Wall clock time and date at job start Tue Mar 31 2020 18:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46760 * 2 1 4 4 O 1.42899 * 109.44857 * 65.03760 * 3 2 1 5 5 C 1.53049 * 109.45666 * 185.00294 * 3 2 1 6 6 C 1.53195 * 109.30819 * 181.38788 * 5 3 2 7 7 N 1.46925 * 108.77601 * 305.36158 * 6 5 3 8 8 C 1.34781 * 120.63460 * 233.58864 * 7 6 5 9 9 O 1.21279 * 119.99460 * 0.02562 * 8 7 6 10 10 C 1.50694 * 120.00176 * 180.02562 * 8 7 6 11 11 C 1.50698 * 109.47229 * 180.02562 * 10 8 7 12 12 C 1.38317 * 119.96857 * 89.99420 * 11 10 8 13 13 C 1.38281 * 120.14162 * 179.74759 * 12 11 10 14 14 C 1.38120 * 120.06679 * 0.25682 * 13 12 11 15 15 C 1.38861 * 119.93162 * 0.02562 * 14 13 12 16 16 O 1.35753 * 120.06897 * 180.02562 * 15 14 13 17 17 C 1.34827 * 116.99898 * 354.46351 * 16 15 14 18 18 H 1.07999 * 120.00241 * 5.05726 * 17 16 15 19 19 C 1.38655 * 119.99607 * 185.06429 * 17 16 15 20 20 N 1.31555 * 120.00189 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99936 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47294 * 89.99553 * 21 19 17 23 23 H 1.48497 * 109.47322 * 209.99425 * 21 19 17 24 24 H 1.48503 * 109.46845 * 329.99371 * 21 19 17 25 25 C 1.38082 * 119.96289 * 270.25705 * 11 10 8 26 26 C 1.46930 * 118.73620 * 53.86436 * 7 6 5 27 27 C 1.53037 * 109.46116 * 305.06845 * 3 2 1 28 28 H 1.09000 * 109.47023 * 299.99402 * 1 2 3 29 29 H 1.08997 * 109.47618 * 60.00054 * 1 2 3 30 30 H 1.09001 * 109.46675 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47023 * 240.00598 * 2 1 3 32 32 H 1.08997 * 109.47618 * 119.99946 * 2 1 3 33 33 H 0.96699 * 113.99876 * 299.96713 * 4 3 2 34 34 H 1.08996 * 109.49551 * 61.43713 * 5 3 2 35 35 H 1.08999 * 109.49610 * 301.33619 * 5 3 2 36 36 H 1.09000 * 109.58199 * 185.57932 * 6 5 3 37 37 H 1.08996 * 109.58949 * 65.15041 * 6 5 3 38 38 H 1.09003 * 109.47374 * 59.99685 * 10 8 7 39 39 H 1.09003 * 109.47330 * 300.00070 * 10 8 7 40 40 H 1.08001 * 119.93129 * 0.02995 * 12 11 10 41 41 H 1.07998 * 119.97092 * 180.27901 * 13 12 11 42 42 H 1.08004 * 120.03647 * 179.97438 * 14 13 12 43 43 H 0.97002 * 119.99797 * 180.02562 * 20 19 17 44 44 H 1.08001 * 120.03832 * 359.97438 * 25 11 10 45 45 H 1.09001 * 109.58876 * 65.92720 * 26 7 6 46 46 H 1.09003 * 109.58709 * 186.35310 * 26 7 6 47 47 H 1.09003 * 109.49824 * 298.56614 * 27 3 2 48 48 H 1.09002 * 109.49758 * 58.66710 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 1.6623 2.0807 1.2216 5 6 3.5652 1.4441 -0.1258 6 6 4.0749 2.8884 -0.0906 7 7 3.3828 3.6597 -1.1321 8 6 4.0820 4.3610 -2.0463 9 8 5.2944 4.3589 -2.0145 10 6 3.3575 5.1476 -3.1080 11 6 4.3615 5.8348 -3.9972 12 6 4.8388 5.1926 -5.1254 13 6 5.7563 5.8219 -5.9467 14 6 6.2029 7.0923 -5.6395 15 6 5.7301 7.7373 -4.5043 16 8 6.1669 8.9861 -4.2000 17 6 7.1437 9.4987 -4.9751 18 1 7.4857 8.9548 -5.8432 19 6 7.7093 10.7242 -4.6576 20 7 7.2925 11.3869 -3.6003 21 14 9.0622 11.4349 -5.7319 22 1 8.4582 12.2705 -6.8005 23 1 9.9661 12.2707 -4.9015 24 1 9.8379 10.3283 -6.3476 25 6 4.8082 7.1027 -3.6817 26 6 1.9136 3.6569 -1.1543 27 6 1.4282 2.1996 -1.1810 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 0.7071 2.1159 1.3680 34 1 3.8529 0.9797 -1.0690 35 1 3.9992 0.8848 0.7030 36 1 5.1485 2.9016 -0.2789 37 1 3.8677 3.3253 0.8862 38 1 2.7193 5.8942 -2.6351 39 1 2.7451 4.4726 -3.7060 40 1 4.4908 4.1994 -5.3680 41 1 6.1237 5.3197 -6.8294 42 1 6.9198 7.5831 -6.2810 43 1 7.6880 12.2444 -3.3785 44 1 4.4381 7.6021 -2.7985 45 1 1.5337 4.1552 -0.2625 46 1 1.5607 4.1774 -2.0446 47 1 1.7361 1.7280 -2.1142 48 1 0.3412 2.1781 -1.1032 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760633120.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:48 Heat of formation + Delta-G solvation = -119.178198 kcal Electronic energy + Delta-G solvation = -28560.296011 eV Core-core repulsion = 24579.526145 eV Total energy + Delta-G solvation = -3980.769867 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.54915 -40.72096 -39.74101 -38.18589 -36.55080 -34.36077 -33.99079 -33.66577 -32.29218 -31.20903 -30.85202 -28.63843 -27.30108 -26.21874 -24.44627 -23.45425 -23.16568 -22.36721 -21.26696 -20.14574 -19.40525 -18.73688 -18.24238 -17.47246 -16.89079 -16.80641 -16.62929 -16.15651 -16.09671 -15.78801 -15.50759 -15.46115 -15.21522 -15.02156 -14.63477 -14.57191 -14.31669 -14.03499 -13.61418 -13.57361 -13.47443 -13.07865 -12.98739 -12.86585 -12.75299 -12.57182 -12.50409 -12.32411 -12.24078 -12.21869 -12.11319 -12.05062 -11.81373 -11.21971 -11.18300 -10.91414 -10.79509 -10.65296 -9.63832 -9.61084 -8.97894 -8.47273 -6.15842 0.51625 0.75573 1.33182 1.43395 1.51559 1.64453 2.03253 2.17600 2.83232 3.14541 3.33296 3.44260 3.64148 3.68331 3.80312 3.87687 3.96888 4.09815 4.10584 4.30239 4.33460 4.34880 4.39953 4.49491 4.53477 4.56171 4.58456 4.61438 4.65827 4.73314 4.81774 4.87628 4.98430 5.02026 5.06672 5.08122 5.12652 5.17992 5.20101 5.30233 5.37683 5.48485 5.59898 5.64983 5.72511 5.75077 6.02581 6.22505 6.42763 6.94390 6.97139 7.21428 7.78971 8.76395 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.027743 B = 0.002162 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.024848 B =12950.370621 C =13310.152068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.146 4.146 3 C 0.137 3.863 4 O -0.570 6.570 5 C -0.115 4.115 6 C 0.114 3.886 7 N -0.609 5.609 8 C 0.512 3.488 9 O -0.583 6.583 10 C -0.088 4.088 11 C -0.025 4.025 12 C -0.180 4.180 13 C -0.073 4.073 14 C -0.246 4.246 15 C 0.111 3.889 16 O -0.235 6.235 17 C -0.414 4.414 18 H 0.101 0.899 19 C -0.026 4.026 20 N -0.922 5.922 21 Si 1.021 2.979 22 H -0.259 1.259 23 H -0.271 1.271 24 H -0.255 1.255 25 C -0.193 4.193 26 C 0.101 3.899 27 C -0.157 4.157 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.387 0.613 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.119 0.881 39 H 0.144 0.856 40 H 0.147 0.853 41 H 0.146 0.854 42 H 0.118 0.882 43 H 0.272 0.728 44 H 0.104 0.896 45 H 0.078 0.922 46 H 0.107 0.893 47 H 0.080 0.920 48 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.184 -24.799 4.460 31.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.183 4.183 3 C 0.097 3.903 4 O -0.379 6.379 5 C -0.153 4.153 6 C -0.008 4.008 7 N -0.342 5.342 8 C 0.301 3.699 9 O -0.462 6.462 10 C -0.127 4.127 11 C -0.026 4.026 12 C -0.198 4.198 13 C -0.091 4.091 14 C -0.266 4.266 15 C 0.061 3.939 16 O -0.142 6.142 17 C -0.490 4.490 18 H 0.118 0.882 19 C -0.223 4.223 20 N -0.561 5.561 21 Si 0.840 3.160 22 H -0.184 1.184 23 H -0.196 1.196 24 H -0.178 1.178 25 C -0.212 4.212 26 C -0.020 4.020 27 C -0.195 4.195 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.237 0.763 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.137 0.863 39 H 0.162 0.838 40 H 0.165 0.835 41 H 0.164 0.836 42 H 0.136 0.864 43 H 0.081 0.919 44 H 0.122 0.878 45 H 0.097 0.903 46 H 0.125 0.875 47 H 0.099 0.901 48 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -16.951 -24.408 4.830 30.107 hybrid contribution 0.500 0.747 -0.076 0.902 sum -16.452 -23.661 4.755 29.208 Atomic orbital electron populations 1.21873 0.94201 1.02664 1.02743 1.22142 0.97622 0.95770 1.02813 1.21102 0.93317 0.91672 0.84246 1.86556 1.29740 1.81265 1.40334 1.21883 0.94868 0.95462 1.03130 1.21420 0.96913 0.91924 0.90568 1.48193 1.08221 1.48307 1.29494 1.21013 0.87348 0.79082 0.82454 1.90734 1.16461 1.64290 1.74750 1.20725 0.96851 1.00103 0.95036 1.19195 0.96524 0.91730 0.95156 1.20957 1.01474 1.00954 0.96406 1.21137 0.95612 0.92894 0.99454 1.21298 1.06918 0.98629 0.99720 1.19873 0.94202 0.85504 0.94283 1.83935 1.50566 1.25508 1.54158 1.21829 1.14179 1.04412 1.08579 0.88219 1.26642 1.01150 0.95832 0.98690 1.70196 1.43455 1.15076 1.27353 0.84562 0.75970 0.78479 0.77004 1.18417 1.19571 1.17841 1.20206 1.03014 0.97277 1.00749 1.22099 0.77262 0.98319 1.04331 1.22755 1.02708 0.94731 0.99314 0.91789 0.91169 0.92290 0.90904 0.91810 0.76264 0.90246 0.90002 0.91942 0.91462 0.86329 0.83840 0.83496 0.83586 0.86397 0.91870 0.87827 0.90341 0.87511 0.90114 0.87215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.69 9.21 71.98 0.66 -0.03 16 2 C -0.15 -1.15 5.23 30.60 0.16 -0.99 16 3 C 0.14 1.46 0.73 -10.76 -0.01 1.46 16 4 O -0.57 -6.86 11.69 -148.98 -1.74 -8.61 16 5 C -0.12 -1.83 5.11 30.68 0.16 -1.67 16 6 C 0.11 2.60 6.19 86.36 0.53 3.13 16 7 N -0.61 -13.35 2.97 -818.06 -2.43 -15.78 16 8 C 0.51 15.23 7.69 87.65 0.67 15.91 16 9 O -0.58 -24.26 15.45 -3.03 -0.05 -24.30 16 10 C -0.09 -2.19 4.17 29.10 0.12 -2.06 16 11 C -0.03 -0.92 4.37 -19.88 -0.09 -1.01 16 12 C -0.18 -6.06 9.70 22.30 0.22 -5.84 16 13 C -0.07 -2.72 10.04 22.25 0.22 -2.50 16 14 C -0.25 -11.62 9.17 22.39 0.21 -11.42 16 15 C 0.11 6.01 6.65 22.58 0.15 6.16 16 16 O -0.23 -15.04 9.76 -22.75 -0.22 -15.26 16 17 C -0.41 -25.44 9.49 67.92 0.64 -24.80 16 18 H 0.10 5.65 5.20 -2.91 -0.02 5.63 16 19 C -0.03 -1.56 5.49 84.83 0.47 -1.09 16 20 N -0.92 -58.95 13.67 21.61 0.30 -58.66 16 21 Si 1.02 44.82 29.55 68.60 2.03 46.85 16 22 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 23 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 24 H -0.25 -10.47 7.11 99.48 0.71 -9.76 16 25 C -0.19 -9.03 9.65 22.39 0.22 -8.81 16 26 C 0.10 1.27 6.13 86.51 0.53 1.80 16 27 C -0.16 -1.27 4.65 30.82 0.14 -1.12 16 28 H 0.06 0.18 6.89 -2.39 -0.02 0.17 16 29 H 0.07 0.20 6.31 -2.39 -0.02 0.18 16 30 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.39 1.90 7.53 -74.06 -0.56 1.34 16 34 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.06 1.78 7.01 -2.39 -0.02 1.76 16 37 H 0.07 1.58 7.81 -2.39 -0.02 1.56 16 38 H 0.12 2.51 7.88 -2.39 -0.02 2.49 16 39 H 0.14 2.23 7.64 -2.39 -0.02 2.22 16 40 H 0.15 3.71 8.06 -2.91 -0.02 3.69 16 41 H 0.15 4.26 8.06 -2.91 -0.02 4.23 16 42 H 0.12 5.60 5.64 -2.91 -0.02 5.58 16 43 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 44 H 0.10 4.87 8.06 -2.91 -0.02 4.85 16 45 H 0.08 0.97 7.81 -2.39 -0.02 0.95 16 46 H 0.11 0.94 5.93 -2.39 -0.01 0.93 16 47 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 48 H 0.11 0.33 6.27 -2.39 -0.01 0.31 16 Total: -1.00 -86.88 381.32 3.32 -83.56 By element: Atomic # 1 Polarization: 24.66 SS G_CDS: 0.42 Total: 25.08 kcal Atomic # 6 Polarization: -37.88 SS G_CDS: 5.01 Total: -32.87 kcal Atomic # 7 Polarization: -72.31 SS G_CDS: -2.13 Total: -74.44 kcal Atomic # 8 Polarization: -46.16 SS G_CDS: -2.01 Total: -48.17 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -86.88 3.32 -83.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760633120.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.620 kcal (2) G-P(sol) polarization free energy of solvation -86.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds