Wall clock time and date at job start Tue Mar 31 2020 18:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42903 * 113.99579 * 2 1 4 4 H 1.09004 * 112.91093 * 338.25309 * 3 2 1 5 5 C 1.53783 * 113.61340 * 109.51046 * 3 2 1 6 6 C 1.53773 * 87.08161 * 89.11340 * 5 3 2 7 7 H 1.08998 * 113.61794 * 270.88397 * 6 5 3 8 8 N 1.46500 * 113.61375 * 140.06501 * 6 5 3 9 9 C 1.34780 * 120.00067 * 104.50325 * 8 6 5 10 10 O 1.21279 * 119.99743 * 0.02562 * 9 8 6 11 11 C 1.50699 * 120.00146 * 180.02562 * 9 8 6 12 12 C 1.50694 * 109.47079 * 180.02562 * 11 9 8 13 13 C 1.38328 * 119.96206 * 269.71943 * 12 11 9 14 14 C 1.38282 * 120.13539 * 179.76989 * 13 12 11 15 15 C 1.38123 * 120.06866 * 0.51068 * 14 13 12 16 16 C 1.38852 * 119.93107 * 359.74281 * 15 14 13 17 17 O 1.35749 * 120.06825 * 179.97438 * 16 15 14 18 18 C 1.34830 * 117.00284 * 354.49822 * 17 16 15 19 19 H 1.08001 * 119.99336 * 5.05562 * 18 17 16 20 20 C 1.38649 * 120.00254 * 185.05082 * 18 17 16 21 21 N 1.31559 * 120.00328 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00000 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47171 * 60.00398 * 22 20 18 24 24 H 1.48507 * 109.47051 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.46998 * 300.00129 * 22 20 18 26 26 C 1.38080 * 119.96835 * 90.00090 * 12 11 9 27 27 C 1.53780 * 113.61174 * 207.00606 * 3 2 1 28 28 C 1.52997 * 113.61526 * 156.33799 * 27 3 2 29 29 C 1.52992 * 113.61684 * 25.43334 * 27 3 2 30 30 H 1.08998 * 109.46764 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46926 * 299.99477 * 1 2 3 32 32 H 1.08991 * 109.47327 * 59.99915 * 1 2 3 33 33 H 1.08997 * 113.61416 * 334.55944 * 5 3 2 34 34 H 1.08999 * 113.60876 * 203.66576 * 5 3 2 35 35 H 0.97000 * 119.99891 * 284.50122 * 8 6 5 36 36 H 1.09005 * 109.46992 * 300.00608 * 11 9 8 37 37 H 1.08999 * 109.46682 * 59.99756 * 11 9 8 38 38 H 1.07994 * 119.93156 * 0.02562 * 13 12 11 39 39 H 1.08001 * 119.96500 * 180.26078 * 14 13 12 40 40 H 1.07998 * 120.03335 * 179.72853 * 15 14 13 41 41 H 0.96990 * 120.00517 * 179.97438 * 21 20 18 42 42 H 1.07997 * 120.03163 * 359.95184 * 26 12 11 43 43 H 1.08996 * 109.47821 * 157.49715 * 28 27 3 44 44 H 1.09003 * 109.47059 * 277.49473 * 28 27 3 45 45 H 1.08999 * 109.47497 * 37.49072 * 28 27 3 46 46 H 1.09002 * 109.47103 * 322.50178 * 29 27 3 47 47 H 1.09003 * 109.47596 * 82.50295 * 29 27 3 48 48 H 1.09002 * 109.47222 * 202.50383 * 29 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3308 2.0725 -0.3720 5 6 2.6906 1.6769 1.3282 6 6 3.9723 1.0482 0.7567 7 1 4.0655 -0.0179 0.9635 8 7 5.1884 1.7987 1.0794 9 6 6.0314 1.3411 2.0263 10 8 5.7833 0.3078 2.6108 11 6 7.2820 2.1133 2.3587 12 6 8.0445 1.3930 3.4407 13 6 7.7964 1.6825 4.7704 14 6 8.4906 1.0203 5.7663 15 6 9.4417 0.0749 5.4356 16 6 9.6967 -0.2141 4.1017 17 8 10.6312 -1.1424 3.7735 18 6 11.3562 -1.6647 4.7832 19 1 11.1259 -1.4024 5.8052 20 6 12.3973 -2.5386 4.5094 21 7 12.6781 -2.8578 3.2644 22 14 13.4022 -3.2616 5.9083 23 1 12.5112 -4.0362 6.8090 24 1 14.4479 -4.1588 5.3544 25 1 14.0467 -2.1641 6.6735 26 6 8.9941 0.4490 3.1037 27 6 3.4076 1.3577 -0.6398 28 6 3.7910 2.7435 -1.1626 29 6 3.6558 0.2462 -1.6615 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5138 -0.8899 33 1 2.2886 1.1428 2.1890 34 1 2.7676 2.7515 1.4937 35 1 5.3869 2.6249 0.6116 36 1 7.9056 2.1957 1.4685 37 1 7.0116 3.1104 2.7064 38 1 7.0562 2.4243 5.0314 39 1 8.2917 1.2455 6.8037 40 1 9.9866 -0.4388 6.2138 41 1 13.4066 -3.4688 3.0729 42 1 9.1899 0.2261 2.0653 43 1 4.8764 2.8205 -1.2264 44 1 3.3576 2.8915 -2.1517 45 1 3.4121 3.5062 -0.4822 46 1 3.1858 -0.6751 -1.3174 47 1 3.2300 0.5344 -2.6226 48 1 4.7285 0.0875 -1.7723 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760395541.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:26 Heat of formation + Delta-G solvation = -64.155696 kcal Electronic energy + Delta-G solvation = -28194.329990 eV Core-core repulsion = 24215.946078 eV Total energy + Delta-G solvation = -3978.383912 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.94726 -39.36453 -38.53835 -36.81383 -36.28297 -33.36829 -32.30075 -31.84907 -30.79289 -29.12723 -27.95196 -27.36999 -26.74791 -25.22550 -24.26900 -22.75253 -21.60617 -21.11220 -20.12479 -19.06051 -17.62728 -17.24096 -16.84538 -16.78879 -15.88075 -15.77407 -15.27816 -15.14720 -14.87992 -14.37404 -14.33132 -14.23314 -13.88815 -13.62077 -13.40920 -13.36403 -13.26648 -12.69411 -12.56082 -12.49619 -12.38298 -12.24264 -12.04764 -11.84066 -11.72908 -11.45852 -11.24541 -11.18774 -10.93245 -10.76932 -10.70917 -10.54613 -10.44413 -10.38738 -9.78096 -9.59964 -9.25869 -8.96453 -8.75829 -7.97300 -7.13000 -6.36544 -3.95518 2.18495 2.48261 2.84518 3.18324 3.18629 3.22062 3.22575 3.34070 4.03487 4.08738 4.19376 4.55026 4.61864 4.65121 4.84004 4.85638 4.97961 5.00678 5.05548 5.17081 5.19362 5.25926 5.27896 5.29417 5.35467 5.35606 5.56696 5.57668 5.58913 5.71036 5.74043 5.76694 5.82895 5.93322 5.99838 6.01994 6.18864 6.26309 6.42582 6.51732 6.74841 6.88011 7.00751 7.15284 7.35657 7.45216 7.52320 7.56484 7.92023 8.08655 8.42313 9.09119 9.80822 10.81812 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.018532 B = 0.002190 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.530596 B =12780.957844 C =13201.750051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.363 6.363 3 C 0.073 3.927 4 H 0.077 0.923 5 C -0.173 4.173 6 C 0.142 3.858 7 H 0.118 0.882 8 N -0.730 5.730 9 C 0.513 3.487 10 O -0.517 6.517 11 C -0.095 4.095 12 C -0.032 4.032 13 C -0.197 4.197 14 C -0.075 4.075 15 C -0.231 4.231 16 C 0.155 3.845 17 O -0.180 6.180 18 C -0.390 4.390 19 H 0.091 0.909 20 C 0.038 3.962 21 N -0.865 5.865 22 Si 0.940 3.060 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.270 1.270 26 C -0.174 4.174 27 C -0.092 4.092 28 C -0.133 4.133 29 C -0.134 4.134 30 H 0.087 0.913 31 H 0.042 0.958 32 H 0.041 0.959 33 H 0.078 0.922 34 H 0.091 0.909 35 H 0.397 0.603 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.102 0.898 39 H 0.107 0.893 40 H 0.126 0.874 41 H 0.269 0.731 42 H 0.113 0.887 43 H 0.067 0.933 44 H 0.065 0.935 45 H 0.061 0.939 46 H 0.070 0.930 47 H 0.054 0.946 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.423 13.683 -8.812 26.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.281 6.281 3 C 0.014 3.986 4 H 0.095 0.905 5 C -0.212 4.212 6 C 0.037 3.963 7 H 0.136 0.864 8 N -0.383 5.383 9 C 0.300 3.700 10 O -0.390 6.390 11 C -0.135 4.135 12 C -0.033 4.033 13 C -0.216 4.216 14 C -0.093 4.093 15 C -0.251 4.251 16 C 0.101 3.899 17 O -0.084 6.084 18 C -0.467 4.467 19 H 0.108 0.892 20 C -0.166 4.166 21 N -0.501 5.501 22 Si 0.765 3.235 23 H -0.195 1.195 24 H -0.203 1.203 25 H -0.196 1.196 26 C -0.194 4.194 27 C -0.093 4.093 28 C -0.191 4.191 29 C -0.192 4.192 30 H 0.105 0.895 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.097 0.903 34 H 0.109 0.891 35 H 0.233 0.767 36 H 0.117 0.883 37 H 0.115 0.885 38 H 0.120 0.880 39 H 0.125 0.875 40 H 0.143 0.857 41 H 0.079 0.921 42 H 0.131 0.869 43 H 0.086 0.914 44 H 0.084 0.916 45 H 0.080 0.920 46 H 0.089 0.911 47 H 0.073 0.927 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -21.223 12.480 -8.711 26.116 hybrid contribution 0.290 0.249 0.586 0.700 sum -20.933 12.729 -8.125 25.811 Atomic orbital electron populations 1.22812 0.80895 1.02927 0.99899 1.87901 1.19628 1.26122 1.94458 1.23006 0.93844 0.85312 0.96416 0.90496 1.23959 0.97395 1.01568 0.98294 1.22466 0.82542 0.97972 0.93348 0.86442 1.46085 1.23738 1.27545 1.40977 1.20793 0.84352 0.85858 0.79008 1.90760 1.74609 1.23551 1.50099 1.20602 0.94057 0.99125 0.99675 1.18656 0.95285 0.96352 0.92962 1.20342 1.04119 1.04926 0.92171 1.20672 0.95295 0.95440 0.97925 1.21165 1.03695 1.03779 0.96413 1.19275 0.89735 0.88464 0.92383 1.83976 1.42325 1.46419 1.35643 1.21265 1.12060 1.26285 0.87061 0.89205 1.25266 0.96701 0.96799 0.97794 1.70030 1.29071 1.32991 1.17975 0.85795 0.79097 0.78958 0.79644 1.19545 1.20338 1.19562 1.19945 1.00973 1.00425 0.98026 1.22497 0.94386 0.97054 0.95347 1.21600 1.02079 0.94053 1.01345 1.21617 1.01808 0.98275 0.97453 0.89458 0.93979 0.94032 0.90327 0.89074 0.76741 0.88322 0.88497 0.88001 0.87528 0.85654 0.92084 0.86858 0.91386 0.91647 0.91998 0.91054 0.92730 0.92350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.86 101.05 1.10 1.30 16 2 O -0.36 -3.53 9.17 -35.23 -0.32 -3.85 16 3 C 0.07 0.60 3.77 -25.92 -0.10 0.50 16 4 H 0.08 0.49 7.86 -51.93 -0.41 0.08 16 5 C -0.17 -1.60 7.36 -25.92 -0.19 -1.79 16 6 C 0.14 1.56 3.58 -67.12 -0.24 1.32 16 7 H 0.12 1.70 7.49 -51.93 -0.39 1.31 16 8 N -0.73 -7.85 5.26 -53.02 -0.28 -8.12 16 9 C 0.51 7.70 7.82 -10.98 -0.09 7.61 16 10 O -0.52 -10.49 15.67 5.56 0.09 -10.40 16 11 C -0.09 -1.29 5.83 -29.04 -0.17 -1.46 16 12 C -0.03 -0.60 4.37 -104.65 -0.46 -1.06 16 13 C -0.20 -3.67 9.70 -39.53 -0.38 -4.05 16 14 C -0.08 -1.49 10.04 -39.61 -0.40 -1.89 16 15 C -0.23 -5.37 9.17 -39.40 -0.36 -5.73 16 16 C 0.15 3.98 6.65 -39.11 -0.26 3.72 16 17 O -0.18 -5.37 9.76 0.05 0.00 -5.37 16 18 C -0.39 -11.34 9.49 30.88 0.29 -11.04 16 19 H 0.09 2.42 5.20 -52.49 -0.27 2.14 16 20 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 21 N -0.87 -26.13 13.67 55.48 0.76 -25.37 16 22 Si 0.94 21.18 29.55 -169.99 -5.02 16.16 16 23 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 24 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 25 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 26 C -0.17 -3.94 9.65 -39.39 -0.38 -4.32 16 27 C -0.09 -0.76 1.35 -153.70 -0.21 -0.96 16 28 C -0.13 -0.76 8.08 37.16 0.30 -0.46 16 29 C -0.13 -1.21 9.04 37.15 0.34 -0.87 16 30 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.04 0.22 8.14 -51.93 -0.42 -0.21 16 33 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.09 0.69 7.65 -51.93 -0.40 0.29 16 35 H 0.40 2.97 6.59 -40.82 -0.27 2.70 16 36 H 0.10 1.15 8.08 -51.93 -0.42 0.73 16 37 H 0.10 1.01 8.08 -51.93 -0.42 0.59 16 38 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 39 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 40 H 0.13 2.88 5.64 -52.49 -0.30 2.59 16 41 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 42 H 0.11 2.49 8.06 -52.49 -0.42 2.06 16 43 H 0.07 0.37 7.05 -51.93 -0.37 0.00 16 44 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 45 H 0.06 0.29 7.34 -51.93 -0.38 -0.09 16 46 H 0.07 0.74 6.96 -51.93 -0.36 0.38 16 47 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 48 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 394.08 15.07 5.94 5.94 Total: -1.00 -35.84 394.08 -7.48 -43.33 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -7.34 Total: 5.91 kcal Atomic # 6 Polarization: -16.91 SS G_CDS: -1.30 Total: -18.21 kcal Atomic # 7 Polarization: -33.98 SS G_CDS: 0.48 Total: -33.50 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -0.24 Total: -19.62 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.84 -7.48 -43.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760395541.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.830 kcal (2) G-P(sol) polarization free energy of solvation -35.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds