Wall clock time and date at job start Tue Mar 31 2020 18:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47300 * 2 1 4 4 N 1.46493 * 109.54011 * 305.35814 * 3 2 1 5 5 C 1.34773 * 120.00347 * 296.16330 * 4 3 2 6 6 O 1.21280 * 119.99723 * 5.21289 * 5 4 3 7 7 C 1.50696 * 120.00372 * 185.21285 * 5 4 3 8 8 C 1.50701 * 109.47506 * 179.97438 * 7 5 4 9 9 C 1.38299 * 119.92865 * 89.99567 * 8 7 5 10 10 C 1.38106 * 120.06521 * 180.02562 * 9 8 7 11 11 C 1.38872 * 119.93304 * 359.97438 * 10 9 8 12 12 O 1.35749 * 120.06849 * 180.02562 * 11 10 9 13 13 C 1.34821 * 117.00138 * 354.19237 * 12 11 10 14 14 H 1.08004 * 120.00289 * 5.07570 * 13 12 11 15 15 C 1.38658 * 120.00434 * 185.07888 * 13 12 11 16 16 N 1.31562 * 119.99417 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 120.00343 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47464 * 90.00291 * 17 15 13 19 19 H 1.48500 * 109.47286 * 210.00057 * 17 15 13 20 20 H 1.48497 * 109.47172 * 330.00001 * 17 15 13 21 21 C 1.38878 * 119.86013 * 0.27448 * 11 10 9 22 22 C 1.38099 * 119.93457 * 359.49266 * 21 11 10 23 23 C 1.53185 * 109.54006 * 65.53426 * 3 2 1 24 24 C 1.53281 * 109.05779 * 176.85085 * 23 3 2 25 25 O 1.42905 * 109.46219 * 302.44547 * 24 23 3 26 26 C 1.42901 * 114.09725 * 61.16176 * 25 24 23 27 27 C 1.53094 * 109.41319 * 298.84062 * 26 25 24 28 28 H 1.09000 * 109.47001 * 64.85842 * 1 2 3 29 29 H 1.08997 * 109.47252 * 184.86036 * 1 2 3 30 30 H 1.09006 * 109.47263 * 304.86210 * 1 2 3 31 31 H 1.08993 * 109.47311 * 239.99455 * 2 1 3 32 32 H 1.09004 * 109.46651 * 120.00210 * 2 1 3 33 33 H 0.97002 * 119.99733 * 116.17428 * 4 3 2 34 34 H 1.09009 * 109.47122 * 59.99931 * 7 5 4 35 35 H 1.08995 * 109.47310 * 300.00283 * 7 5 4 36 36 H 1.07997 * 119.96744 * 0.02562 * 9 8 7 37 37 H 1.08002 * 120.02968 * 179.97438 * 10 9 8 38 38 H 0.97003 * 119.99454 * 179.97438 * 16 15 13 39 39 H 1.08003 * 120.03617 * 179.72512 * 21 11 10 40 40 H 1.07999 * 119.96929 * 180.22655 * 22 21 11 41 41 H 1.08990 * 109.52246 * 296.84152 * 23 3 2 42 42 H 1.09004 * 109.52266 * 57.03399 * 23 3 2 43 43 H 1.08999 * 109.45760 * 182.45147 * 24 23 3 44 44 H 1.08996 * 109.46928 * 62.45048 * 24 23 3 45 45 H 1.08997 * 109.47950 * 178.85989 * 26 25 24 46 46 H 1.09001 * 109.49165 * 58.82636 * 26 25 24 47 47 H 1.09001 * 109.52187 * 297.70008 * 27 26 25 48 48 H 1.09002 * 109.57132 * 177.55033 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.4502 2.1708 -1.1259 5 6 1.7287 1.7970 -2.3905 6 8 2.3903 0.8017 -2.5968 7 6 1.2181 2.6156 -3.5481 8 6 1.6654 1.9882 -4.8432 9 6 0.8701 1.0408 -5.4618 10 6 1.2775 0.4636 -6.6484 11 6 2.4869 0.8358 -7.2207 12 8 2.8898 0.2706 -8.3874 13 6 2.1307 -0.7304 -8.8768 14 1 1.2038 -0.9935 -8.3888 15 6 2.5400 -1.4222 -10.0066 16 7 3.6693 -1.1020 -10.6007 17 14 1.4886 -2.8095 -10.6843 18 1 0.5243 -2.2626 -11.6724 19 1 2.3602 -3.8130 -11.3466 20 1 0.7456 -3.4558 -9.5729 21 6 3.2856 1.7836 -6.5944 22 6 2.8705 2.3608 -5.4104 23 6 1.6472 2.1248 1.3140 24 6 2.2305 3.5421 1.3359 25 8 3.6494 3.4755 1.1794 26 6 4.0736 2.8886 -0.0525 27 6 3.5662 1.4463 -0.1303 28 1 -0.3633 0.4366 -0.9303 29 1 -0.3633 -1.0239 0.0871 30 1 -0.3634 0.5874 0.8433 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 0.8592 2.9222 -0.9613 34 1 1.6147 3.6287 -3.4795 35 1 0.1291 2.6490 -3.5171 36 1 -0.0704 0.7521 -5.0164 37 1 0.6562 -0.2765 -7.1308 38 1 3.9558 -1.5863 -11.3909 39 1 4.2287 2.0720 -7.0347 40 1 3.4895 3.1006 -4.9247 41 1 0.5609 2.1745 1.3880 42 1 2.0448 1.5547 2.1536 43 1 1.9917 4.0184 2.2868 44 1 1.8018 4.1241 0.5201 45 1 5.1625 2.8940 -0.1017 46 1 3.6691 3.4617 -0.8867 47 1 4.0025 0.8624 0.6802 48 1 3.8512 1.0101 -1.0877 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000761936768.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:11 Heat of formation + Delta-G solvation = -92.615603 kcal Electronic energy + Delta-G solvation = -29108.255813 eV Core-core repulsion = 25128.637787 eV Total energy + Delta-G solvation = -3979.618026 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.98409 -39.17688 -38.45793 -36.64128 -35.88341 -32.83131 -32.32459 -31.56061 -31.11438 -30.69768 -30.11374 -26.71420 -25.52481 -25.00205 -24.02138 -21.96470 -21.91751 -21.58912 -20.16745 -19.36417 -17.94727 -17.33767 -16.87747 -16.50751 -16.30036 -15.83570 -15.52491 -14.83976 -14.65650 -14.52865 -14.38049 -14.29630 -13.83433 -13.68391 -13.54305 -13.39701 -13.23290 -12.78369 -12.67441 -12.60111 -12.46937 -12.14484 -11.81132 -11.68672 -11.60752 -11.47147 -11.26608 -11.23553 -10.83901 -10.76852 -10.71561 -10.59471 -10.54962 -10.40519 -9.89742 -9.42352 -9.29191 -9.03797 -8.78777 -8.11629 -7.12794 -6.41597 -4.00108 2.28113 2.29643 2.77972 3.11975 3.15481 3.19139 3.21260 3.60255 3.99724 4.23621 4.46040 4.51640 4.57762 4.69454 4.84371 4.98293 5.07462 5.10083 5.11606 5.19256 5.20767 5.27643 5.32250 5.35262 5.37968 5.43066 5.55535 5.64001 5.68069 5.71924 5.75313 5.76625 5.85560 5.87859 6.00485 6.02505 6.20190 6.25064 6.45228 6.49808 6.73765 6.91318 6.94903 7.08964 7.27346 7.40425 7.47351 7.51249 7.87567 8.03766 8.36129 9.04209 9.75078 10.76618 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021255 B = 0.002461 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.010161 B =11375.687303 C =11904.279296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.134 4.134 3 C 0.182 3.818 4 N -0.733 5.733 5 C 0.512 3.488 6 O -0.512 6.512 7 C -0.082 4.082 8 C -0.168 4.168 9 C -0.056 4.056 10 C -0.232 4.232 11 C 0.157 3.843 12 O -0.179 6.179 13 C -0.390 4.390 14 H 0.091 0.909 15 C 0.038 3.962 16 N -0.864 5.864 17 Si 0.940 3.060 18 H -0.273 1.273 19 H -0.278 1.278 20 H -0.268 1.268 21 C -0.191 4.191 22 C -0.060 4.060 23 C -0.158 4.158 24 C 0.061 3.939 25 O -0.384 6.384 26 C 0.064 3.936 27 C -0.169 4.169 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.087 0.913 32 H 0.064 0.936 33 H 0.395 0.605 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.102 0.898 37 H 0.126 0.874 38 H 0.269 0.731 39 H 0.116 0.884 40 H 0.107 0.893 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.093 0.907 44 H 0.049 0.951 45 H 0.093 0.907 46 H 0.051 0.949 47 H 0.075 0.925 48 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.681 8.750 23.826 26.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.173 4.173 3 C 0.096 3.904 4 N -0.387 5.387 5 C 0.299 3.701 6 O -0.386 6.386 7 C -0.122 4.122 8 C -0.169 4.169 9 C -0.075 4.075 10 C -0.251 4.251 11 C 0.103 3.897 12 O -0.082 6.082 13 C -0.467 4.467 14 H 0.109 0.891 15 C -0.166 4.166 16 N -0.499 5.499 17 Si 0.765 3.235 18 H -0.199 1.199 19 H -0.203 1.203 20 H -0.192 1.192 21 C -0.211 4.211 22 C -0.078 4.078 23 C -0.196 4.196 24 C -0.016 4.016 25 O -0.302 6.302 26 C -0.012 4.012 27 C -0.207 4.207 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.105 0.895 32 H 0.083 0.917 33 H 0.229 0.771 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.120 0.880 37 H 0.143 0.857 38 H 0.079 0.921 39 H 0.134 0.866 40 H 0.125 0.875 41 H 0.100 0.900 42 H 0.104 0.896 43 H 0.111 0.889 44 H 0.068 0.932 45 H 0.111 0.889 46 H 0.069 0.931 47 H 0.094 0.906 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -5.709 8.038 23.436 25.426 hybrid contribution -1.107 -0.541 -0.406 1.297 sum -6.817 7.498 23.030 25.161 Atomic orbital electron populations 1.21713 0.95691 1.01409 1.01492 1.21930 0.96264 0.95531 1.03527 1.20257 0.92737 0.92169 0.85235 1.46232 1.51310 1.35684 1.05490 1.20964 0.80054 0.85684 0.83382 1.90683 1.37895 1.25385 1.84658 1.20428 1.01674 0.98818 0.91232 1.18607 0.97862 1.03723 0.96746 1.20489 0.97890 0.94689 0.94388 1.21100 0.98898 1.06146 0.99000 1.19370 0.91984 0.92029 0.86316 1.83972 1.49126 1.45077 1.30040 1.21320 1.04088 1.10267 1.10995 0.89122 1.25283 0.96772 0.98477 0.96021 1.70046 1.20372 1.39984 1.19476 0.85719 0.78917 0.79644 0.79197 1.19910 1.20265 1.19210 1.20152 1.01021 1.02073 0.97806 1.20379 0.94693 0.98257 0.94460 1.22562 1.01942 0.97683 0.97454 1.22579 0.81851 0.95411 1.01777 1.87930 1.21396 1.81665 1.39247 1.22553 0.99927 0.92672 0.86081 1.22618 0.94836 0.98055 1.05195 0.92703 0.92923 0.93080 0.89458 0.91708 0.77108 0.89179 0.89250 0.87954 0.85663 0.92071 0.86607 0.87504 0.90044 0.89605 0.88874 0.93245 0.88903 0.93086 0.90590 0.88104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.48 37.16 0.35 -0.93 16 2 C -0.13 -1.34 4.74 -26.73 -0.13 -1.47 16 3 C 0.18 1.62 0.35 -131.64 -0.05 1.58 16 4 N -0.73 -6.43 3.28 -47.44 -0.16 -6.59 16 5 C 0.51 6.40 7.20 -10.99 -0.08 6.32 16 6 O -0.51 -8.67 12.34 5.56 0.07 -8.60 16 7 C -0.08 -0.97 5.83 -29.04 -0.17 -1.14 16 8 C -0.17 -2.86 4.38 -104.57 -0.46 -3.32 16 9 C -0.06 -1.06 9.69 -39.61 -0.38 -1.44 16 10 C -0.23 -5.21 9.17 -39.40 -0.36 -5.57 16 11 C 0.16 3.90 6.65 -39.11 -0.26 3.64 16 12 O -0.18 -5.22 9.76 0.08 0.00 -5.22 16 13 C -0.39 -11.15 9.49 30.89 0.29 -10.86 16 14 H 0.09 2.40 5.21 -52.48 -0.27 2.13 16 15 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 16 N -0.86 -25.76 13.67 55.48 0.76 -25.00 16 17 Si 0.94 20.90 29.55 -169.99 -5.02 15.88 16 18 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 19 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 20 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 21 C -0.19 -4.18 9.99 -39.40 -0.39 -4.57 16 22 C -0.06 -1.09 9.69 -39.61 -0.38 -1.47 16 23 C -0.16 -1.04 4.66 -26.49 -0.12 -1.16 16 24 C 0.06 0.42 6.67 37.30 0.25 0.66 16 25 O -0.38 -3.78 10.77 -35.23 -0.38 -4.16 16 26 C 0.06 0.63 6.68 37.21 0.25 0.88 16 27 C -0.17 -1.75 4.71 -26.59 -0.13 -1.88 16 28 H 0.05 0.54 7.62 -51.93 -0.40 0.14 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.36 6.45 -51.93 -0.33 0.02 16 31 H 0.09 1.17 6.44 -51.93 -0.33 0.84 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.39 2.41 7.67 -40.82 -0.31 2.10 16 34 H 0.09 0.87 8.08 -51.92 -0.42 0.45 16 35 H 0.09 0.87 8.08 -51.93 -0.42 0.45 16 36 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 37 H 0.13 2.82 5.64 -52.49 -0.30 2.52 16 38 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 39 H 0.12 2.45 8.06 -52.48 -0.42 2.02 16 40 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 41 H 0.08 0.42 6.64 -51.93 -0.35 0.07 16 42 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.05 0.29 7.18 -51.93 -0.37 -0.08 16 45 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.05 0.50 7.75 -51.93 -0.40 0.10 16 47 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 48 H 0.10 1.34 6.02 -51.93 -0.31 1.03 16 LS Contribution 379.67 15.07 5.72 5.72 Total: -1.00 -33.71 379.67 -8.03 -41.74 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -7.16 Total: 5.98 kcal Atomic # 6 Polarization: -17.89 SS G_CDS: -1.86 Total: -19.75 kcal Atomic # 7 Polarization: -32.19 SS G_CDS: 0.60 Total: -31.59 kcal Atomic # 8 Polarization: -17.67 SS G_CDS: -0.31 Total: -17.98 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.71 -8.03 -41.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761936768.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.878 kcal (2) G-P(sol) polarization free energy of solvation -33.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds