Wall clock time and date at job start Tue Mar 31 2020 18:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46760 * 2 1 4 4 O 1.42899 * 109.44857 * 65.03760 * 3 2 1 5 5 C 1.53049 * 109.45666 * 185.00294 * 3 2 1 6 6 C 1.53195 * 109.30819 * 181.38788 * 5 3 2 7 7 N 1.46925 * 108.77601 * 305.36158 * 6 5 3 8 8 C 1.34781 * 120.63460 * 233.58864 * 7 6 5 9 9 O 1.21279 * 119.99460 * 0.02562 * 8 7 6 10 10 C 1.50694 * 120.00176 * 180.02562 * 8 7 6 11 11 C 1.50698 * 109.47229 * 180.02562 * 10 8 7 12 12 C 1.38317 * 119.96857 * 89.99420 * 11 10 8 13 13 C 1.38281 * 120.14162 * 179.74759 * 12 11 10 14 14 C 1.38120 * 120.06679 * 0.25682 * 13 12 11 15 15 C 1.38861 * 119.93162 * 0.02562 * 14 13 12 16 16 O 1.35753 * 120.06897 * 180.02562 * 15 14 13 17 17 C 1.34827 * 116.99898 * 354.46351 * 16 15 14 18 18 H 1.07999 * 120.00241 * 5.05726 * 17 16 15 19 19 C 1.38655 * 119.99607 * 185.06429 * 17 16 15 20 20 N 1.31555 * 120.00189 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99936 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47294 * 89.99553 * 21 19 17 23 23 H 1.48497 * 109.47322 * 209.99425 * 21 19 17 24 24 H 1.48503 * 109.46845 * 329.99371 * 21 19 17 25 25 C 1.38082 * 119.96289 * 270.25705 * 11 10 8 26 26 C 1.46930 * 118.73620 * 53.86436 * 7 6 5 27 27 C 1.53037 * 109.46116 * 305.06845 * 3 2 1 28 28 H 1.09000 * 109.47023 * 299.99402 * 1 2 3 29 29 H 1.08997 * 109.47618 * 60.00054 * 1 2 3 30 30 H 1.09001 * 109.46675 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47023 * 240.00598 * 2 1 3 32 32 H 1.08997 * 109.47618 * 119.99946 * 2 1 3 33 33 H 0.96699 * 113.99876 * 299.96713 * 4 3 2 34 34 H 1.08996 * 109.49551 * 61.43713 * 5 3 2 35 35 H 1.08999 * 109.49610 * 301.33619 * 5 3 2 36 36 H 1.09000 * 109.58199 * 185.57932 * 6 5 3 37 37 H 1.08996 * 109.58949 * 65.15041 * 6 5 3 38 38 H 1.09003 * 109.47374 * 59.99685 * 10 8 7 39 39 H 1.09003 * 109.47330 * 300.00070 * 10 8 7 40 40 H 1.08001 * 119.93129 * 0.02995 * 12 11 10 41 41 H 1.07998 * 119.97092 * 180.27901 * 13 12 11 42 42 H 1.08004 * 120.03647 * 179.97438 * 14 13 12 43 43 H 0.97002 * 119.99797 * 180.02562 * 20 19 17 44 44 H 1.08001 * 120.03832 * 359.97438 * 25 11 10 45 45 H 1.09001 * 109.58876 * 65.92720 * 26 7 6 46 46 H 1.09003 * 109.58709 * 186.35310 * 26 7 6 47 47 H 1.09003 * 109.49824 * 298.56614 * 27 3 2 48 48 H 1.09002 * 109.49758 * 58.66710 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 1.6623 2.0807 1.2216 5 6 3.5652 1.4441 -0.1258 6 6 4.0749 2.8884 -0.0906 7 7 3.3828 3.6597 -1.1321 8 6 4.0820 4.3610 -2.0463 9 8 5.2944 4.3589 -2.0145 10 6 3.3575 5.1476 -3.1080 11 6 4.3615 5.8348 -3.9972 12 6 4.8388 5.1926 -5.1254 13 6 5.7563 5.8219 -5.9467 14 6 6.2029 7.0923 -5.6395 15 6 5.7301 7.7373 -4.5043 16 8 6.1669 8.9861 -4.2000 17 6 7.1437 9.4987 -4.9751 18 1 7.4857 8.9548 -5.8432 19 6 7.7093 10.7242 -4.6576 20 7 7.2925 11.3869 -3.6003 21 14 9.0622 11.4349 -5.7319 22 1 8.4582 12.2705 -6.8005 23 1 9.9661 12.2707 -4.9015 24 1 9.8379 10.3283 -6.3476 25 6 4.8082 7.1027 -3.6817 26 6 1.9136 3.6569 -1.1543 27 6 1.4282 2.1996 -1.1810 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 0.7071 2.1159 1.3680 34 1 3.8529 0.9797 -1.0690 35 1 3.9992 0.8848 0.7030 36 1 5.1485 2.9016 -0.2789 37 1 3.8677 3.3253 0.8862 38 1 2.7193 5.8942 -2.6351 39 1 2.7451 4.4726 -3.7060 40 1 4.4908 4.1994 -5.3680 41 1 6.1237 5.3197 -6.8294 42 1 6.9198 7.5831 -6.2810 43 1 7.6880 12.2444 -3.3785 44 1 4.4381 7.6021 -2.7985 45 1 1.5337 4.1552 -0.2625 46 1 1.5607 4.1774 -2.0446 47 1 1.7361 1.7280 -2.1142 48 1 0.3412 2.1781 -1.1032 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760633120.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:49 Heat of formation + Delta-G solvation = -94.063384 kcal Electronic energy + Delta-G solvation = -28559.206951 eV Core-core repulsion = 24579.526145 eV Total energy + Delta-G solvation = -3979.680807 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.60869 -39.23783 -38.53003 -36.45820 -35.59881 -33.46534 -32.58313 -32.15694 -31.27923 -30.56465 -29.12343 -27.29325 -25.60295 -25.08809 -23.78334 -22.46554 -21.57172 -21.03745 -20.43715 -19.11305 -17.55332 -17.19243 -16.93611 -16.87585 -15.79558 -15.66379 -15.25012 -15.00229 -14.89670 -14.66410 -14.44865 -14.31967 -13.84897 -13.67308 -13.43373 -13.29303 -13.05480 -12.82130 -12.67605 -12.39182 -12.32182 -12.23994 -12.05114 -11.77160 -11.55664 -11.52953 -11.44575 -11.40492 -11.20046 -10.78725 -10.70041 -10.58225 -10.53867 -10.38543 -10.19406 -9.59481 -9.26057 -8.76717 -8.64544 -7.98360 -7.13914 -6.37084 -3.95952 2.16799 2.46919 2.81973 3.03270 3.17500 3.19097 3.23645 3.82023 4.02954 4.21637 4.29155 4.35766 4.54065 4.67967 4.72518 4.86562 4.97714 4.99523 5.04206 5.05415 5.16482 5.22819 5.24582 5.32432 5.37099 5.45454 5.51032 5.53194 5.57875 5.60430 5.69068 5.72308 5.76231 5.82012 5.84827 6.00377 6.02576 6.25142 6.41490 6.49313 6.73760 6.99572 7.14757 7.28646 7.34621 7.41841 7.44721 7.51920 7.90703 8.08111 8.35911 9.08709 9.80148 10.81300 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.027743 B = 0.002162 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.024848 B =12950.370621 C =13310.152068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.151 4.151 3 C 0.135 3.865 4 O -0.554 6.554 5 C -0.119 4.119 6 C 0.116 3.884 7 N -0.619 5.619 8 C 0.516 3.484 9 O -0.519 6.519 10 C -0.092 4.092 11 C -0.033 4.033 12 C -0.196 4.196 13 C -0.075 4.075 14 C -0.231 4.231 15 C 0.155 3.845 16 O -0.180 6.180 17 C -0.390 4.390 18 H 0.091 0.909 19 C 0.038 3.962 20 N -0.865 5.865 21 Si 0.940 3.060 22 H -0.274 1.274 23 H -0.278 1.278 24 H -0.268 1.268 25 C -0.173 4.173 26 C 0.112 3.888 27 C -0.164 4.164 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.372 0.628 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.091 0.909 37 H 0.072 0.928 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.101 0.899 41 H 0.107 0.893 42 H 0.126 0.874 43 H 0.269 0.731 44 H 0.113 0.887 45 H 0.073 0.927 46 H 0.087 0.913 47 H 0.077 0.923 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.827 -21.783 5.921 27.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.188 4.188 3 C 0.094 3.906 4 O -0.360 6.360 5 C -0.157 4.157 6 C -0.006 4.006 7 N -0.355 5.355 8 C 0.304 3.696 9 O -0.393 6.393 10 C -0.132 4.132 11 C -0.033 4.033 12 C -0.215 4.215 13 C -0.093 4.093 14 C -0.250 4.250 15 C 0.101 3.899 16 O -0.084 6.084 17 C -0.466 4.466 18 H 0.109 0.891 19 C -0.166 4.166 20 N -0.500 5.500 21 Si 0.765 3.235 22 H -0.200 1.200 23 H -0.203 1.203 24 H -0.192 1.192 25 C -0.193 4.193 26 C -0.011 4.011 27 C -0.202 4.202 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.220 0.780 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.110 0.890 37 H 0.091 0.909 38 H 0.116 0.884 39 H 0.114 0.886 40 H 0.120 0.880 41 H 0.125 0.875 42 H 0.144 0.856 43 H 0.079 0.921 44 H 0.131 0.869 45 H 0.092 0.908 46 H 0.105 0.895 47 H 0.096 0.904 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -14.499 -21.319 6.281 26.536 hybrid contribution -0.029 0.125 -0.621 0.634 sum -14.528 -21.193 5.660 26.311 Atomic orbital electron populations 1.21874 0.95584 1.02278 1.01913 1.22213 0.96491 0.97048 1.03094 1.21159 0.94917 0.90583 0.83941 1.86584 1.28161 1.81144 1.40102 1.21914 0.92940 0.97896 1.02942 1.21439 0.98253 0.89893 0.91026 1.48128 1.06479 1.49957 1.30919 1.20760 0.88016 0.79066 0.81737 1.90748 1.13835 1.61833 1.72874 1.20619 0.97866 0.99223 0.95492 1.18678 0.96738 0.93374 0.94550 1.20327 1.03637 0.99666 0.97901 1.20669 0.96138 0.94407 0.98118 1.21169 1.06510 0.97008 1.00344 1.19273 0.92553 0.85751 0.92296 1.83976 1.48903 1.23063 1.52447 1.21311 1.13683 1.03637 1.07989 0.89145 1.25275 0.98472 0.95801 0.97060 1.70044 1.41057 1.14191 1.24708 0.85720 0.79673 0.79121 0.78952 1.19953 1.20312 1.19231 1.19942 1.02799 0.95494 1.01042 1.21726 0.80061 0.96301 1.03054 1.22765 1.01100 0.96659 0.99684 0.92611 0.92049 0.92360 0.91014 0.91031 0.77990 0.90332 0.90194 0.89040 0.90939 0.88389 0.88590 0.88048 0.87519 0.85637 0.92138 0.86869 0.90839 0.89492 0.90429 0.90091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.63 9.21 37.16 0.34 -0.29 16 2 C -0.15 -0.81 5.23 -26.73 -0.14 -0.95 16 3 C 0.13 0.90 0.73 -90.57 -0.07 0.84 16 4 O -0.55 -4.02 11.69 -35.23 -0.41 -4.43 16 5 C -0.12 -1.02 5.11 -26.61 -0.14 -1.15 16 6 C 0.12 1.33 6.19 -3.71 -0.02 1.31 16 7 N -0.62 -7.33 2.97 -172.50 -0.51 -7.84 16 8 C 0.52 8.05 7.69 -10.99 -0.08 7.96 16 9 O -0.52 -10.65 15.45 5.56 0.09 -10.57 16 10 C -0.09 -1.30 4.17 -29.04 -0.12 -1.42 16 11 C -0.03 -0.62 4.37 -104.65 -0.46 -1.08 16 12 C -0.20 -3.66 9.70 -39.54 -0.38 -4.04 16 13 C -0.08 -1.48 10.04 -39.61 -0.40 -1.88 16 14 C -0.23 -5.35 9.17 -39.39 -0.36 -5.71 16 15 C 0.15 3.97 6.65 -39.10 -0.26 3.71 16 16 O -0.18 -5.37 9.76 0.05 0.00 -5.37 16 17 C -0.39 -11.32 9.49 30.89 0.29 -11.03 16 18 H 0.09 2.44 5.20 -52.49 -0.27 2.16 16 19 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 20 N -0.86 -26.13 13.67 55.48 0.76 -25.38 16 21 Si 0.94 21.22 29.55 -169.99 -5.02 16.20 16 22 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 23 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 24 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 25 C -0.17 -3.93 9.65 -39.39 -0.38 -4.31 16 26 C 0.11 0.91 6.13 -3.48 -0.02 0.88 16 27 C -0.16 -1.00 4.65 -26.39 -0.12 -1.12 16 28 H 0.05 0.18 6.89 -51.93 -0.36 -0.18 16 29 H 0.06 0.22 6.31 -51.93 -0.33 -0.10 16 30 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.37 1.51 7.53 45.56 0.34 1.85 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.09 1.23 7.01 -51.93 -0.36 0.87 16 37 H 0.07 0.84 7.81 -51.93 -0.41 0.44 16 38 H 0.10 1.20 7.88 -51.93 -0.41 0.79 16 39 H 0.10 1.04 7.64 -51.93 -0.40 0.64 16 40 H 0.10 1.60 8.06 -52.49 -0.42 1.17 16 41 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 42 H 0.13 2.88 5.64 -52.48 -0.30 2.58 16 43 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 44 H 0.11 2.50 8.06 -52.49 -0.42 2.08 16 45 H 0.07 0.58 7.81 -51.93 -0.41 0.17 16 46 H 0.09 0.60 5.93 -51.93 -0.31 0.29 16 47 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 48 H 0.08 0.34 6.27 -51.93 -0.33 0.01 16 LS Contribution 381.32 15.07 5.75 5.75 Total: -1.00 -35.92 381.32 -8.24 -44.16 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -6.47 Total: 4.79 kcal Atomic # 6 Polarization: -14.89 SS G_CDS: -2.42 Total: -17.30 kcal Atomic # 7 Polarization: -33.47 SS G_CDS: 0.25 Total: -33.22 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: -0.33 Total: -20.37 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.92 -8.24 -44.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760633120.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.905 kcal (2) G-P(sol) polarization free energy of solvation -35.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds