Wall clock time and date at job start Tue Mar 31 2020 18:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42903 * 113.99579 * 2 1 4 4 H 1.09004 * 112.91093 * 338.25309 * 3 2 1 5 5 C 1.53783 * 113.61340 * 109.51046 * 3 2 1 6 6 C 1.53773 * 87.08161 * 89.11340 * 5 3 2 7 7 H 1.08998 * 113.61794 * 270.88397 * 6 5 3 8 8 N 1.46500 * 113.61375 * 140.06501 * 6 5 3 9 9 C 1.34780 * 120.00067 * 104.50325 * 8 6 5 10 10 O 1.21279 * 119.99743 * 0.02562 * 9 8 6 11 11 C 1.50699 * 120.00146 * 180.02562 * 9 8 6 12 12 C 1.50694 * 109.47079 * 180.02562 * 11 9 8 13 13 C 1.38328 * 119.96206 * 269.71943 * 12 11 9 14 14 C 1.38282 * 120.13539 * 179.76989 * 13 12 11 15 15 C 1.38123 * 120.06866 * 0.51068 * 14 13 12 16 16 C 1.38852 * 119.93107 * 359.74281 * 15 14 13 17 17 O 1.35749 * 120.06825 * 179.97438 * 16 15 14 18 18 C 1.34830 * 117.00284 * 354.49822 * 17 16 15 19 19 H 1.08001 * 119.99336 * 5.05562 * 18 17 16 20 20 C 1.38649 * 120.00254 * 185.05082 * 18 17 16 21 21 N 1.31559 * 120.00328 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00000 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47171 * 60.00398 * 22 20 18 24 24 H 1.48507 * 109.47051 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.46998 * 300.00129 * 22 20 18 26 26 C 1.38080 * 119.96835 * 90.00090 * 12 11 9 27 27 C 1.53780 * 113.61174 * 207.00606 * 3 2 1 28 28 C 1.52997 * 113.61526 * 156.33799 * 27 3 2 29 29 C 1.52992 * 113.61684 * 25.43334 * 27 3 2 30 30 H 1.08998 * 109.46764 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46926 * 299.99477 * 1 2 3 32 32 H 1.08991 * 109.47327 * 59.99915 * 1 2 3 33 33 H 1.08997 * 113.61416 * 334.55944 * 5 3 2 34 34 H 1.08999 * 113.60876 * 203.66576 * 5 3 2 35 35 H 0.97000 * 119.99891 * 284.50122 * 8 6 5 36 36 H 1.09005 * 109.46992 * 300.00608 * 11 9 8 37 37 H 1.08999 * 109.46682 * 59.99756 * 11 9 8 38 38 H 1.07994 * 119.93156 * 0.02562 * 13 12 11 39 39 H 1.08001 * 119.96500 * 180.26078 * 14 13 12 40 40 H 1.07998 * 120.03335 * 179.72853 * 15 14 13 41 41 H 0.96990 * 120.00517 * 179.97438 * 21 20 18 42 42 H 1.07997 * 120.03163 * 359.95184 * 26 12 11 43 43 H 1.08996 * 109.47821 * 157.49715 * 28 27 3 44 44 H 1.09003 * 109.47059 * 277.49473 * 28 27 3 45 45 H 1.08999 * 109.47497 * 37.49072 * 28 27 3 46 46 H 1.09002 * 109.47103 * 322.50178 * 29 27 3 47 47 H 1.09003 * 109.47596 * 82.50295 * 29 27 3 48 48 H 1.09002 * 109.47222 * 202.50383 * 29 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3308 2.0725 -0.3720 5 6 2.6906 1.6769 1.3282 6 6 3.9723 1.0482 0.7567 7 1 4.0655 -0.0179 0.9635 8 7 5.1884 1.7987 1.0794 9 6 6.0314 1.3411 2.0263 10 8 5.7833 0.3078 2.6108 11 6 7.2820 2.1133 2.3587 12 6 8.0445 1.3930 3.4407 13 6 7.7964 1.6825 4.7704 14 6 8.4906 1.0203 5.7663 15 6 9.4417 0.0749 5.4356 16 6 9.6967 -0.2141 4.1017 17 8 10.6312 -1.1424 3.7735 18 6 11.3562 -1.6647 4.7832 19 1 11.1259 -1.4024 5.8052 20 6 12.3973 -2.5386 4.5094 21 7 12.6781 -2.8578 3.2644 22 14 13.4022 -3.2616 5.9083 23 1 12.5112 -4.0362 6.8090 24 1 14.4479 -4.1588 5.3544 25 1 14.0467 -2.1641 6.6735 26 6 8.9941 0.4490 3.1037 27 6 3.4076 1.3577 -0.6398 28 6 3.7910 2.7435 -1.1626 29 6 3.6558 0.2462 -1.6615 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5138 -0.8899 33 1 2.2886 1.1428 2.1890 34 1 2.7676 2.7515 1.4937 35 1 5.3869 2.6249 0.6116 36 1 7.9056 2.1957 1.4685 37 1 7.0116 3.1104 2.7064 38 1 7.0562 2.4243 5.0314 39 1 8.2917 1.2455 6.8037 40 1 9.9866 -0.4388 6.2138 41 1 13.4066 -3.4688 3.0729 42 1 9.1899 0.2261 2.0653 43 1 4.8764 2.8205 -1.2264 44 1 3.3576 2.8915 -2.1517 45 1 3.4121 3.5062 -0.4822 46 1 3.1858 -0.6751 -1.3174 47 1 3.2300 0.5344 -2.6226 48 1 4.7285 0.0875 -1.7723 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760395541.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:25 Heat of formation + Delta-G solvation = -89.044760 kcal Electronic energy + Delta-G solvation = -28195.409261 eV Core-core repulsion = 24215.946078 eV Total energy + Delta-G solvation = -3979.463183 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.77486 -40.87181 -39.97975 -38.18975 -37.41755 -34.45758 -34.31804 -33.32946 -31.50315 -30.87382 -28.72732 -28.48306 -27.46609 -27.22071 -25.20456 -23.45711 -23.27042 -22.69866 -21.40016 -19.92871 -19.41025 -18.75727 -18.01585 -17.86778 -16.83926 -16.63822 -16.52912 -16.43118 -16.12219 -15.93010 -15.73919 -15.50704 -15.08239 -15.05397 -14.67173 -14.41041 -14.26695 -13.99600 -13.96592 -13.59827 -13.28120 -13.05367 -13.01994 -12.94584 -12.88693 -12.62625 -12.46241 -12.40903 -12.39217 -12.21731 -12.12984 -11.88479 -11.67393 -11.21255 -11.18240 -10.87038 -10.77381 -10.40602 -9.93804 -9.62911 -8.97526 -8.46959 -6.15771 0.52616 0.76240 1.33262 1.44972 1.50252 1.68996 2.17706 2.26961 2.68579 2.85889 3.18732 3.37516 3.44734 3.53403 3.79823 3.82935 3.99383 4.10183 4.13318 4.23913 4.31671 4.32199 4.45231 4.49278 4.55435 4.58672 4.59299 4.65159 4.73017 4.74046 4.78243 4.86878 4.91457 4.97384 4.99986 5.07689 5.10288 5.12908 5.14216 5.31281 5.39394 5.45423 5.60084 5.65510 5.73064 5.75785 6.02752 6.24246 6.31270 6.63266 6.97231 7.35978 7.79154 8.76542 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.018532 B = 0.002190 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.530596 B =12780.957844 C =13201.750051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.394 6.394 3 C 0.076 3.924 4 H 0.107 0.893 5 C -0.166 4.166 6 C 0.126 3.874 7 H 0.071 0.929 8 N -0.705 5.705 9 C 0.512 3.488 10 O -0.582 6.582 11 C -0.091 4.091 12 C -0.025 4.025 13 C -0.181 4.181 14 C -0.074 4.074 15 C -0.248 4.248 16 C 0.111 3.889 17 O -0.235 6.235 18 C -0.415 4.415 19 H 0.100 0.900 20 C -0.025 4.025 21 N -0.923 5.923 22 Si 1.021 2.979 23 H -0.259 1.259 24 H -0.270 1.270 25 H -0.255 1.255 26 C -0.194 4.194 27 C -0.081 4.081 28 C -0.132 4.132 29 C -0.134 4.134 30 H 0.089 0.911 31 H 0.048 0.952 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.118 0.882 35 H 0.418 0.582 36 H 0.122 0.878 37 H 0.147 0.853 38 H 0.148 0.852 39 H 0.146 0.854 40 H 0.118 0.882 41 H 0.273 0.727 42 H 0.105 0.895 43 H 0.072 0.928 44 H 0.079 0.921 45 H 0.080 0.920 46 H 0.048 0.952 47 H 0.072 0.928 48 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.610 17.517 -8.417 30.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.313 6.313 3 C 0.017 3.983 4 H 0.124 0.876 5 C -0.205 4.205 6 C 0.020 3.980 7 H 0.089 0.911 8 N -0.359 5.359 9 C 0.300 3.700 10 O -0.461 6.461 11 C -0.130 4.130 12 C -0.026 4.026 13 C -0.199 4.199 14 C -0.092 4.092 15 C -0.267 4.267 16 C 0.061 3.939 17 O -0.142 6.142 18 C -0.491 4.491 19 H 0.117 0.883 20 C -0.222 4.222 21 N -0.561 5.561 22 Si 0.839 3.161 23 H -0.184 1.184 24 H -0.194 1.194 25 H -0.179 1.179 26 C -0.214 4.214 27 C -0.082 4.082 28 C -0.189 4.189 29 C -0.192 4.192 30 H 0.107 0.893 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.136 0.864 35 H 0.257 0.743 36 H 0.140 0.860 37 H 0.164 0.836 38 H 0.166 0.834 39 H 0.163 0.837 40 H 0.136 0.864 41 H 0.082 0.918 42 H 0.123 0.877 43 H 0.091 0.909 44 H 0.098 0.902 45 H 0.099 0.901 46 H 0.067 0.933 47 H 0.091 0.909 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -23.471 16.402 -8.349 29.826 hybrid contribution 0.673 -0.751 0.405 1.086 sum -22.798 15.651 -7.945 28.772 Atomic orbital electron populations 1.22971 0.79430 1.03578 1.01039 1.87882 1.21422 1.27429 1.94549 1.23088 0.94223 0.85442 0.95513 0.87571 1.23961 0.95885 1.02569 0.98056 1.22471 0.83294 0.95898 0.96325 0.91105 1.45863 1.22798 1.27782 1.39423 1.21023 0.84911 0.85016 0.79059 1.90755 1.76160 1.26344 1.52837 1.20725 0.93015 1.00219 0.99087 1.19212 0.93608 0.94582 0.95177 1.20982 1.03181 1.04192 0.91548 1.21141 0.93713 0.93862 1.00482 1.21293 1.05092 1.05131 0.95180 1.19887 0.90227 0.89282 0.94502 1.83935 1.44508 1.49009 1.36724 1.21794 1.12739 1.26943 0.87652 0.88261 1.26635 0.97661 0.96880 1.01035 1.70185 1.30471 1.34716 1.20745 0.84631 0.77228 0.78399 0.75811 1.18372 1.19425 1.17900 1.20229 1.02207 1.01664 0.97262 1.22527 0.94061 0.98381 0.93272 1.21656 1.02592 0.92218 1.02475 1.21598 1.00920 0.97989 0.98662 0.89263 0.93340 0.92251 0.92503 0.86419 0.74282 0.86045 0.83570 0.83428 0.83668 0.86441 0.91837 0.87709 0.90948 0.90230 0.90082 0.93255 0.90888 0.93477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.86 113.37 1.23 1.54 16 2 O -0.39 -7.48 9.17 -148.98 -1.37 -8.85 16 3 C 0.08 1.08 3.77 31.12 0.12 1.20 16 4 H 0.11 0.92 7.86 -2.38 -0.02 0.90 16 5 C -0.17 -2.75 7.36 31.12 0.23 -2.52 16 6 C 0.13 2.67 3.58 45.52 0.16 2.84 16 7 H 0.07 2.21 7.49 -2.39 -0.02 2.19 16 8 N -0.70 -13.59 5.26 -440.05 -2.31 -15.90 16 9 C 0.51 14.56 7.82 87.66 0.69 15.24 16 10 O -0.58 -24.01 15.67 -3.03 -0.05 -24.06 16 11 C -0.09 -2.18 5.83 29.10 0.17 -2.01 16 12 C -0.03 -0.91 4.37 -19.88 -0.09 -1.00 16 13 C -0.18 -6.14 9.70 22.30 0.22 -5.92 16 14 C -0.07 -2.79 10.04 22.25 0.22 -2.57 16 15 C -0.25 -11.79 9.17 22.39 0.21 -11.58 16 16 C 0.11 6.03 6.65 22.58 0.15 6.18 16 17 O -0.23 -15.11 9.76 -22.73 -0.22 -15.34 16 18 C -0.42 -25.59 9.49 67.92 0.64 -24.94 16 19 H 0.10 5.63 5.20 -2.91 -0.02 5.62 16 20 C -0.03 -1.49 5.49 84.83 0.47 -1.03 16 21 N -0.92 -59.01 13.67 21.61 0.30 -58.72 16 22 Si 1.02 44.78 29.55 68.60 2.03 46.81 16 23 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 24 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 25 H -0.25 -10.41 7.11 99.48 0.71 -9.70 16 26 C -0.19 -9.09 9.65 22.39 0.22 -8.88 16 27 C -0.08 -1.18 1.35 -51.66 -0.07 -1.25 16 28 C -0.13 -0.97 8.08 71.98 0.58 -0.39 16 29 C -0.13 -2.35 9.04 71.98 0.65 -1.70 16 30 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.05 0.50 8.14 -2.38 -0.02 0.48 16 32 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.12 1.31 7.65 -2.39 -0.02 1.29 16 35 H 0.42 4.57 6.59 -92.71 -0.61 3.96 16 36 H 0.12 2.42 8.08 -2.38 -0.02 2.40 16 37 H 0.15 2.12 8.08 -2.39 -0.02 2.11 16 38 H 0.15 3.75 8.06 -2.91 -0.02 3.73 16 39 H 0.15 4.31 8.06 -2.91 -0.02 4.28 16 40 H 0.12 5.63 5.64 -2.91 -0.02 5.61 16 41 H 0.27 15.94 8.31 -92.72 -0.77 15.17 16 42 H 0.10 4.91 8.06 -2.91 -0.02 4.89 16 43 H 0.07 0.49 7.05 -2.39 -0.02 0.47 16 44 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 45 H 0.08 0.32 7.34 -2.39 -0.02 0.31 16 46 H 0.05 1.07 6.96 -2.39 -0.02 1.06 16 47 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 48 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -88.41 394.08 4.52 -83.89 By element: Atomic # 1 Polarization: 28.60 SS G_CDS: 0.36 Total: 28.96 kcal Atomic # 6 Polarization: -42.59 SS G_CDS: 5.79 Total: -36.80 kcal Atomic # 7 Polarization: -72.60 SS G_CDS: -2.02 Total: -74.62 kcal Atomic # 8 Polarization: -46.61 SS G_CDS: -1.63 Total: -48.24 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -88.41 4.52 -83.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760395541.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.155 kcal (2) G-P(sol) polarization free energy of solvation -88.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds