Wall clock time and date at job start Tue Mar 31 2020 19:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47406 * 2 1 4 4 C 1.52992 * 109.47357 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47265 * 180.02562 * 4 3 2 6 6 H 1.09007 * 109.46962 * 304.99564 * 5 4 3 7 7 N 1.46497 * 109.47627 * 64.99692 * 5 4 3 8 8 C 1.34775 * 120.00021 * 205.00329 * 7 5 4 9 9 O 1.21280 * 120.00305 * 359.97438 * 8 7 5 10 10 C 1.50696 * 119.99817 * 179.97438 * 8 7 5 11 11 C 1.50700 * 109.47201 * 179.97438 * 10 8 7 12 12 C 1.37638 * 120.12724 * 264.99938 * 11 10 8 13 13 C 1.38614 * 120.24781 * 179.97438 * 12 11 10 14 14 C 1.38654 * 120.50311 * 0.02686 * 13 12 11 15 15 C 1.37604 * 120.24874 * 0.02562 * 14 13 12 16 16 C 1.40699 * 120.12575 * 84.72748 * 11 10 8 17 17 C 1.41392 * 120.24543 * 359.97438 * 16 11 10 18 18 H 1.08001 * 120.00163 * 329.69652 * 17 16 11 19 19 C 1.39946 * 119.99890 * 149.70478 * 17 16 11 20 20 N 1.30823 * 119.99760 * 162.01335 * 19 17 16 21 21 Si 1.86793 * 120.00299 * 342.00885 * 19 17 16 22 22 H 1.48500 * 109.47186 * 95.40246 * 21 19 17 23 23 H 1.48494 * 109.47706 * 215.40290 * 21 19 17 24 24 H 1.48503 * 109.47250 * 335.40935 * 21 19 17 25 25 C 1.50697 * 109.47132 * 184.99824 * 5 4 3 26 26 O 1.20826 * 120.00386 * 239.99508 * 25 5 4 27 27 O 1.34231 * 119.99915 * 59.99985 * 25 5 4 28 28 C 1.45201 * 117.00110 * 180.02562 * 27 25 5 29 29 H 1.09006 * 109.46730 * 299.99993 * 1 2 3 30 30 H 1.08998 * 109.47412 * 59.99732 * 1 2 3 31 31 H 1.09006 * 109.47413 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46253 * 239.99871 * 2 1 3 33 33 H 1.08997 * 109.46893 * 120.00325 * 2 1 3 34 34 H 1.08997 * 109.47002 * 60.00184 * 3 2 1 35 35 H 1.09007 * 109.47213 * 300.00536 * 3 2 1 36 36 H 1.08997 * 109.47321 * 59.99881 * 4 3 2 37 37 H 1.08998 * 109.47030 * 300.00004 * 4 3 2 38 38 H 0.97001 * 119.99591 * 24.99357 * 7 5 4 39 39 H 1.09007 * 109.47690 * 299.99853 * 10 8 7 40 40 H 1.09000 * 109.47231 * 59.99894 * 10 8 7 41 41 H 1.07997 * 119.87747 * 0.02562 * 12 11 10 42 42 H 1.08000 * 119.74863 * 180.02562 * 13 12 11 43 43 H 1.07995 * 119.87807 * 179.97438 * 14 13 12 44 44 H 1.07995 * 120.12965 * 179.97438 * 15 14 13 45 45 H 0.97005 * 119.99881 * 179.97438 * 20 19 17 46 46 H 1.09007 * 109.46686 * 299.99597 * 28 27 25 47 47 H 1.09001 * 109.47517 * 59.98958 * 28 27 25 48 48 H 1.08993 * 109.47546 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0801 2.8849 0.0000 6 1 3.6451 3.4244 -0.8414 7 7 3.6931 3.5393 1.2523 8 6 3.5663 4.8801 1.3007 9 8 3.7730 5.5452 0.3078 10 6 3.1676 5.5532 2.5888 11 6 3.0980 7.0435 2.3763 12 6 4.1811 7.8361 2.6812 13 6 4.1200 9.2071 2.4862 14 6 2.9698 9.7959 1.9833 15 6 1.8745 9.0231 1.6725 16 6 1.9276 7.6293 1.8600 17 6 0.8109 6.8242 1.5372 18 1 0.9562 5.8050 1.2110 19 6 -0.4826 7.3483 1.6401 20 7 -1.4772 6.7605 1.0263 21 14 -0.7891 8.8869 2.6540 22 1 -0.7689 10.0770 1.7660 23 1 -2.1138 8.7869 3.3175 24 1 0.2719 9.0203 3.6844 25 6 5.5819 2.8867 -0.1244 26 8 6.2595 3.3836 0.7438 27 8 6.1669 2.3364 -1.1999 28 6 7.6175 2.3736 -1.2527 29 1 -0.3633 0.5139 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8932 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.6768 1.9562 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 3.9330 0.9287 -0.8908 37 1 3.9337 0.9284 0.8891 38 1 3.5279 3.0074 2.0465 39 1 2.1914 5.1849 2.9043 40 1 3.9062 5.3305 3.3589 41 1 5.0823 7.3882 3.0731 42 1 4.9748 9.8214 2.7279 43 1 2.9331 10.8651 1.8358 44 1 0.9795 9.4838 1.2813 45 1 -2.3739 7.1235 1.0980 46 1 7.9552 3.4099 -1.2337 47 1 8.0262 1.8426 -0.3930 48 1 7.9601 1.8963 -2.1707 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760675195.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:03 Heat of formation + Delta-G solvation = -125.041310 kcal Electronic energy + Delta-G solvation = -29183.518654 eV Core-core repulsion = 25202.494544 eV Total energy + Delta-G solvation = -3981.024110 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -40.69766 -39.18439 -37.69727 -36.54153 -36.26313 -34.03723 -33.54120 -31.98724 -30.85074 -30.25407 -28.40177 -27.25982 -26.07183 -24.72758 -22.98484 -21.51289 -21.10342 -21.06971 -20.33760 -19.39718 -17.67790 -17.30252 -16.97803 -16.61692 -16.18045 -15.91205 -15.58225 -15.08171 -14.75320 -14.28120 -14.11442 -13.73747 -13.62958 -13.55125 -13.26149 -13.19665 -13.07350 -12.64773 -12.61121 -12.18180 -12.10973 -11.88211 -11.75464 -11.38425 -11.31682 -11.29751 -11.11748 -10.98786 -10.83630 -10.76265 -10.68331 -10.62923 -10.39052 -10.20551 -9.66219 -9.52014 -9.26652 -9.08010 -8.91624 -7.54030 -7.45141 -6.89507 -4.42968 2.23308 2.48532 2.64159 2.77515 3.16049 3.23178 3.35774 3.37661 3.59076 4.02997 4.41094 4.56847 4.71912 4.81196 4.98684 5.00254 5.07445 5.11007 5.15468 5.30943 5.40347 5.45114 5.60298 5.61667 5.70239 5.77546 5.80267 5.88921 5.92975 6.03213 6.12785 6.15705 6.19216 6.24900 6.30893 6.32674 6.33881 6.57887 6.64069 6.78121 7.00629 7.26072 7.47931 7.71790 7.76566 7.78863 7.85780 7.96293 8.19952 8.40575 8.73504 8.79489 8.87554 10.12584 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010054 B = 0.004104 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2784.382949 B = 6820.560047 C = 9119.178119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.121 4.121 3 C -0.122 4.122 4 C -0.118 4.118 5 C 0.159 3.841 6 H 0.126 0.874 7 N -0.721 5.721 8 C 0.525 3.475 9 O -0.516 6.516 10 C -0.072 4.072 11 C -0.167 4.167 12 C -0.068 4.068 13 C -0.242 4.242 14 C -0.080 4.080 15 C -0.234 4.234 16 C 0.110 3.890 17 C -0.444 4.444 18 H 0.089 0.911 19 C 0.086 3.914 20 N -0.810 5.810 21 Si 0.908 3.092 22 H -0.272 1.272 23 H -0.293 1.293 24 H -0.244 1.244 25 C 0.448 3.552 26 O -0.496 6.496 27 O -0.361 6.361 28 C 0.036 3.964 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.050 0.950 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.072 0.928 38 H 0.403 0.597 39 H 0.102 0.898 40 H 0.081 0.919 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.099 0.901 45 H 0.283 0.717 46 H 0.062 0.938 47 H 0.060 0.940 48 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.405 -14.025 -0.873 15.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.159 4.159 3 C -0.159 4.159 4 C -0.156 4.156 5 C 0.051 3.949 6 H 0.144 0.856 7 N -0.377 5.377 8 C 0.313 3.687 9 O -0.389 6.389 10 C -0.111 4.111 11 C -0.168 4.168 12 C -0.086 4.086 13 C -0.261 4.261 14 C -0.099 4.099 15 C -0.253 4.253 16 C 0.107 3.893 17 C -0.473 4.473 18 H 0.107 0.893 19 C -0.133 4.133 20 N -0.435 5.435 21 Si 0.735 3.265 22 H -0.198 1.198 23 H -0.220 1.220 24 H -0.167 1.167 25 C 0.288 3.712 26 O -0.381 6.381 27 O -0.277 6.277 28 C -0.058 4.058 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.107 0.893 37 H 0.091 0.909 38 H 0.237 0.763 39 H 0.120 0.880 40 H 0.099 0.901 41 H 0.109 0.891 42 H 0.110 0.890 43 H 0.110 0.890 44 H 0.117 0.883 45 H 0.093 0.907 46 H 0.081 0.919 47 H 0.079 0.921 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 7.519 -13.430 -1.432 15.458 hybrid contribution 0.000 0.529 0.637 0.828 sum 7.519 -12.900 -0.796 14.953 Atomic orbital electron populations 1.21780 0.95654 1.01309 1.02455 1.21497 0.96142 0.96504 1.01726 1.21647 0.93309 0.97171 1.03802 1.21837 0.97338 0.92563 1.03893 1.20412 0.86195 0.96494 0.91761 0.85603 1.45909 1.71939 1.07883 1.11921 1.21193 0.75174 0.80663 0.91686 1.90692 1.47916 1.63594 1.36735 1.20274 1.02880 0.94523 0.93460 1.19060 0.96568 0.91862 1.09335 1.20457 0.95888 0.93727 0.98561 1.20333 0.98329 0.94494 1.12936 1.20597 0.93869 0.97461 0.97931 1.20997 0.98544 0.94742 1.10998 1.17483 0.92507 0.91390 0.87912 1.19394 0.88947 1.00710 1.38229 0.89268 1.26127 0.95924 0.97709 0.93497 1.69705 1.01758 1.39270 1.32726 0.86364 0.77526 0.81059 0.81533 1.19814 1.22036 1.16706 1.24648 0.92921 0.74382 0.79267 1.90658 1.65461 1.41305 1.40715 1.86501 1.23757 1.73140 1.44284 1.23227 0.76805 1.02864 1.02949 0.92418 0.92521 0.93043 0.92131 0.92181 0.90879 0.91100 0.89267 0.90946 0.76264 0.87987 0.90107 0.89082 0.89042 0.89037 0.88338 0.90657 0.91939 0.92135 0.88226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.91 37.16 0.37 -1.07 16 2 C -0.12 -1.04 5.93 -26.73 -0.16 -1.20 16 3 C -0.12 -1.24 5.10 -26.74 -0.14 -1.37 16 4 C -0.12 -1.14 4.72 -26.73 -0.13 -1.27 16 5 C 0.16 2.18 2.48 -69.09 -0.17 2.01 16 6 H 0.13 1.93 7.58 -51.93 -0.39 1.53 16 7 N -0.72 -10.78 4.06 -54.93 -0.22 -11.01 16 8 C 0.52 10.40 7.25 -10.99 -0.08 10.32 16 9 O -0.52 -12.58 15.70 5.56 0.09 -12.49 16 10 C -0.07 -1.40 5.19 -29.04 -0.15 -1.55 16 11 C -0.17 -3.92 4.43 -103.91 -0.46 -4.38 16 12 C -0.07 -1.53 9.66 -39.66 -0.38 -1.91 16 13 C -0.24 -5.39 10.05 -39.29 -0.39 -5.78 16 14 C -0.08 -1.85 10.02 -39.66 -0.40 -2.25 16 15 C -0.23 -5.92 7.17 -38.87 -0.28 -6.19 16 16 C 0.11 2.85 5.10 -106.82 -0.54 2.30 16 17 C -0.44 -11.87 8.56 -37.74 -0.32 -12.19 16 18 H 0.09 2.47 6.99 -52.49 -0.37 2.11 16 19 C 0.09 2.24 5.41 -17.34 -0.09 2.14 16 20 N -0.81 -21.40 13.93 55.55 0.77 -20.62 16 21 Si 0.91 20.94 24.52 -169.99 -4.17 16.77 16 22 H -0.27 -6.20 6.71 56.52 0.38 -5.82 16 23 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.24 -5.74 6.85 56.52 0.39 -5.36 16 25 C 0.45 6.72 7.29 36.00 0.26 6.98 16 26 O -0.50 -8.91 16.07 -18.75 -0.30 -9.21 16 27 O -0.36 -4.62 10.37 -39.26 -0.41 -5.03 16 28 C 0.04 0.35 10.56 101.05 1.07 1.42 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.82 7.75 -51.93 -0.40 0.42 16 35 H 0.07 0.80 8.14 -51.92 -0.42 0.38 16 36 H 0.09 0.76 8.00 -51.93 -0.42 0.35 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.40 4.74 8.60 -40.82 -0.35 4.39 16 39 H 0.10 1.92 7.15 -51.92 -0.37 1.54 16 40 H 0.08 1.33 8.05 -51.93 -0.42 0.91 16 41 H 0.09 1.83 8.06 -52.49 -0.42 1.40 16 42 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 43 H 0.09 1.85 8.06 -52.49 -0.42 1.42 16 44 H 0.10 2.48 4.74 -52.49 -0.25 2.23 16 45 H 0.28 6.82 8.30 -40.82 -0.34 6.48 16 46 H 0.06 0.68 8.13 -51.92 -0.42 0.25 16 47 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 48 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 396.89 15.07 5.98 5.98 Total: -1.00 -33.23 396.89 -7.89 -41.13 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -7.63 Total: 8.48 kcal Atomic # 6 Polarization: -11.99 SS G_CDS: -2.00 Total: -13.99 kcal Atomic # 7 Polarization: -32.18 SS G_CDS: 0.55 Total: -31.63 kcal Atomic # 8 Polarization: -26.11 SS G_CDS: -0.62 Total: -26.73 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.17 Total: 16.77 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.23 -7.89 -41.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760675195.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.916 kcal (2) G-P(sol) polarization free energy of solvation -33.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds