.8346 1.1036 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6768 1.9564 0.8900 34 1 3.1300 -0.7216 -1.2490 35 1 1.6766 -1.7489 -1.2492 36 1 0.4400 0.0001 -2.4984 37 1 1.8934 1.0277 -2.4984 38 1 3.3169 -0.9848 -6.0554 39 1 1.8638 -2.0129 -6.0550 40 1 2.6843 -1.6327 -8.5937 41 1 0.5842 -0.2023 -9.8271 42 1 2.0382 0.8243 -9.8270 43 1 0.9597 0.8091 -13.3481 44 1 1.0778 0.6402 2.5851 45 1 1.8982 -0.5210 4.5956 46 1 3.3117 -2.5245 4.3697 47 1 3.9138 -3.3606 2.1332 48 1 3.0876 -2.2036 0.1227 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000754291607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:07 Heat of formation + Delta-G solvation = -137.852025 kcal Electronic energy + Delta-G solvation = -27160.869065 eV Core-core repulsion = 23179.289440 eV Total energy + Delta-G solvation = -3981.579625 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.80981 -40.81094 -40.31665 -37.99935 -37.29371 -36.18722 -34.42334 -32.82352 -31.80350 -30.85834 -30.17735 -28.54761 -28.12655 -26.43099 -24.64630 -23.65809 -23.03984 -21.75948 -21.63753 -19.74620 -19.27554 -18.86504 -18.06360 -17.96851 -17.63690 -17.05592 -16.79331 -16.46115 -16.00875 -15.92592 -15.64238 -15.54693 -14.86559 -14.68770 -14.60554 -14.42390 -14.21519 -14.16753 -14.03697 -13.60700 -13.60041 -13.23242 -13.22721 -12.91767 -12.76078 -12.66837 -12.44759 -12.23258 -12.22989 -12.11197 -11.90411 -11.66272 -11.65411 -11.47412 -11.42667 -11.29313 -10.91078 -10.83560 -9.93754 -9.76568 -9.54170 -8.30253 -6.46799 0.51392 0.55057 1.11999 1.29881 1.44777 1.44871 1.54826 1.58647 2.34032 2.58413 2.93372 3.05200 3.53625 3.58403 3.71812 3.88113 3.94669 4.04966 4.05710 4.17136 4.20695 4.30811 4.32702 4.36068 4.37735 4.54749 4.67960 4.74968 4.86131 4.95451 4.97825 5.05847 5.06893 5.07890 5.17786 5.21357 5.21876 5.26978 5.29349 5.41017 5.42659 5.48256 5.62560 5.66641 5.68727 5.79021 5.81604 6.18012 6.60203 6.63285 6.78434 7.19916 7.35010 8.82074 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.035347 B = 0.001580 C = 0.001529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.945613 B =17722.237033 C =18307.211382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.019 4.019 3 C -0.145 4.145 4 C -0.093 4.093 5 C -0.113 4.113 6 C 0.461 3.539 7 O -0.532 6.532 8 O -0.350 6.350 9 C 0.060 3.940 10 C 0.499 3.501 11 O -0.584 6.584 12 N -0.699 5.699 13 C 0.265 3.735 14 C -0.557 4.557 15 H 0.086 0.914 16 C 0.005 3.995 17 N -0.930 5.930 18 Si 0.985 3.015 19 H -0.254 1.254 20 H -0.279 1.279 21 H -0.279 1.279 22 C -0.075 4.075 23 C -0.123 4.123 24 C -0.127 4.127 25 C -0.136 4.136 26 C -0.131 4.131 27 C -0.139 4.139 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.127 0.873 37 H 0.127 0.873 38 H 0.122 0.878 39 H 0.122 0.878 40 H 0.412 0.588 41 H -0.007 1.007 42 H -0.007 1.007 43 H 0.269 0.731 44 H 0.135 0.865 45 H 0.138 0.862 46 H 0.135 0.865 47 H 0.130 0.870 48 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.931 -4.142 33.009 33.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.019 4.019 3 C -0.202 4.202 4 C -0.130 4.130 5 C -0.149 4.149 6 C 0.306 3.694 7 O -0.421 6.421 8 O -0.266 6.266 9 C -0.017 4.017 10 C 0.285 3.715 11 O -0.464 6.464 12 N -0.351 5.351 13 C 0.143 3.857 14 C -0.595 4.595 15 H 0.104 0.896 16 C -0.195 4.195 17 N -0.568 5.568 18 Si 0.808 3.192 19 H -0.177 1.177 20 H -0.205 1.205 21 H -0.205 1.205 22 C -0.075 4.075 23 C -0.141 4.141 24 C -0.145 4.145 25 C -0.154 4.154 26 C -0.149 4.149 27 C -0.157 4.157 28 H 0.086 0.914 29 H 0.092 0.908 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.145 0.855 37 H 0.145 0.855 38 H 0.140 0.860 39 H 0.140 0.860 40 H 0.248 0.752 41 H 0.011 0.989 42 H 0.011 0.989 43 H 0.078 0.922 44 H 0.153 0.847 45 H 0.156 0.844 46 H 0.153 0.847 47 H 0.148 0.852 48 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.569 -3.629 32.897 33.196 hybrid contribution 0.471 -0.665 -1.165 1.422 sum 3.040 -4.294 31.732 32.165 Atomic orbital electron populations 1.22007 0.92696 1.02269 1.03218 1.19457 0.96373 0.95358 0.90666 1.22008 1.01125 0.93838 1.03220 1.21520 1.01189 0.99154 0.91165 1.21730 1.04800 1.01578 0.86840 1.24588 0.77023 0.82843 0.84981 1.90651 1.36958 1.27099 1.87430 1.86578 1.69566 1.55370 1.15062 1.22703 1.01573 0.96234 0.81211 1.20716 0.80590 0.84428 0.85772 1.90680 1.39718 1.28011 1.87992 1.46053 1.52143 1.31696 1.05162 1.18640 0.93612 0.92577 0.80859 1.21648 1.33366 1.13730 0.90766 0.89627 1.26041 0.94866 0.95920 1.02632 1.70133 1.37786 1.25620 1.23266 0.85103 0.78066 0.78474 0.77519 1.17693 1.20496 1.20489 1.19920 0.97315 0.95430 0.94795 1.21203 1.00511 1.00609 0.91771 1.21434 0.97832 0.95856 0.99358 1.21426 0.98916 0.97266 0.97829 1.21408 1.00198 1.00421 0.92876 1.21401 0.98666 0.96277 0.99334 0.91376 0.90829 0.92915 0.92914 0.90822 0.91383 0.91345 0.91349 0.85495 0.85503 0.86040 0.86030 0.75165 0.98908 0.98914 0.92195 0.84722 0.84369 0.84673 0.85233 0.85798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 7.93 71.98 0.57 -0.96 16 2 C -0.02 -0.23 0.63 -52.93 -0.03 -0.26 16 3 C -0.14 -1.53 7.93 71.98 0.57 -0.96 16 4 C -0.09 -1.39 2.22 30.59 0.07 -1.33 16 5 C -0.11 -1.77 5.11 29.85 0.15 -1.61 16 6 C 0.46 11.12 7.96 71.24 0.57 11.69 16 7 O -0.53 -14.71 15.73 21.96 0.35 -14.37 16 8 O -0.35 -10.38 9.75 -45.05 -0.44 -10.82 16 9 C 0.06 1.71 5.94 71.24 0.42 2.14 16 10 C 0.50 19.97 7.91 87.66 0.69 20.66 16 11 O -0.58 -29.24 16.50 15.78 0.26 -28.98 16 12 N -0.70 -28.85 5.55 -466.80 -2.59 -31.44 16 13 C 0.27 14.32 5.43 85.63 0.46 14.78 16 14 C -0.56 -29.78 9.28 25.60 0.24 -29.55 16 15 H 0.09 4.12 7.60 -2.91 -0.02 4.10 16 16 C 0.01 0.29 5.46 84.66 0.46 0.75 16 17 N -0.93 -55.35 13.29 21.45 0.28 -55.06 16 18 Si 0.99 41.79 29.54 68.60 2.03 43.81 16 19 H -0.25 -9.93 7.11 99.48 0.71 -9.23 16 20 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 21 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 22 C -0.07 -1.08 4.76 -19.86 -0.09 -1.18 16 23 C -0.12 -1.58 8.71 22.27 0.19 -1.39 16 24 C -0.13 -1.56 10.05 22.27 0.22 -1.33 16 25 C -0.14 -1.77 10.05 22.27 0.22 -1.55 16 26 C -0.13 -1.94 10.05 22.27 0.22 -1.72 16 27 C -0.14 -2.26 8.98 22.27 0.20 -2.06 16 28 H 0.07 0.61 7.39 -2.38 -0.02 0.59 16 29 H 0.07 0.66 6.43 -2.39 -0.02 0.65 16 30 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.07 0.66 6.43 -2.39 -0.02 0.65 16 33 H 0.07 0.61 7.39 -2.38 -0.02 0.59 16 34 H 0.07 1.15 7.47 -2.38 -0.02 1.14 16 35 H 0.07 1.15 7.47 -2.39 -0.02 1.14 16 36 H 0.13 1.62 6.43 -2.39 -0.02 1.60 16 37 H 0.13 1.61 6.43 -2.38 -0.02 1.60 16 38 H 0.12 2.92 8.13 -2.39 -0.02 2.90 16 39 H 0.12 2.92 8.13 -2.39 -0.02 2.90 16 40 H 0.41 13.71 8.32 -92.71 -0.77 12.94 16 41 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 42 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 43 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 44 H 0.13 1.26 7.10 -2.91 -0.02 1.24 16 45 H 0.14 1.08 8.06 -2.91 -0.02 1.06 16 46 H 0.14 1.20 8.06 -2.91 -0.02 1.17 16 47 H 0.13 1.54 8.06 -2.91 -0.02 1.51 16 48 H 0.12 2.03 5.90 -2.91 -0.02 2.02 16 Total: -1.00 -74.85 395.73 5.24 -69.62 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: 0.20 Total: 21.12 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: 5.15 Total: 6.12 kcal Atomic # 7 Polarization: -84.19 SS G_CDS: -2.30 Total: -86.50 kcal Atomic # 8 Polarization: -54.34 SS G_CDS: 0.17 Total: -54.17 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.81 kcal Total: -74.85 5.24 -69.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754291607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.237 kcal (2) G-P(sol) polarization free energy of solvation -74.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds