Wall clock time and date at job start Tue Mar 31 2020 17:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42901 * 109.47325 * 2 1 4 4 C 1.53007 * 109.47027 * 120.00112 * 2 1 3 5 5 C 1.53004 * 109.47027 * 179.97438 * 4 2 1 6 6 C 1.52992 * 109.47331 * 299.99704 * 5 4 2 7 7 N 1.46495 * 109.47246 * 179.97438 * 6 5 4 8 8 C 1.34783 * 119.99931 * 155.00072 * 7 6 5 9 9 O 1.21281 * 119.99796 * 0.02562 * 8 7 6 10 10 C 1.50697 * 119.99878 * 180.02562 * 8 7 6 11 11 C 1.50699 * 109.46970 * 180.02562 * 10 8 7 12 12 C 1.38328 * 119.96224 * 270.02075 * 11 10 8 13 13 C 1.38280 * 120.13484 * 180.02562 * 12 11 10 14 14 C 1.38120 * 120.07150 * 359.67534 * 13 12 11 15 15 C 1.38861 * 119.92830 * 0.59673 * 14 13 12 16 16 O 1.35751 * 120.06597 * 179.69892 * 15 14 13 17 17 C 1.34829 * 117.00376 * 354.17384 * 16 15 14 18 18 H 1.07998 * 119.99999 * 5.03596 * 17 16 15 19 19 C 1.38657 * 120.00083 * 185.03464 * 17 16 15 20 20 N 1.31555 * 119.99797 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 119.99748 * 0.02562 * 19 17 16 22 22 H 1.48496 * 109.47410 * 90.00109 * 21 19 17 23 23 H 1.48504 * 109.46801 * 209.99865 * 21 19 17 24 24 H 1.48497 * 109.47495 * 329.99577 * 21 19 17 25 25 C 1.38073 * 119.96952 * 89.99515 * 11 10 8 26 26 C 1.53007 * 109.46823 * 60.00171 * 6 5 4 27 27 C 1.53001 * 109.47290 * 240.00048 * 2 1 3 28 28 H 1.08997 * 109.46848 * 300.00029 * 1 2 3 29 29 H 1.08998 * 109.46713 * 60.00403 * 1 2 3 30 30 H 1.08999 * 109.46706 * 179.97438 * 1 2 3 31 31 H 0.96701 * 114.00138 * 300.00147 * 3 2 1 32 32 H 1.09000 * 109.47121 * 59.99588 * 4 2 1 33 33 H 1.09003 * 109.46627 * 300.00054 * 4 2 1 34 34 H 1.08998 * 109.46713 * 179.97438 * 5 4 2 35 35 H 1.08999 * 109.46706 * 60.00284 * 5 4 2 36 36 H 1.08998 * 109.47401 * 300.00693 * 6 5 4 37 37 H 0.97001 * 120.00257 * 335.00869 * 7 6 5 38 38 H 1.08996 * 109.47386 * 59.99804 * 10 8 7 39 39 H 1.08997 * 109.47038 * 299.99640 * 10 8 7 40 40 H 1.08001 * 119.93314 * 359.97438 * 12 11 10 41 41 H 1.08007 * 119.96121 * 179.97438 * 13 12 11 42 42 H 1.08001 * 120.03709 * 180.32387 * 14 13 12 43 43 H 0.96998 * 119.99749 * 179.97438 * 20 19 17 44 44 H 1.08001 * 120.03594 * 0.04940 * 25 11 10 45 45 H 1.08993 * 109.47402 * 60.00125 * 26 6 5 46 46 H 1.09003 * 109.46627 * 179.97438 * 26 6 5 47 47 H 1.09001 * 109.47052 * 299.99629 * 27 2 1 48 48 H 1.08991 * 109.47309 * 59.99990 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5701 -0.7219 1.2490 6 6 4.0796 -1.4435 -0.0002 7 7 5.5445 -1.4435 -0.0008 8 6 6.2182 -2.3998 -0.6703 9 8 5.6115 -3.2601 -1.2725 10 6 7.7251 -2.4002 -0.6704 11 6 8.2271 -3.5638 -1.4858 12 6 8.4568 -4.7852 -0.8782 13 6 8.9179 -5.8552 -1.6229 14 6 9.1442 -5.7092 -2.9776 15 6 8.9200 -4.4829 -3.5893 16 8 9.1474 -4.3347 -4.9194 17 6 9.7039 -5.3792 -5.5655 18 1 9.8728 -6.3093 -5.0433 19 6 10.0592 -5.2591 -6.9004 20 7 10.6026 -6.2780 -7.5305 21 14 9.7676 -3.6501 -7.8034 22 1 10.9632 -2.7805 -7.6640 23 1 9.5220 -3.9271 -9.2415 24 1 8.5858 -2.9636 -7.2227 25 6 8.4568 -3.4101 -2.8386 26 6 3.5696 -0.7222 -1.2495 27 6 2.0401 -0.7212 -1.2492 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.7211 1.8654 -0.7650 32 1 1.6766 -1.7489 1.2493 33 1 1.6766 -0.2074 2.1392 34 1 3.9333 -1.2353 2.1392 35 1 3.9337 0.3057 1.2488 36 1 3.7158 -2.4710 0.0000 37 1 6.0298 -0.7553 0.4807 38 1 8.0886 -2.4897 0.3533 39 1 8.0886 -1.4689 -1.1049 40 1 8.2764 -4.9030 0.1800 41 1 9.0966 -6.8074 -1.1456 42 1 9.4994 -6.5468 -3.5597 43 1 10.8509 -6.1942 -8.4645 44 1 8.2777 -2.4562 -3.3123 45 1 3.9333 0.3053 -1.2497 46 1 3.9330 -1.2361 -2.1394 47 1 1.6768 -1.7489 -1.2492 48 1 1.6768 -0.2075 -2.1392 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760392073.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:44 Heat of formation + Delta-G solvation = -133.366940 kcal Electronic energy + Delta-G solvation = -28248.729565 eV Core-core repulsion = 24267.344428 eV Total energy + Delta-G solvation = -3981.385137 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.35967 -40.80172 -39.94176 -38.32321 -36.71590 -34.49373 -34.33236 -33.46218 -31.85224 -31.62816 -31.04206 -28.67590 -27.24827 -26.56396 -23.90074 -23.44041 -22.89851 -22.07599 -21.38506 -20.77696 -19.66181 -18.91313 -18.04528 -17.32531 -17.19322 -16.87569 -16.75637 -16.23422 -16.06007 -15.67964 -15.66132 -15.55020 -15.08831 -14.80812 -14.63951 -14.40725 -14.27381 -14.12526 -13.97193 -13.71860 -13.32572 -13.25541 -13.04462 -12.89657 -12.71481 -12.53158 -12.47269 -12.46105 -12.37580 -12.31782 -12.01433 -11.93843 -11.53330 -11.32011 -11.15978 -10.95704 -10.89072 -10.63933 -9.98942 -9.66820 -9.06902 -8.51099 -6.23780 0.48468 0.69635 1.28431 1.33237 1.49987 1.72140 2.24509 2.26960 2.78225 3.04629 3.14148 3.36068 3.68315 3.72207 3.78526 3.91585 4.04228 4.06843 4.13831 4.19567 4.29974 4.39203 4.42239 4.44197 4.53119 4.55286 4.65154 4.68888 4.70514 4.73192 4.87277 4.90165 4.97547 4.99831 5.08931 5.18140 5.19097 5.24826 5.30987 5.33964 5.38766 5.43948 5.61643 5.64722 5.72262 5.76024 5.90999 6.24679 6.65096 6.83158 6.92470 7.37046 7.58244 8.60777 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015766 B = 0.002383 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.495761 B =11748.558864 C =12905.182239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.133 3.867 3 O -0.568 6.568 4 C -0.104 4.104 5 C -0.111 4.111 6 C 0.147 3.853 7 N -0.714 5.714 8 C 0.514 3.486 9 O -0.579 6.579 10 C -0.091 4.091 11 C -0.027 4.027 12 C -0.171 4.171 13 C -0.078 4.078 14 C -0.241 4.241 15 C 0.118 3.882 16 O -0.247 6.247 17 C -0.400 4.400 18 H 0.080 0.920 19 C 0.009 3.991 20 N -0.923 5.923 21 Si 0.972 3.028 22 H -0.261 1.261 23 H -0.265 1.265 24 H -0.268 1.268 25 C -0.182 4.182 26 C -0.122 4.122 27 C -0.140 4.140 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.387 0.613 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.061 0.939 37 H 0.417 0.583 38 H 0.143 0.857 39 H 0.125 0.875 40 H 0.148 0.852 41 H 0.141 0.859 42 H 0.107 0.893 43 H 0.285 0.715 44 H 0.120 0.880 45 H 0.075 0.925 46 H 0.033 0.967 47 H 0.066 0.934 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.472 17.705 22.213 33.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.093 3.907 3 O -0.375 6.375 4 C -0.142 4.142 5 C -0.149 4.149 6 C 0.042 3.958 7 N -0.367 5.367 8 C 0.301 3.699 9 O -0.458 6.458 10 C -0.130 4.130 11 C -0.028 4.028 12 C -0.189 4.189 13 C -0.096 4.096 14 C -0.260 4.260 15 C 0.070 3.930 16 O -0.155 6.155 17 C -0.476 4.476 18 H 0.097 0.903 19 C -0.189 4.189 20 N -0.564 5.564 21 Si 0.794 3.206 22 H -0.186 1.186 23 H -0.190 1.190 24 H -0.193 1.193 25 C -0.201 4.201 26 C -0.160 4.160 27 C -0.178 4.178 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.236 0.764 32 H 0.098 0.902 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.079 0.921 37 H 0.254 0.746 38 H 0.161 0.839 39 H 0.143 0.857 40 H 0.166 0.834 41 H 0.158 0.842 42 H 0.125 0.875 43 H 0.094 0.906 44 H 0.138 0.862 45 H 0.094 0.906 46 H 0.052 0.948 47 H 0.085 0.915 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -17.589 16.999 22.015 32.910 hybrid contribution 0.141 0.023 -1.564 1.571 sum -17.448 17.022 20.451 31.819 Atomic orbital electron populations 1.22454 0.94777 1.03154 1.02994 1.21149 0.92827 0.82370 0.94387 1.86494 1.77520 1.23170 1.50362 1.21531 0.94949 1.00532 0.97206 1.21637 0.96079 1.01323 0.95882 1.20939 0.79507 0.99459 0.95890 1.45938 1.07030 1.30405 1.53324 1.20942 0.90596 0.80661 0.77700 1.90753 1.71246 1.39315 1.44460 1.20715 0.90546 0.98236 1.03547 1.19231 0.96122 0.95665 0.91735 1.21018 1.04792 0.92315 1.00812 1.21118 0.96615 0.99821 0.92058 1.21319 1.10146 0.97457 0.97105 1.19598 0.95272 0.94841 0.83333 1.83505 1.73263 1.40807 1.17942 1.20716 1.39744 0.91852 0.95317 0.90289 1.25287 0.95244 1.02190 0.96195 1.69730 1.41906 1.32383 1.12416 0.85210 0.79601 0.78349 0.77479 1.18619 1.19007 1.19252 1.20271 1.08403 0.97361 0.94112 1.21754 0.96215 1.00936 0.97132 1.22177 0.94951 1.01705 0.99018 0.91483 0.91600 0.91335 0.76431 0.90195 0.89946 0.90342 0.90138 0.92095 0.74597 0.83890 0.85690 0.83389 0.84165 0.87514 0.90553 0.86179 0.90632 0.94795 0.91540 0.90772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.57 8.82 71.98 0.63 -0.93 16 2 C 0.13 1.52 0.98 -10.79 -0.01 1.51 16 3 O -0.57 -6.65 11.63 -148.98 -1.73 -8.38 16 4 C -0.10 -1.17 4.95 30.60 0.15 -1.02 16 5 C -0.11 -1.34 5.25 30.59 0.16 -1.18 16 6 C 0.15 2.62 2.45 44.99 0.11 2.73 16 7 N -0.71 -12.17 5.08 -442.54 -2.25 -14.42 16 8 C 0.51 12.94 7.79 87.66 0.68 13.62 16 9 O -0.58 -21.41 15.70 -3.03 -0.05 -21.46 16 10 C -0.09 -1.92 5.83 29.10 0.17 -1.75 16 11 C -0.03 -0.89 4.37 -19.88 -0.09 -0.97 16 12 C -0.17 -5.52 9.70 22.30 0.22 -5.30 16 13 C -0.08 -2.92 10.04 22.25 0.22 -2.70 16 14 C -0.24 -11.46 9.17 22.39 0.21 -11.25 16 15 C 0.12 5.99 6.65 22.58 0.15 6.14 16 16 O -0.25 -14.31 8.59 -22.74 -0.20 -14.50 16 17 C -0.40 -24.75 9.95 67.92 0.68 -24.08 16 18 H 0.08 5.12 5.44 -2.91 -0.02 5.10 16 19 C 0.01 0.54 5.49 84.83 0.47 1.00 16 20 N -0.92 -56.84 13.96 21.61 0.30 -56.54 16 21 Si 0.97 47.23 28.62 68.60 1.96 49.19 16 22 H -0.26 -12.04 7.11 99.48 0.71 -11.34 16 23 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 24 H -0.27 -13.21 7.11 99.48 0.71 -12.51 16 25 C -0.18 -7.62 9.64 22.39 0.22 -7.40 16 26 C -0.12 -2.31 5.35 30.58 0.16 -2.14 16 27 C -0.14 -2.06 4.91 30.58 0.15 -1.91 16 28 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.39 2.30 9.05 -74.06 -0.67 1.63 16 32 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.08 0.96 7.68 -2.39 -0.02 0.94 16 36 H 0.06 1.42 7.58 -2.39 -0.02 1.40 16 37 H 0.42 4.04 8.60 -92.71 -0.80 3.24 16 38 H 0.14 1.82 8.09 -2.39 -0.02 1.80 16 39 H 0.13 2.06 8.08 -2.39 -0.02 2.04 16 40 H 0.15 3.56 8.06 -2.91 -0.02 3.54 16 41 H 0.14 4.30 8.06 -2.91 -0.02 4.28 16 42 H 0.11 5.52 5.64 -2.91 -0.02 5.50 16 43 H 0.28 16.02 8.31 -92.71 -0.77 15.25 16 44 H 0.12 4.72 8.06 -2.91 -0.02 4.70 16 45 H 0.08 1.32 7.68 -2.39 -0.02 1.30 16 46 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 47 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 48 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -81.09 389.82 1.83 -79.26 By element: Atomic # 1 Polarization: 22.97 SS G_CDS: -0.49 Total: 22.49 kcal Atomic # 6 Polarization: -39.92 SS G_CDS: 4.28 Total: -35.64 kcal Atomic # 7 Polarization: -69.01 SS G_CDS: -1.94 Total: -70.96 kcal Atomic # 8 Polarization: -42.37 SS G_CDS: -1.98 Total: -44.34 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 1.96 Total: 49.19 kcal Total: -81.09 1.83 -79.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760392073.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.110 kcal (2) G-P(sol) polarization free energy of solvation -81.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds