Wall clock time and date at job start Tue Mar 31 2020 18:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47300 * 2 1 4 4 N 1.46493 * 109.54011 * 305.35814 * 3 2 1 5 5 C 1.34773 * 120.00347 * 296.16330 * 4 3 2 6 6 O 1.21280 * 119.99723 * 5.21289 * 5 4 3 7 7 C 1.50696 * 120.00372 * 185.21285 * 5 4 3 8 8 C 1.50701 * 109.47506 * 179.97438 * 7 5 4 9 9 C 1.38299 * 119.92865 * 89.99567 * 8 7 5 10 10 C 1.38106 * 120.06521 * 180.02562 * 9 8 7 11 11 C 1.38872 * 119.93304 * 359.97438 * 10 9 8 12 12 O 1.35749 * 120.06849 * 180.02562 * 11 10 9 13 13 C 1.34821 * 117.00138 * 354.19237 * 12 11 10 14 14 H 1.08004 * 120.00289 * 5.07570 * 13 12 11 15 15 C 1.38658 * 120.00434 * 185.07888 * 13 12 11 16 16 N 1.31562 * 119.99417 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 120.00343 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47464 * 90.00291 * 17 15 13 19 19 H 1.48500 * 109.47286 * 210.00057 * 17 15 13 20 20 H 1.48497 * 109.47172 * 330.00001 * 17 15 13 21 21 C 1.38878 * 119.86013 * 0.27448 * 11 10 9 22 22 C 1.38099 * 119.93457 * 359.49266 * 21 11 10 23 23 C 1.53185 * 109.54006 * 65.53426 * 3 2 1 24 24 C 1.53281 * 109.05779 * 176.85085 * 23 3 2 25 25 O 1.42905 * 109.46219 * 302.44547 * 24 23 3 26 26 C 1.42901 * 114.09725 * 61.16176 * 25 24 23 27 27 C 1.53094 * 109.41319 * 298.84062 * 26 25 24 28 28 H 1.09000 * 109.47001 * 64.85842 * 1 2 3 29 29 H 1.08997 * 109.47252 * 184.86036 * 1 2 3 30 30 H 1.09006 * 109.47263 * 304.86210 * 1 2 3 31 31 H 1.08993 * 109.47311 * 239.99455 * 2 1 3 32 32 H 1.09004 * 109.46651 * 120.00210 * 2 1 3 33 33 H 0.97002 * 119.99733 * 116.17428 * 4 3 2 34 34 H 1.09009 * 109.47122 * 59.99931 * 7 5 4 35 35 H 1.08995 * 109.47310 * 300.00283 * 7 5 4 36 36 H 1.07997 * 119.96744 * 0.02562 * 9 8 7 37 37 H 1.08002 * 120.02968 * 179.97438 * 10 9 8 38 38 H 0.97003 * 119.99454 * 179.97438 * 16 15 13 39 39 H 1.08003 * 120.03617 * 179.72512 * 21 11 10 40 40 H 1.07999 * 119.96929 * 180.22655 * 22 21 11 41 41 H 1.08990 * 109.52246 * 296.84152 * 23 3 2 42 42 H 1.09004 * 109.52266 * 57.03399 * 23 3 2 43 43 H 1.08999 * 109.45760 * 182.45147 * 24 23 3 44 44 H 1.08996 * 109.46928 * 62.45048 * 24 23 3 45 45 H 1.08997 * 109.47950 * 178.85989 * 26 25 24 46 46 H 1.09001 * 109.49165 * 58.82636 * 26 25 24 47 47 H 1.09001 * 109.52187 * 297.70008 * 27 26 25 48 48 H 1.09002 * 109.57132 * 177.55033 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.4502 2.1708 -1.1259 5 6 1.7287 1.7970 -2.3905 6 8 2.3903 0.8017 -2.5968 7 6 1.2181 2.6156 -3.5481 8 6 1.6654 1.9882 -4.8432 9 6 0.8701 1.0408 -5.4618 10 6 1.2775 0.4636 -6.6484 11 6 2.4869 0.8358 -7.2207 12 8 2.8898 0.2706 -8.3874 13 6 2.1307 -0.7304 -8.8768 14 1 1.2038 -0.9935 -8.3888 15 6 2.5400 -1.4222 -10.0066 16 7 3.6693 -1.1020 -10.6007 17 14 1.4886 -2.8095 -10.6843 18 1 0.5243 -2.2626 -11.6724 19 1 2.3602 -3.8130 -11.3466 20 1 0.7456 -3.4558 -9.5729 21 6 3.2856 1.7836 -6.5944 22 6 2.8705 2.3608 -5.4104 23 6 1.6472 2.1248 1.3140 24 6 2.2305 3.5421 1.3359 25 8 3.6494 3.4755 1.1794 26 6 4.0736 2.8886 -0.0525 27 6 3.5662 1.4463 -0.1303 28 1 -0.3633 0.4366 -0.9303 29 1 -0.3633 -1.0239 0.0871 30 1 -0.3634 0.5874 0.8433 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 0.8592 2.9222 -0.9613 34 1 1.6147 3.6287 -3.4795 35 1 0.1291 2.6490 -3.5171 36 1 -0.0704 0.7521 -5.0164 37 1 0.6562 -0.2765 -7.1308 38 1 3.9558 -1.5863 -11.3909 39 1 4.2287 2.0720 -7.0347 40 1 3.4895 3.1006 -4.9247 41 1 0.5609 2.1745 1.3880 42 1 2.0448 1.5547 2.1536 43 1 1.9917 4.0184 2.2868 44 1 1.8018 4.1241 0.5201 45 1 5.1625 2.8940 -0.1017 46 1 3.6691 3.4617 -0.8867 47 1 4.0025 0.8624 0.6802 48 1 3.8512 1.0101 -1.0877 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000761936768.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:10 Heat of formation + Delta-G solvation = -114.955835 kcal Electronic energy + Delta-G solvation = -29109.224558 eV Core-core repulsion = 25128.637787 eV Total energy + Delta-G solvation = -3980.586771 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.81822 -40.76352 -39.56566 -38.19741 -36.82402 -34.40696 -33.70561 -32.51631 -32.07732 -31.76571 -31.50920 -28.20946 -27.04084 -26.12358 -24.66352 -23.63109 -22.95833 -22.54932 -21.44466 -20.19577 -19.84284 -18.86174 -18.13336 -17.26731 -16.97252 -16.71489 -16.61416 -16.35090 -16.04266 -15.89541 -15.52464 -15.42887 -15.23477 -14.98645 -14.81785 -14.43795 -14.37730 -14.11822 -13.96611 -13.62389 -13.50473 -13.25524 -12.96200 -12.91845 -12.66428 -12.46149 -12.42896 -12.31620 -12.22340 -12.17319 -12.12368 -12.01117 -11.49522 -11.25064 -11.17627 -10.81405 -10.63101 -10.39308 -9.86499 -9.75544 -8.88731 -8.47933 -6.16008 0.62107 0.68784 1.32872 1.42587 1.50933 1.82367 2.16867 2.29001 2.85372 2.98349 3.17987 3.53137 3.58112 3.79471 3.84177 3.90036 4.03682 4.06316 4.17578 4.21104 4.28473 4.36401 4.46817 4.50336 4.53171 4.59327 4.61411 4.67789 4.72872 4.80953 4.82350 4.88352 4.96423 5.05734 5.09623 5.13411 5.14739 5.15990 5.18251 5.27855 5.31403 5.42780 5.57626 5.70655 5.72422 5.79192 6.02669 6.24235 6.27907 6.74463 6.96727 7.47656 7.78646 8.75685 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021255 B = 0.002461 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.010161 B =11375.687303 C =11904.279296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.133 4.133 3 C 0.183 3.817 4 N -0.711 5.711 5 C 0.514 3.486 6 O -0.564 6.564 7 C -0.081 4.081 8 C -0.140 4.140 9 C -0.060 4.060 10 C -0.244 4.244 11 C 0.112 3.888 12 O -0.235 6.235 13 C -0.413 4.413 14 H 0.099 0.901 15 C -0.025 4.025 16 N -0.922 5.922 17 Si 1.019 2.981 18 H -0.260 1.260 19 H -0.270 1.270 20 H -0.255 1.255 21 C -0.207 4.207 22 C -0.057 4.057 23 C -0.149 4.149 24 C 0.053 3.947 25 O -0.400 6.400 26 C 0.069 3.931 27 C -0.167 4.167 28 H 0.046 0.954 29 H 0.047 0.953 30 H 0.077 0.923 31 H 0.047 0.953 32 H 0.071 0.929 33 H 0.414 0.586 34 H 0.127 0.873 35 H 0.125 0.875 36 H 0.136 0.864 37 H 0.115 0.885 38 H 0.273 0.727 39 H 0.110 0.890 40 H 0.145 0.855 41 H 0.106 0.894 42 H 0.086 0.914 43 H 0.113 0.887 44 H 0.064 0.936 45 H 0.090 0.910 46 H 0.052 0.948 47 H 0.074 0.926 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.618 10.574 27.500 30.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.172 4.172 3 C 0.097 3.903 4 N -0.366 5.366 5 C 0.302 3.698 6 O -0.442 6.442 7 C -0.120 4.120 8 C -0.141 4.141 9 C -0.078 4.078 10 C -0.263 4.263 11 C 0.062 3.938 12 O -0.142 6.142 13 C -0.490 4.490 14 H 0.117 0.883 15 C -0.222 4.222 16 N -0.561 5.561 17 Si 0.838 3.162 18 H -0.185 1.185 19 H -0.195 1.195 20 H -0.179 1.179 21 C -0.226 4.226 22 C -0.075 4.075 23 C -0.187 4.187 24 C -0.023 4.023 25 O -0.319 6.319 26 C -0.008 4.008 27 C -0.206 4.206 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.095 0.905 31 H 0.066 0.934 32 H 0.090 0.910 33 H 0.251 0.749 34 H 0.145 0.855 35 H 0.143 0.857 36 H 0.154 0.846 37 H 0.133 0.867 38 H 0.082 0.918 39 H 0.128 0.872 40 H 0.163 0.837 41 H 0.124 0.876 42 H 0.105 0.895 43 H 0.131 0.869 44 H 0.082 0.918 45 H 0.108 0.892 46 H 0.070 0.930 47 H 0.093 0.907 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.694 9.934 27.193 30.228 hybrid contribution -0.216 -0.897 -1.169 1.489 sum -8.911 9.036 26.024 28.953 Atomic orbital electron populations 1.21687 0.94362 1.01680 1.02120 1.21879 0.97358 0.96006 1.01955 1.20265 0.91612 0.91954 0.86464 1.45982 1.50606 1.35669 1.04307 1.20983 0.79375 0.84939 0.84538 1.90715 1.40345 1.27663 1.85457 1.20554 1.04081 0.99755 0.87650 1.19230 0.96064 1.01022 0.97825 1.20907 0.99479 0.94405 0.92975 1.21218 0.98143 1.06513 1.00455 1.19922 0.93859 0.93575 0.86480 1.83932 1.50813 1.46788 1.32618 1.21807 1.04649 1.10822 1.11681 0.88342 1.26611 0.98284 1.01252 0.96013 1.70194 1.22943 1.42257 1.20664 0.84583 0.77110 0.75762 0.78714 1.18455 1.19518 1.17901 1.20436 1.00876 1.02065 0.99213 1.20847 0.95584 0.98200 0.92871 1.22527 1.03428 0.97238 0.95476 1.22850 0.80279 0.95717 1.03469 1.87921 1.23485 1.81541 1.38942 1.22455 0.99930 0.92000 0.86373 1.22547 0.96291 0.98448 1.03315 0.93497 0.93379 0.90455 0.93440 0.90991 0.74865 0.85539 0.85667 0.84571 0.86685 0.91843 0.87194 0.83739 0.87581 0.89493 0.86926 0.91809 0.89214 0.92960 0.90725 0.91355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.48 71.98 0.68 -1.38 16 2 C -0.13 -2.45 4.74 30.59 0.15 -2.31 16 3 C 0.18 2.76 0.35 3.72 0.00 2.76 16 4 N -0.71 -9.66 3.28 -422.40 -1.39 -11.05 16 5 C 0.51 11.14 7.20 87.66 0.63 11.77 16 6 O -0.56 -18.48 12.34 -3.03 -0.04 -18.52 16 7 C -0.08 -1.51 5.83 29.10 0.17 -1.34 16 8 C -0.14 -4.37 4.38 -19.83 -0.09 -4.46 16 9 C -0.06 -2.14 9.69 22.25 0.22 -1.93 16 10 C -0.24 -11.26 9.17 22.39 0.21 -11.05 16 11 C 0.11 5.88 6.65 22.58 0.15 6.03 16 12 O -0.23 -14.79 9.76 -22.63 -0.22 -15.01 16 13 C -0.41 -25.12 9.49 67.92 0.64 -24.47 16 14 H 0.10 5.53 5.21 -2.91 -0.02 5.51 16 15 C -0.02 -1.44 5.49 84.83 0.47 -0.98 16 16 N -0.92 -58.38 13.67 21.61 0.30 -58.08 16 17 Si 1.02 44.36 29.55 68.60 2.03 46.38 16 18 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 19 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 20 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 21 C -0.21 -9.34 9.99 22.39 0.22 -9.12 16 22 C -0.06 -1.99 9.69 22.25 0.22 -1.78 16 23 C -0.15 -1.31 4.66 30.75 0.14 -1.17 16 24 C 0.05 0.49 6.67 72.08 0.48 0.97 16 25 O -0.40 -6.71 10.77 -148.98 -1.60 -8.31 16 26 C 0.07 1.22 6.68 72.01 0.48 1.70 16 27 C -0.17 -3.30 4.71 30.68 0.14 -3.16 16 28 H 0.05 0.76 7.62 -2.39 -0.02 0.74 16 29 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.08 0.72 6.45 -2.38 -0.02 0.70 16 31 H 0.05 1.28 6.44 -2.39 -0.02 1.26 16 32 H 0.07 1.18 8.14 -2.38 -0.02 1.17 16 33 H 0.41 2.70 7.67 -92.71 -0.71 1.99 16 34 H 0.13 1.58 8.08 -2.38 -0.02 1.56 16 35 H 0.13 1.59 8.08 -2.39 -0.02 1.57 16 36 H 0.14 3.95 8.06 -2.91 -0.02 3.92 16 37 H 0.12 5.41 5.64 -2.91 -0.02 5.40 16 38 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 39 H 0.11 4.94 8.06 -2.91 -0.02 4.91 16 40 H 0.14 3.94 8.06 -2.91 -0.02 3.91 16 41 H 0.11 0.47 6.64 -2.39 -0.02 0.45 16 42 H 0.09 0.82 8.14 -2.39 -0.02 0.81 16 43 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.06 0.42 7.18 -2.39 -0.02 0.40 16 45 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 46 H 0.05 0.89 7.75 -2.39 -0.02 0.87 16 47 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 48 H 0.07 1.84 6.02 -2.39 -0.01 1.83 16 Total: -1.00 -82.62 379.67 4.26 -78.36 By element: Atomic # 1 Polarization: 25.86 SS G_CDS: 0.27 Total: 26.13 kcal Atomic # 6 Polarization: -44.82 SS G_CDS: 4.91 Total: -39.91 kcal Atomic # 7 Polarization: -68.04 SS G_CDS: -1.09 Total: -69.13 kcal Atomic # 8 Polarization: -39.98 SS G_CDS: -1.86 Total: -41.84 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.38 kcal Total: -82.62 4.26 -78.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761936768.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.594 kcal (2) G-P(sol) polarization free energy of solvation -82.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds