Wall clock time and date at job start Tue Mar 31 2020 19:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47406 * 2 1 4 4 C 1.52992 * 109.47357 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47265 * 180.02562 * 4 3 2 6 6 H 1.09007 * 109.46962 * 304.99564 * 5 4 3 7 7 N 1.46497 * 109.47627 * 64.99692 * 5 4 3 8 8 C 1.34775 * 120.00021 * 205.00329 * 7 5 4 9 9 O 1.21280 * 120.00305 * 359.97438 * 8 7 5 10 10 C 1.50696 * 119.99817 * 179.97438 * 8 7 5 11 11 C 1.50700 * 109.47201 * 179.97438 * 10 8 7 12 12 C 1.37638 * 120.12724 * 264.99938 * 11 10 8 13 13 C 1.38614 * 120.24781 * 179.97438 * 12 11 10 14 14 C 1.38654 * 120.50311 * 0.02686 * 13 12 11 15 15 C 1.37604 * 120.24874 * 0.02562 * 14 13 12 16 16 C 1.40699 * 120.12575 * 84.72748 * 11 10 8 17 17 C 1.41392 * 120.24543 * 359.97438 * 16 11 10 18 18 H 1.08001 * 120.00163 * 329.69652 * 17 16 11 19 19 C 1.39946 * 119.99890 * 149.70478 * 17 16 11 20 20 N 1.30823 * 119.99760 * 162.01335 * 19 17 16 21 21 Si 1.86793 * 120.00299 * 342.00885 * 19 17 16 22 22 H 1.48500 * 109.47186 * 95.40246 * 21 19 17 23 23 H 1.48494 * 109.47706 * 215.40290 * 21 19 17 24 24 H 1.48503 * 109.47250 * 335.40935 * 21 19 17 25 25 C 1.50697 * 109.47132 * 184.99824 * 5 4 3 26 26 O 1.20826 * 120.00386 * 239.99508 * 25 5 4 27 27 O 1.34231 * 119.99915 * 59.99985 * 25 5 4 28 28 C 1.45201 * 117.00110 * 180.02562 * 27 25 5 29 29 H 1.09006 * 109.46730 * 299.99993 * 1 2 3 30 30 H 1.08998 * 109.47412 * 59.99732 * 1 2 3 31 31 H 1.09006 * 109.47413 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46253 * 239.99871 * 2 1 3 33 33 H 1.08997 * 109.46893 * 120.00325 * 2 1 3 34 34 H 1.08997 * 109.47002 * 60.00184 * 3 2 1 35 35 H 1.09007 * 109.47213 * 300.00536 * 3 2 1 36 36 H 1.08997 * 109.47321 * 59.99881 * 4 3 2 37 37 H 1.08998 * 109.47030 * 300.00004 * 4 3 2 38 38 H 0.97001 * 119.99591 * 24.99357 * 7 5 4 39 39 H 1.09007 * 109.47690 * 299.99853 * 10 8 7 40 40 H 1.09000 * 109.47231 * 59.99894 * 10 8 7 41 41 H 1.07997 * 119.87747 * 0.02562 * 12 11 10 42 42 H 1.08000 * 119.74863 * 180.02562 * 13 12 11 43 43 H 1.07995 * 119.87807 * 179.97438 * 14 13 12 44 44 H 1.07995 * 120.12965 * 179.97438 * 15 14 13 45 45 H 0.97005 * 119.99881 * 179.97438 * 20 19 17 46 46 H 1.09007 * 109.46686 * 299.99597 * 28 27 25 47 47 H 1.09001 * 109.47517 * 59.98958 * 28 27 25 48 48 H 1.08993 * 109.47546 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0801 2.8849 0.0000 6 1 3.6451 3.4244 -0.8414 7 7 3.6931 3.5393 1.2523 8 6 3.5663 4.8801 1.3007 9 8 3.7730 5.5452 0.3078 10 6 3.1676 5.5532 2.5888 11 6 3.0980 7.0435 2.3763 12 6 4.1811 7.8361 2.6812 13 6 4.1200 9.2071 2.4862 14 6 2.9698 9.7959 1.9833 15 6 1.8745 9.0231 1.6725 16 6 1.9276 7.6293 1.8600 17 6 0.8109 6.8242 1.5372 18 1 0.9562 5.8050 1.2110 19 6 -0.4826 7.3483 1.6401 20 7 -1.4772 6.7605 1.0263 21 14 -0.7891 8.8869 2.6540 22 1 -0.7689 10.0770 1.7660 23 1 -2.1138 8.7869 3.3175 24 1 0.2719 9.0203 3.6844 25 6 5.5819 2.8867 -0.1244 26 8 6.2595 3.3836 0.7438 27 8 6.1669 2.3364 -1.1999 28 6 7.6175 2.3736 -1.2527 29 1 -0.3633 0.5139 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8932 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.6768 1.9562 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 3.9330 0.9287 -0.8908 37 1 3.9337 0.9284 0.8891 38 1 3.5279 3.0074 2.0465 39 1 2.1914 5.1849 2.9043 40 1 3.9062 5.3305 3.3589 41 1 5.0823 7.3882 3.0731 42 1 4.9748 9.8214 2.7279 43 1 2.9331 10.8651 1.8358 44 1 0.9795 9.4838 1.2813 45 1 -2.3739 7.1235 1.0980 46 1 7.9552 3.4099 -1.2337 47 1 8.0262 1.8426 -0.3930 48 1 7.9601 1.8963 -2.1707 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760675195.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:02 Heat of formation + Delta-G solvation = -144.819370 kcal Electronic energy + Delta-G solvation = -29184.376295 eV Core-core repulsion = 25202.494544 eV Total energy + Delta-G solvation = -3981.881751 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.90295 -40.68599 -39.37587 -37.74006 -37.33309 -35.47007 -35.16324 -33.63171 -32.20775 -31.96930 -29.32947 -28.71286 -27.29530 -26.51433 -23.88249 -23.26412 -22.62214 -21.88076 -21.63279 -21.06446 -19.23735 -18.82947 -18.18625 -17.99766 -17.54699 -17.30449 -16.81277 -16.43345 -16.26396 -15.90844 -15.44994 -15.26982 -14.92735 -14.72970 -14.60658 -14.47703 -14.26949 -14.04968 -13.83885 -13.70824 -13.56501 -13.14182 -13.04170 -12.77296 -12.69702 -12.66276 -12.50203 -12.22012 -12.12521 -11.98931 -11.86269 -11.83798 -11.52802 -11.49332 -11.39819 -11.37041 -10.96507 -10.89268 -10.27367 -9.39994 -9.29374 -8.84406 -6.42307 0.79112 0.90242 1.05257 1.29036 1.38277 1.41999 1.50824 1.89256 2.15942 2.31130 2.66473 3.44024 3.55665 3.76024 3.91223 4.04890 4.13058 4.21453 4.27628 4.27984 4.29145 4.35968 4.40451 4.45673 4.56266 4.58681 4.65676 4.72239 4.80002 4.81793 4.93577 4.94695 4.99327 5.06339 5.15140 5.16940 5.23690 5.31987 5.33250 5.38690 5.44348 5.54682 5.67748 5.87390 5.95411 6.06200 6.30375 6.45412 6.52981 6.62307 6.81856 6.92669 7.31649 8.22849 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010054 B = 0.004104 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2784.382949 B = 6820.560047 C = 9119.178119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.115 4.115 3 C -0.121 4.121 4 C -0.104 4.104 5 C 0.156 3.844 6 H 0.105 0.895 7 N -0.704 5.704 8 C 0.525 3.475 9 O -0.571 6.571 10 C -0.073 4.073 11 C -0.173 4.173 12 C -0.081 4.081 13 C -0.233 4.233 14 C -0.091 4.091 15 C -0.257 4.257 16 C 0.086 3.914 17 C -0.467 4.467 18 H 0.062 0.938 19 C 0.052 3.948 20 N -0.847 5.847 21 Si 0.959 3.041 22 H -0.269 1.269 23 H -0.277 1.277 24 H -0.252 1.252 25 C 0.451 3.549 26 O -0.529 6.529 27 O -0.358 6.358 28 C 0.028 3.972 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.057 0.943 35 H 0.052 0.948 36 H 0.108 0.892 37 H 0.094 0.906 38 H 0.419 0.581 39 H 0.103 0.897 40 H 0.115 0.885 41 H 0.119 0.881 42 H 0.125 0.875 43 H 0.121 0.879 44 H 0.092 0.908 45 H 0.291 0.709 46 H 0.049 0.951 47 H 0.068 0.932 48 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.240 -14.918 0.053 17.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.152 4.152 3 C -0.159 4.159 4 C -0.142 4.142 5 C 0.048 3.952 6 H 0.123 0.877 7 N -0.359 5.359 8 C 0.314 3.686 9 O -0.449 6.449 10 C -0.112 4.112 11 C -0.174 4.174 12 C -0.099 4.099 13 C -0.252 4.252 14 C -0.109 4.109 15 C -0.276 4.276 16 C 0.083 3.917 17 C -0.497 4.497 18 H 0.081 0.919 19 C -0.162 4.162 20 N -0.473 5.473 21 Si 0.784 3.216 22 H -0.196 1.196 23 H -0.204 1.204 24 H -0.176 1.176 25 C 0.293 3.707 26 O -0.418 6.418 27 O -0.274 6.274 28 C -0.065 4.065 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.127 0.873 37 H 0.113 0.887 38 H 0.257 0.743 39 H 0.121 0.879 40 H 0.133 0.867 41 H 0.137 0.863 42 H 0.143 0.857 43 H 0.139 0.861 44 H 0.110 0.890 45 H 0.101 0.899 46 H 0.068 0.932 47 H 0.087 0.913 48 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 9.351 -14.384 -0.498 17.164 hybrid contribution -0.357 0.776 0.306 0.907 sum 8.994 -13.608 -0.192 16.313 Atomic orbital electron populations 1.21809 0.96456 1.01916 1.01341 1.21466 0.95386 0.95248 1.03145 1.21619 0.93794 0.98235 1.02231 1.21825 0.96579 0.89844 1.05907 1.20584 0.85952 0.98466 0.90173 0.87714 1.45664 1.70323 1.06600 1.13289 1.21196 0.74526 0.81968 0.90953 1.90662 1.50764 1.65134 1.38313 1.20327 1.04072 0.92478 0.94340 1.19520 0.96003 0.94110 1.07791 1.20871 0.96521 0.94142 0.98383 1.20834 0.98872 0.94891 1.10570 1.20966 0.93378 0.99021 0.97495 1.21155 0.99443 0.94941 1.12082 1.17719 0.93226 0.91937 0.88795 1.19324 0.90107 0.99952 1.40276 0.91944 1.26698 0.95518 0.99923 0.94077 1.69730 1.02380 1.40924 1.34304 0.85582 0.77627 0.78356 0.80075 1.19554 1.20397 1.17590 1.24716 0.93102 0.73685 0.79227 1.90639 1.66222 1.42898 1.42028 1.86489 1.25571 1.72315 1.42987 1.23558 0.74942 1.02698 1.05315 0.93614 0.93630 0.91552 0.90721 0.90633 0.92386 0.92932 0.87319 0.88707 0.74266 0.87858 0.86655 0.86346 0.85676 0.86068 0.89003 0.89882 0.93234 0.91336 0.84491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.85 9.91 71.98 0.71 -2.14 16 2 C -0.12 -1.78 5.93 30.59 0.18 -1.60 16 3 C -0.12 -2.41 5.10 30.59 0.16 -2.25 16 4 C -0.10 -1.83 4.72 30.59 0.14 -1.69 16 5 C 0.16 4.23 2.48 44.24 0.11 4.34 16 6 H 0.11 3.36 7.58 -2.38 -0.02 3.34 16 7 N -0.70 -21.00 4.06 -446.11 -1.81 -22.81 16 8 C 0.52 21.14 7.25 87.66 0.64 21.78 16 9 O -0.57 -28.79 15.70 -3.03 -0.05 -28.84 16 10 C -0.07 -2.82 5.19 29.10 0.15 -2.67 16 11 C -0.17 -8.09 4.43 -19.40 -0.09 -8.17 16 12 C -0.08 -3.49 9.66 22.22 0.21 -3.27 16 13 C -0.23 -9.74 10.05 22.46 0.23 -9.51 16 14 C -0.09 -4.03 10.02 22.22 0.22 -3.80 16 15 C -0.26 -13.03 7.17 22.73 0.16 -12.87 16 16 C 0.09 4.52 5.10 -21.29 -0.11 4.41 16 17 C -0.47 -26.05 8.56 23.46 0.20 -25.85 16 18 H 0.06 3.69 6.99 -2.91 -0.02 3.67 16 19 C 0.05 2.82 5.41 85.26 0.46 3.28 16 20 N -0.85 -46.39 13.93 21.83 0.30 -46.09 16 21 Si 0.96 43.78 24.52 68.60 1.68 45.47 16 22 H -0.27 -12.05 6.71 99.48 0.67 -11.38 16 23 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 24 H -0.25 -11.72 6.85 99.48 0.68 -11.04 16 25 C 0.45 13.20 7.29 71.23 0.52 13.72 16 26 O -0.53 -18.69 16.07 21.97 0.35 -18.34 16 27 O -0.36 -8.64 10.37 -51.43 -0.53 -9.18 16 28 C 0.03 0.50 10.56 113.37 1.20 1.70 16 29 H 0.04 0.92 8.14 -2.38 -0.02 0.90 16 30 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 32 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.06 1.32 7.75 -2.39 -0.02 1.30 16 35 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 36 H 0.11 1.57 8.00 -2.39 -0.02 1.55 16 37 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.42 9.48 8.60 -92.71 -0.80 8.69 16 39 H 0.10 3.96 7.15 -2.38 -0.02 3.94 16 40 H 0.12 3.58 8.05 -2.39 -0.02 3.56 16 41 H 0.12 4.39 8.06 -2.91 -0.02 4.37 16 42 H 0.13 4.36 8.06 -2.91 -0.02 4.34 16 43 H 0.12 4.57 8.06 -2.91 -0.02 4.54 16 44 H 0.09 4.67 4.74 -2.91 -0.01 4.66 16 45 H 0.29 14.42 8.30 -92.70 -0.77 13.65 16 46 H 0.05 1.03 8.13 -2.38 -0.02 1.01 16 47 H 0.07 1.13 8.13 -2.39 -0.02 1.11 16 48 H 0.14 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -74.74 396.89 5.15 -69.60 By element: Atomic # 1 Polarization: 34.68 SS G_CDS: 0.10 Total: 34.78 kcal Atomic # 6 Polarization: -29.69 SS G_CDS: 5.10 Total: -24.59 kcal Atomic # 7 Polarization: -67.39 SS G_CDS: -1.51 Total: -68.89 kcal Atomic # 8 Polarization: -56.13 SS G_CDS: -0.23 Total: -56.35 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 1.68 Total: 45.47 kcal Total: -74.74 5.15 -69.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760675195.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.221 kcal (2) G-P(sol) polarization free energy of solvation -74.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds