Wall clock time and date at job start Tue Mar 31 2020 18:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 C 1.52998 * 109.47394 * 2 1 4 4 N 1.46500 * 109.54303 * 305.35706 * 3 2 1 5 5 C 1.34779 * 120.00040 * 296.09433 * 4 3 2 6 6 O 1.21281 * 119.99778 * 5.19920 * 5 4 3 7 7 C 1.50701 * 120.00226 * 185.20609 * 5 4 3 8 8 C 1.50696 * 109.47112 * 179.97438 * 7 5 4 9 9 C 1.38318 * 119.96619 * 270.02104 * 8 7 5 10 10 C 1.38281 * 120.13961 * 179.97438 * 9 8 7 11 11 C 1.38118 * 120.07169 * 359.75990 * 10 9 8 12 12 C 1.38863 * 119.92550 * 0.51130 * 11 10 9 13 13 O 1.35758 * 120.06712 * 179.74268 * 12 11 10 14 14 C 1.34832 * 117.00011 * 353.91215 * 13 12 11 15 15 H 1.08002 * 119.99784 * 5.03687 * 14 13 12 16 16 C 1.38654 * 119.99819 * 185.04522 * 14 13 12 17 17 N 1.31551 * 120.00330 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99788 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47216 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47463 * 119.99892 * 18 16 14 21 21 H 1.48501 * 109.47089 * 239.99726 * 18 16 14 22 22 C 1.38083 * 119.96568 * 89.99343 * 8 7 5 23 23 C 1.53176 * 109.54339 * 65.53174 * 3 2 1 24 24 C 1.53291 * 109.06288 * 176.85451 * 23 3 2 25 25 O 1.42896 * 109.45982 * 302.44770 * 24 23 3 26 26 C 1.42902 * 114.10104 * 61.15519 * 25 24 23 27 27 C 1.53086 * 109.41394 * 298.84147 * 26 25 24 28 28 H 1.09002 * 109.47604 * 64.87171 * 1 2 3 29 29 H 1.09000 * 109.47434 * 184.87229 * 1 2 3 30 30 H 1.09004 * 109.47350 * 304.87606 * 1 2 3 31 31 H 1.09002 * 109.47674 * 239.99703 * 2 1 3 32 32 H 1.09004 * 109.47056 * 119.99500 * 2 1 3 33 33 H 0.96995 * 120.00236 * 116.09023 * 4 3 2 34 34 H 1.08997 * 109.47247 * 59.99002 * 7 5 4 35 35 H 1.09007 * 109.46539 * 299.99253 * 7 5 4 36 36 H 1.08004 * 119.93094 * 359.97134 * 9 8 7 37 37 H 1.08003 * 119.96083 * 180.02562 * 10 9 8 38 38 H 1.07994 * 120.04047 * 180.27693 * 11 10 9 39 39 H 0.96996 * 120.00702 * 180.02562 * 17 16 14 40 40 H 1.07995 * 120.03923 * 0.04745 * 22 8 7 41 41 H 1.08998 * 109.52302 * 296.84518 * 23 3 2 42 42 H 1.09003 * 109.52545 * 57.03564 * 23 3 2 43 43 H 1.09002 * 109.45719 * 182.44619 * 24 23 3 44 44 H 1.09002 * 109.46605 * 62.45206 * 24 23 3 45 45 H 1.09000 * 109.47976 * 178.85459 * 26 25 24 46 46 H 1.09001 * 109.48419 * 58.83472 * 26 25 24 47 47 H 1.08993 * 109.52441 * 297.70234 * 27 26 25 48 48 H 1.09004 * 109.56702 * 177.53972 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 1.4501 2.1708 -1.1260 5 6 1.7298 1.7979 -2.3906 6 8 2.3926 0.8034 -2.5969 7 6 1.2191 2.6166 -3.5481 8 6 1.6678 1.9902 -4.8431 9 6 2.8730 2.3635 -5.4101 10 6 3.2885 1.7906 -6.5980 11 6 2.5031 0.8397 -7.2198 12 6 1.2900 0.4668 -6.6561 13 8 0.5133 -0.4637 -7.2674 14 6 0.9145 -0.8947 -8.4804 15 1 1.8583 -0.5620 -8.8867 16 6 0.1154 -1.7648 -9.2062 17 7 -1.0340 -2.1703 -8.7111 18 14 0.6708 -2.3613 -10.8870 19 1 1.9899 -1.7624 -11.2137 20 1 0.7886 -3.8415 -10.8730 21 1 -0.3246 -1.9536 -11.9107 22 6 0.8758 1.0436 -5.4623 23 6 1.6471 2.1249 1.3139 24 6 2.2304 3.5423 1.3358 25 8 3.6492 3.4757 1.1793 26 6 4.0735 2.8886 -0.0525 27 6 3.5662 1.4464 -0.1302 28 1 -0.3634 0.4364 -0.9304 29 1 -0.3634 -1.0239 0.0873 30 1 -0.3634 0.5876 0.8431 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8901 33 1 0.8583 2.9214 -0.9614 34 1 1.6144 3.6300 -3.4788 35 1 0.1299 2.6486 -3.5178 36 1 3.4908 3.1041 -4.9239 37 1 4.2303 2.0839 -7.0379 38 1 2.8302 0.3893 -8.1452 39 1 -1.5929 -2.7793 -9.2187 40 1 -0.0653 0.7527 -5.0194 41 1 0.5608 2.1745 1.3879 42 1 2.0447 1.5548 2.1536 43 1 1.9914 4.0186 2.2866 44 1 1.8016 4.1242 0.5199 45 1 5.1624 2.8942 -0.1018 46 1 3.6690 3.4618 -0.8868 47 1 4.0024 0.8626 0.6803 48 1 3.8511 1.0102 -1.0877 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000761936987.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:14 Heat of formation + Delta-G solvation = -114.904283 kcal Electronic energy + Delta-G solvation = -29251.604991 eV Core-core repulsion = 25271.020455 eV Total energy + Delta-G solvation = -3980.584536 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.85708 -40.77044 -39.57684 -38.19049 -36.85688 -34.35669 -33.90002 -32.95077 -32.15052 -31.56804 -30.84865 -28.44903 -27.25571 -26.19733 -24.67931 -23.37923 -23.03418 -22.58847 -21.66796 -20.23360 -19.49954 -18.81364 -18.13407 -17.27124 -16.97297 -16.80795 -16.62449 -16.53289 -16.13473 -16.04586 -15.55970 -15.45244 -15.21421 -15.00500 -14.84586 -14.44139 -14.29618 -14.11379 -13.93115 -13.59415 -13.49562 -13.26010 -12.97913 -12.94472 -12.68604 -12.48068 -12.45303 -12.36345 -12.23325 -12.19086 -12.08624 -12.04111 -11.52176 -11.25524 -11.20265 -10.82304 -10.66195 -10.46073 -9.90005 -9.61990 -8.97235 -8.47729 -6.16157 0.53187 0.76427 1.33167 1.41931 1.51882 1.75581 2.16708 2.24187 2.85193 2.98785 3.18386 3.44953 3.56208 3.77734 3.82825 3.83906 4.03561 4.10389 4.14287 4.27550 4.32207 4.33299 4.44306 4.45895 4.50144 4.57298 4.59637 4.65302 4.67322 4.74162 4.82395 4.87497 4.93818 5.03929 5.07295 5.11846 5.13175 5.14445 5.17867 5.25170 5.31497 5.39081 5.65255 5.67686 5.73421 5.76261 6.02719 6.24327 6.28124 6.68118 6.97057 7.40665 7.79030 8.76141 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021107 B = 0.002590 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.263405 B =10807.391106 C =11540.644447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.134 4.134 3 C 0.183 3.817 4 N -0.710 5.710 5 C 0.518 3.482 6 O -0.562 6.562 7 C -0.095 4.095 8 C -0.022 4.022 9 C -0.179 4.179 10 C -0.074 4.074 11 C -0.248 4.248 12 C 0.112 3.888 13 O -0.236 6.236 14 C -0.413 4.413 15 H 0.099 0.901 16 C -0.024 4.024 17 N -0.922 5.922 18 Si 1.019 2.981 19 H -0.252 1.252 20 H -0.269 1.269 21 H -0.266 1.266 22 C -0.192 4.192 23 C -0.150 4.150 24 C 0.054 3.946 25 O -0.398 6.398 26 C 0.070 3.930 27 C -0.166 4.166 28 H 0.040 0.960 29 H 0.045 0.955 30 H 0.080 0.920 31 H 0.045 0.955 32 H 0.075 0.925 33 H 0.414 0.586 34 H 0.140 0.860 35 H 0.117 0.883 36 H 0.146 0.854 37 H 0.143 0.857 38 H 0.116 0.884 39 H 0.272 0.728 40 H 0.104 0.896 41 H 0.103 0.897 42 H 0.089 0.911 43 H 0.114 0.886 44 H 0.063 0.937 45 H 0.094 0.906 46 H 0.053 0.947 47 H 0.076 0.924 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.700 14.964 21.064 26.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.172 4.172 3 C 0.097 3.903 4 N -0.365 5.365 5 C 0.306 3.694 6 O -0.440 6.440 7 C -0.134 4.134 8 C -0.022 4.022 9 C -0.197 4.197 10 C -0.092 4.092 11 C -0.267 4.267 12 C 0.062 3.938 13 O -0.143 6.143 14 C -0.489 4.489 15 H 0.117 0.883 16 C -0.221 4.221 17 N -0.561 5.561 18 Si 0.839 3.161 19 H -0.176 1.176 20 H -0.194 1.194 21 H -0.190 1.190 22 C -0.211 4.211 23 C -0.187 4.187 24 C -0.022 4.022 25 O -0.318 6.318 26 C -0.007 4.007 27 C -0.205 4.205 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.098 0.902 31 H 0.064 0.936 32 H 0.094 0.906 33 H 0.251 0.749 34 H 0.158 0.842 35 H 0.136 0.864 36 H 0.164 0.836 37 H 0.161 0.839 38 H 0.133 0.867 39 H 0.081 0.919 40 H 0.122 0.878 41 H 0.121 0.879 42 H 0.107 0.893 43 H 0.132 0.868 44 H 0.081 0.919 45 H 0.112 0.888 46 H 0.071 0.929 47 H 0.095 0.905 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.941 14.103 21.092 26.059 hybrid contribution -0.445 -0.903 -1.275 1.624 sum 5.496 13.201 19.818 24.438 Atomic orbital electron populations 1.21697 0.94789 1.01621 1.01933 1.21887 0.97020 0.96317 1.02011 1.20299 0.91979 0.91679 0.86367 1.45957 1.50520 1.35749 1.04229 1.20725 0.79442 0.84798 0.84481 1.90713 1.40420 1.27394 1.85436 1.20728 1.04046 1.00560 0.88066 1.19165 0.93898 0.94346 0.94807 1.20943 0.97076 1.04423 0.97302 1.21119 0.98775 0.94135 0.95172 1.21279 0.96715 1.04918 1.03782 1.19879 0.91194 0.89201 0.93485 1.83936 1.47876 1.50109 1.32336 1.21850 1.06375 1.28312 0.92354 0.88334 1.26598 0.95106 0.96339 1.04083 1.70190 1.12436 1.33311 1.40144 0.84523 0.78946 0.78238 0.74431 1.17565 1.19381 1.19049 1.20202 1.02341 1.02329 0.96251 1.22534 1.03363 0.97428 0.95406 1.22834 0.80356 0.95509 1.03492 1.87916 1.23315 1.81509 1.39013 1.22468 1.00067 0.91785 0.86371 1.22542 0.95805 0.98705 1.03452 0.94085 0.93567 0.90161 0.93640 0.90606 0.74855 0.84215 0.86442 0.83610 0.83875 0.86662 0.91863 0.87780 0.87852 0.89278 0.86850 0.91863 0.88830 0.92916 0.90529 0.91230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 9.48 71.98 0.68 -2.01 16 2 C -0.13 -2.83 4.74 30.59 0.15 -2.69 16 3 C 0.18 3.07 0.35 3.72 0.00 3.07 16 4 N -0.71 -11.39 3.28 -422.38 -1.38 -12.78 16 5 C 0.52 12.75 7.21 87.66 0.63 13.38 16 6 O -0.56 -19.84 12.34 -3.03 -0.04 -19.88 16 7 C -0.09 -2.10 5.83 29.10 0.17 -1.93 16 8 C -0.02 -0.74 4.37 -19.88 -0.09 -0.83 16 9 C -0.18 -5.81 9.70 22.30 0.22 -5.60 16 10 C -0.07 -2.71 10.04 22.25 0.22 -2.48 16 11 C -0.25 -11.52 9.17 22.39 0.21 -11.32 16 12 C 0.11 5.94 6.65 22.58 0.15 6.09 16 13 O -0.24 -14.90 9.76 -22.84 -0.22 -15.12 16 14 C -0.41 -25.09 9.49 67.92 0.64 -24.45 16 15 H 0.10 5.55 5.21 -2.91 -0.02 5.53 16 16 C -0.02 -1.43 5.49 84.83 0.47 -0.96 16 17 N -0.92 -58.25 13.67 21.61 0.30 -57.96 16 18 Si 1.02 44.33 29.55 68.60 2.03 46.35 16 19 H -0.25 -10.18 7.11 99.48 0.71 -9.47 16 20 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 21 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 22 C -0.19 -8.65 9.65 22.39 0.22 -8.43 16 23 C -0.15 -1.53 4.66 30.75 0.14 -1.38 16 24 C 0.05 0.54 6.67 72.08 0.48 1.02 16 25 O -0.40 -6.65 10.77 -148.98 -1.60 -8.25 16 26 C 0.07 1.20 6.68 72.01 0.48 1.68 16 27 C -0.17 -3.33 4.71 30.68 0.14 -3.19 16 28 H 0.04 0.89 7.63 -2.39 -0.02 0.87 16 29 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.08 1.02 6.44 -2.39 -0.02 1.00 16 31 H 0.04 1.37 6.44 -2.39 -0.02 1.35 16 32 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.41 3.75 7.67 -92.71 -0.71 3.03 16 34 H 0.14 1.94 8.08 -2.39 -0.02 1.92 16 35 H 0.12 2.20 8.09 -2.38 -0.02 2.18 16 36 H 0.15 3.53 8.06 -2.91 -0.02 3.51 16 37 H 0.14 4.14 8.06 -2.91 -0.02 4.12 16 38 H 0.12 5.45 5.65 -2.91 -0.02 5.44 16 39 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 40 H 0.10 4.71 8.06 -2.91 -0.02 4.68 16 41 H 0.10 0.67 6.64 -2.39 -0.02 0.65 16 42 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.06 0.47 7.18 -2.39 -0.02 0.45 16 45 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 46 H 0.05 0.87 7.75 -2.39 -0.02 0.85 16 47 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 48 H 0.07 1.88 6.02 -2.39 -0.01 1.86 16 Total: -1.00 -82.89 379.69 4.26 -78.63 By element: Atomic # 1 Polarization: 28.75 SS G_CDS: 0.27 Total: 29.01 kcal Atomic # 6 Polarization: -44.93 SS G_CDS: 4.91 Total: -40.02 kcal Atomic # 7 Polarization: -69.65 SS G_CDS: -1.09 Total: -70.73 kcal Atomic # 8 Polarization: -41.38 SS G_CDS: -1.86 Total: -43.25 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.35 kcal Total: -82.89 4.26 -78.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761936987.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.275 kcal (2) G-P(sol) polarization free energy of solvation -82.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds