Wall clock time and date at job start Tue Mar 31 2020 18:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 C 1.52998 * 109.47394 * 2 1 4 4 N 1.46500 * 109.54303 * 305.35706 * 3 2 1 5 5 C 1.34779 * 120.00040 * 296.09433 * 4 3 2 6 6 O 1.21281 * 119.99778 * 5.19920 * 5 4 3 7 7 C 1.50701 * 120.00226 * 185.20609 * 5 4 3 8 8 C 1.50696 * 109.47112 * 179.97438 * 7 5 4 9 9 C 1.38318 * 119.96619 * 270.02104 * 8 7 5 10 10 C 1.38281 * 120.13961 * 179.97438 * 9 8 7 11 11 C 1.38118 * 120.07169 * 359.75990 * 10 9 8 12 12 C 1.38863 * 119.92550 * 0.51130 * 11 10 9 13 13 O 1.35758 * 120.06712 * 179.74268 * 12 11 10 14 14 C 1.34832 * 117.00011 * 353.91215 * 13 12 11 15 15 H 1.08002 * 119.99784 * 5.03687 * 14 13 12 16 16 C 1.38654 * 119.99819 * 185.04522 * 14 13 12 17 17 N 1.31551 * 120.00330 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99788 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47216 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47463 * 119.99892 * 18 16 14 21 21 H 1.48501 * 109.47089 * 239.99726 * 18 16 14 22 22 C 1.38083 * 119.96568 * 89.99343 * 8 7 5 23 23 C 1.53176 * 109.54339 * 65.53174 * 3 2 1 24 24 C 1.53291 * 109.06288 * 176.85451 * 23 3 2 25 25 O 1.42896 * 109.45982 * 302.44770 * 24 23 3 26 26 C 1.42902 * 114.10104 * 61.15519 * 25 24 23 27 27 C 1.53086 * 109.41394 * 298.84147 * 26 25 24 28 28 H 1.09002 * 109.47604 * 64.87171 * 1 2 3 29 29 H 1.09000 * 109.47434 * 184.87229 * 1 2 3 30 30 H 1.09004 * 109.47350 * 304.87606 * 1 2 3 31 31 H 1.09002 * 109.47674 * 239.99703 * 2 1 3 32 32 H 1.09004 * 109.47056 * 119.99500 * 2 1 3 33 33 H 0.96995 * 120.00236 * 116.09023 * 4 3 2 34 34 H 1.08997 * 109.47247 * 59.99002 * 7 5 4 35 35 H 1.09007 * 109.46539 * 299.99253 * 7 5 4 36 36 H 1.08004 * 119.93094 * 359.97134 * 9 8 7 37 37 H 1.08003 * 119.96083 * 180.02562 * 10 9 8 38 38 H 1.07994 * 120.04047 * 180.27693 * 11 10 9 39 39 H 0.96996 * 120.00702 * 180.02562 * 17 16 14 40 40 H 1.07995 * 120.03923 * 0.04745 * 22 8 7 41 41 H 1.08998 * 109.52302 * 296.84518 * 23 3 2 42 42 H 1.09003 * 109.52545 * 57.03564 * 23 3 2 43 43 H 1.09002 * 109.45719 * 182.44619 * 24 23 3 44 44 H 1.09002 * 109.46605 * 62.45206 * 24 23 3 45 45 H 1.09000 * 109.47976 * 178.85459 * 26 25 24 46 46 H 1.09001 * 109.48419 * 58.83472 * 26 25 24 47 47 H 1.08993 * 109.52441 * 297.70234 * 27 26 25 48 48 H 1.09004 * 109.56702 * 177.53972 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 1.4501 2.1708 -1.1260 5 6 1.7298 1.7979 -2.3906 6 8 2.3926 0.8034 -2.5969 7 6 1.2191 2.6166 -3.5481 8 6 1.6678 1.9902 -4.8431 9 6 2.8730 2.3635 -5.4101 10 6 3.2885 1.7906 -6.5980 11 6 2.5031 0.8397 -7.2198 12 6 1.2900 0.4668 -6.6561 13 8 0.5133 -0.4637 -7.2674 14 6 0.9145 -0.8947 -8.4804 15 1 1.8583 -0.5620 -8.8867 16 6 0.1154 -1.7648 -9.2062 17 7 -1.0340 -2.1703 -8.7111 18 14 0.6708 -2.3613 -10.8870 19 1 1.9899 -1.7624 -11.2137 20 1 0.7886 -3.8415 -10.8730 21 1 -0.3246 -1.9536 -11.9107 22 6 0.8758 1.0436 -5.4623 23 6 1.6471 2.1249 1.3139 24 6 2.2304 3.5423 1.3358 25 8 3.6492 3.4757 1.1793 26 6 4.0735 2.8886 -0.0525 27 6 3.5662 1.4464 -0.1302 28 1 -0.3634 0.4364 -0.9304 29 1 -0.3634 -1.0239 0.0873 30 1 -0.3634 0.5876 0.8431 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8901 33 1 0.8583 2.9214 -0.9614 34 1 1.6144 3.6300 -3.4788 35 1 0.1299 2.6486 -3.5178 36 1 3.4908 3.1041 -4.9239 37 1 4.2303 2.0839 -7.0379 38 1 2.8302 0.3893 -8.1452 39 1 -1.5929 -2.7793 -9.2187 40 1 -0.0653 0.7527 -5.0194 41 1 0.5608 2.1745 1.3879 42 1 2.0447 1.5548 2.1536 43 1 1.9914 4.0186 2.2866 44 1 1.8016 4.1242 0.5199 45 1 5.1624 2.8942 -0.1018 46 1 3.6690 3.4618 -0.8868 47 1 4.0024 0.8626 0.6803 48 1 3.8511 1.0102 -1.0877 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000761936987.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:15 Heat of formation + Delta-G solvation = -92.370135 kcal Electronic energy + Delta-G solvation = -29250.627837 eV Core-core repulsion = 25271.020455 eV Total energy + Delta-G solvation = -3979.607382 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.97329 -39.18631 -38.43928 -36.60141 -35.87843 -32.84945 -32.26768 -31.75348 -31.36991 -30.80450 -29.14696 -27.08212 -25.47762 -25.15117 -24.01114 -22.00342 -21.75820 -21.46407 -20.34043 -19.34844 -17.68889 -17.27593 -16.83535 -16.49089 -16.28743 -15.75505 -15.53716 -15.00907 -14.81459 -14.47412 -14.39934 -14.29605 -13.87236 -13.72490 -13.48109 -13.37059 -13.22644 -12.77277 -12.61045 -12.50610 -12.34896 -12.10674 -11.80749 -11.64453 -11.56810 -11.47622 -11.24636 -11.20065 -10.83058 -10.74025 -10.71882 -10.58901 -10.52417 -10.40206 -9.88670 -9.43820 -9.29276 -9.01978 -8.80198 -8.02054 -7.17445 -6.40473 -3.99364 2.13347 2.43489 2.77922 3.12755 3.16228 3.18995 3.21843 3.61260 4.00080 4.26355 4.49575 4.54040 4.58215 4.71670 4.85823 4.93417 5.06591 5.11967 5.14849 5.16386 5.22661 5.25272 5.35391 5.38630 5.42489 5.52063 5.58385 5.66789 5.69291 5.76360 5.77611 5.79810 5.92443 5.96838 6.03090 6.10791 6.21836 6.27024 6.38003 6.52028 6.70185 6.92228 6.95987 7.11821 7.30847 7.41116 7.47955 7.50609 7.87366 8.04859 8.35407 9.05546 9.76806 10.77971 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021107 B = 0.002590 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.263405 B =10807.391106 C =11540.644447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.134 4.134 3 C 0.182 3.818 4 N -0.731 5.731 5 C 0.517 3.483 6 O -0.511 6.511 7 C -0.096 4.096 8 C -0.031 4.031 9 C -0.196 4.196 10 C -0.075 4.075 11 C -0.231 4.231 12 C 0.155 3.845 13 O -0.181 6.181 14 C -0.390 4.390 15 H 0.092 0.908 16 C 0.038 3.962 17 N -0.865 5.865 18 Si 0.940 3.060 19 H -0.267 1.267 20 H -0.276 1.276 21 H -0.276 1.276 22 C -0.174 4.174 23 C -0.159 4.159 24 C 0.061 3.939 25 O -0.384 6.384 26 C 0.064 3.936 27 C -0.169 4.169 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.087 0.913 32 H 0.064 0.936 33 H 0.396 0.604 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.106 0.894 38 H 0.126 0.874 39 H 0.268 0.732 40 H 0.112 0.888 41 H 0.082 0.918 42 H 0.086 0.914 43 H 0.093 0.907 44 H 0.049 0.951 45 H 0.092 0.908 46 H 0.051 0.949 47 H 0.076 0.924 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.588 11.784 19.222 23.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.173 4.173 3 C 0.096 3.904 4 N -0.386 5.386 5 C 0.304 3.696 6 O -0.385 6.385 7 C -0.136 4.136 8 C -0.032 4.032 9 C -0.215 4.215 10 C -0.093 4.093 11 C -0.250 4.250 12 C 0.102 3.898 13 O -0.084 6.084 14 C -0.466 4.466 15 H 0.109 0.891 16 C -0.166 4.166 17 N -0.500 5.500 18 Si 0.765 3.235 19 H -0.191 1.191 20 H -0.202 1.202 21 H -0.202 1.202 22 C -0.193 4.193 23 C -0.197 4.197 24 C -0.016 4.016 25 O -0.303 6.303 26 C -0.012 4.012 27 C -0.207 4.207 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.106 0.894 32 H 0.083 0.917 33 H 0.230 0.770 34 H 0.114 0.886 35 H 0.115 0.885 36 H 0.119 0.881 37 H 0.125 0.875 38 H 0.143 0.857 39 H 0.078 0.922 40 H 0.131 0.869 41 H 0.100 0.900 42 H 0.104 0.896 43 H 0.112 0.888 44 H 0.068 0.932 45 H 0.110 0.890 46 H 0.069 0.931 47 H 0.094 0.906 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 4.823 10.846 19.189 22.564 hybrid contribution -0.218 -0.117 -0.986 1.016 sum 4.605 10.729 18.203 21.626 Atomic orbital electron populations 1.21718 0.95561 1.01573 1.01550 1.21933 0.96403 0.95395 1.03540 1.20268 0.92682 0.92253 0.85153 1.46181 1.51221 1.35779 1.05394 1.20674 0.80088 0.85522 0.83323 1.90695 1.37902 1.25257 1.84632 1.20613 1.02499 0.99191 0.91261 1.18632 0.94704 0.96476 0.93382 1.20325 0.97448 1.05265 0.98471 1.20672 0.98059 0.95687 0.94896 1.21172 0.96766 1.03509 1.03548 1.19277 0.90081 0.88402 0.92064 1.83978 1.45727 1.47367 1.31358 1.21362 1.05681 1.27694 0.91865 0.89100 1.25269 0.95189 0.96532 0.99570 1.70045 1.10575 1.31558 1.37827 0.85660 0.78740 0.78719 0.80377 1.19128 1.20188 1.20190 1.19932 1.01610 1.01069 0.96729 1.22565 1.02046 0.97625 0.97420 1.22586 0.81783 0.95454 1.01798 1.87924 1.21458 1.81653 1.39229 1.22547 0.99849 0.92703 0.86113 1.22617 0.94873 0.98019 1.05183 0.92587 0.92798 0.93104 0.89425 0.91692 0.77011 0.88590 0.88461 0.88056 0.87548 0.85669 0.92169 0.86946 0.89953 0.89566 0.88847 0.93231 0.88968 0.93114 0.90555 0.88128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.48 37.15 0.35 -1.12 16 2 C -0.13 -1.45 4.74 -26.74 -0.13 -1.58 16 3 C 0.18 1.71 0.35 -131.64 -0.05 1.67 16 4 N -0.73 -6.87 3.28 -47.44 -0.16 -7.02 16 5 C 0.52 6.84 7.21 -10.98 -0.08 6.76 16 6 O -0.51 -8.98 12.34 5.56 0.07 -8.91 16 7 C -0.10 -1.22 5.83 -29.04 -0.17 -1.39 16 8 C -0.03 -0.56 4.37 -104.65 -0.46 -1.02 16 9 C -0.20 -3.50 9.70 -39.54 -0.38 -3.88 16 10 C -0.07 -1.44 10.04 -39.61 -0.40 -1.83 16 11 C -0.23 -5.22 9.17 -39.39 -0.36 -5.58 16 12 C 0.16 3.88 6.65 -39.11 -0.26 3.62 16 13 O -0.18 -5.29 9.76 0.02 0.00 -5.29 16 14 C -0.39 -11.15 9.49 30.89 0.29 -10.85 16 15 H 0.09 2.42 5.21 -52.49 -0.27 2.15 16 16 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 17 N -0.86 -25.79 13.67 55.48 0.76 -25.03 16 18 Si 0.94 20.92 29.55 -169.99 -5.02 15.90 16 19 H -0.27 -5.70 7.11 56.52 0.40 -5.29 16 20 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 21 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 22 C -0.17 -3.79 9.65 -39.39 -0.38 -4.17 16 23 C -0.16 -1.10 4.66 -26.49 -0.12 -1.23 16 24 C 0.06 0.43 6.67 37.31 0.25 0.68 16 25 O -0.38 -3.80 10.77 -35.23 -0.38 -4.18 16 26 C 0.06 0.63 6.68 37.20 0.25 0.88 16 27 C -0.17 -1.77 4.71 -26.59 -0.13 -1.90 16 28 H 0.06 0.63 7.63 -51.93 -0.40 0.23 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.40 6.44 -51.93 -0.33 0.07 16 31 H 0.09 1.26 6.44 -51.93 -0.33 0.92 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.40 2.64 7.67 -40.82 -0.31 2.33 16 34 H 0.10 0.95 8.08 -51.93 -0.42 0.53 16 35 H 0.10 1.07 8.09 -51.93 -0.42 0.65 16 36 H 0.10 1.53 8.06 -52.48 -0.42 1.10 16 37 H 0.11 1.72 8.06 -52.48 -0.42 1.30 16 38 H 0.13 2.83 5.65 -52.49 -0.30 2.54 16 39 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 40 H 0.11 2.39 8.06 -52.49 -0.42 1.96 16 41 H 0.08 0.47 6.64 -51.93 -0.35 0.12 16 42 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.05 0.31 7.18 -51.93 -0.37 -0.07 16 45 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.05 0.50 7.75 -51.93 -0.40 0.10 16 47 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.10 1.34 6.02 -51.93 -0.31 1.03 16 LS Contribution 379.69 15.07 5.72 5.72 Total: -1.00 -33.99 379.69 -8.03 -42.02 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -7.16 Total: 6.77 kcal Atomic # 6 Polarization: -18.12 SS G_CDS: -1.86 Total: -19.98 kcal Atomic # 7 Polarization: -32.65 SS G_CDS: 0.60 Total: -32.05 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: -0.31 Total: -18.39 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.99 -8.03 -42.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761936987.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.351 kcal (2) G-P(sol) polarization free energy of solvation -33.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds