Wall clock time and date at job start Tue Mar 31 2020 18:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46903 * 2 1 4 4 C 1.52999 * 109.46901 * 240.00006 * 2 1 3 5 5 C 1.50703 * 109.46771 * 120.00292 * 2 1 3 6 6 C 1.38234 * 120.00257 * 60.00257 * 5 2 1 7 7 C 1.38238 * 119.99675 * 180.27927 * 6 5 2 8 8 C 1.38229 * 120.00124 * 359.45911 * 7 6 5 9 9 C 1.50699 * 120.00230 * 180.28369 * 8 7 6 10 10 C 1.50691 * 109.47261 * 270.27992 * 9 8 7 11 11 O 1.20827 * 120.00056 * 359.97438 * 10 9 8 12 12 O 1.34234 * 120.00428 * 179.97438 * 10 9 8 13 13 C 1.45202 * 117.00403 * 179.97438 * 12 10 9 14 14 C 1.50697 * 109.46906 * 179.97438 * 13 12 10 15 15 O 1.21276 * 120.00524 * 0.02562 * 14 13 12 16 16 N 1.34782 * 119.99725 * 179.97438 * 14 13 12 17 17 C 1.46498 * 119.99854 * 179.97438 * 16 14 13 18 18 C 1.50704 * 109.46951 * 180.02562 * 17 16 14 19 19 H 1.08003 * 119.99960 * 0.02562 * 18 17 16 20 20 C 1.37875 * 119.99817 * 180.02562 * 18 17 16 21 21 N 1.31510 * 120.00239 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99784 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47123 * 90.00008 * 22 20 18 24 24 H 1.48497 * 109.47299 * 210.00157 * 22 20 18 25 25 H 1.48501 * 109.47068 * 330.00309 * 22 20 18 26 26 C 1.38234 * 119.99957 * 0.56005 * 8 7 6 27 27 C 1.38234 * 119.99503 * 240.01857 * 5 2 1 28 28 H 1.09007 * 109.47341 * 299.99607 * 1 2 3 29 29 H 1.08998 * 109.47273 * 59.99893 * 1 2 3 30 30 H 1.09001 * 109.47339 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46371 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47244 * 300.00125 * 3 2 1 33 33 H 1.08999 * 109.46950 * 60.00346 * 3 2 1 34 34 H 1.09001 * 109.46958 * 300.00030 * 4 2 1 35 35 H 1.08998 * 109.47075 * 59.99980 * 4 2 1 36 36 H 1.08997 * 109.46840 * 179.97438 * 4 2 1 37 37 H 1.08002 * 119.99744 * 359.97438 * 6 5 2 38 38 H 1.08004 * 119.99577 * 179.72816 * 7 6 5 39 39 H 1.09007 * 109.47085 * 30.27493 * 9 8 7 40 40 H 1.08998 * 109.47270 * 150.26989 * 9 8 7 41 41 H 1.09001 * 109.46740 * 300.00014 * 13 12 10 42 42 H 1.09000 * 109.46496 * 60.00118 * 13 12 10 43 43 H 0.97003 * 119.99840 * 0.02562 * 16 14 13 44 44 H 1.08994 * 109.47273 * 300.00275 * 17 16 14 45 45 H 1.09005 * 109.47013 * 60.00705 * 17 16 14 46 46 H 0.96995 * 120.00045 * 179.97438 * 21 20 18 47 47 H 1.08001 * 120.00274 * 179.72697 * 26 8 7 48 48 H 1.07997 * 120.00460 * 0.02562 * 27 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0323 -0.7105 1.2305 6 6 1.6983 -2.0340 1.4492 7 6 2.1544 -2.6839 2.5808 8 6 2.9534 -2.0137 3.4880 9 6 3.4558 -2.7241 4.7185 10 6 2.4630 -2.5513 5.8388 11 8 1.4514 -1.9160 5.6570 12 8 2.7024 -3.1031 7.0389 13 6 1.7027 -2.8952 8.0713 14 6 2.1395 -3.5831 9.3390 15 8 3.1899 -4.1884 9.3697 16 7 1.3631 -3.5246 10.4392 17 6 1.7873 -4.1937 11.6715 18 6 0.7499 -3.9779 12.7431 19 1 -0.1370 -3.4004 12.5276 20 6 0.9329 -4.5176 13.9985 21 7 2.0131 -5.2203 14.2611 22 14 -0.3533 -4.2506 15.3265 23 1 -1.3545 -5.3462 15.2733 24 1 0.3038 -4.2448 16.6582 25 1 -1.0320 -2.9487 15.1037 26 6 3.2870 -0.6901 3.2695 27 6 2.8267 -0.0386 2.1406 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 3.1300 1.4424 0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.6766 -1.7489 -1.2492 35 1 1.6766 -0.2074 -2.1392 36 1 3.1299 -0.7208 -1.2495 37 1 1.0771 -2.5587 0.7384 38 1 1.8898 -3.7166 2.7539 39 1 3.5773 -3.7854 4.5012 40 1 4.4159 -2.3019 5.0152 41 1 1.5894 -1.8272 8.2574 42 1 0.7498 -3.3101 7.7430 43 1 0.5230 -3.0401 10.4149 44 1 1.8996 -5.2617 11.4849 45 1 2.7408 -3.7799 11.9998 46 1 2.1420 -5.5997 15.1444 47 1 3.9077 -0.1652 3.9806 48 1 3.0870 0.9956 1.9701 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000767654536.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:56 Heat of formation + Delta-G solvation = -119.538818 kcal Electronic energy + Delta-G solvation = -27022.096482 eV Core-core repulsion = 23041.310978 eV Total energy + Delta-G solvation = -3980.785504 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.78792 -40.01871 -38.72082 -37.08402 -36.17228 -34.25559 -32.53927 -32.39841 -31.37661 -29.41078 -27.82347 -27.71603 -27.63234 -26.46298 -23.08907 -22.64315 -22.43121 -20.86241 -19.94189 -19.49705 -17.81876 -17.55835 -16.81812 -16.79409 -16.11982 -15.66703 -15.43004 -15.24684 -15.01217 -14.65052 -14.64710 -14.36164 -14.14035 -14.01160 -13.71950 -13.16849 -13.14890 -12.93983 -12.55227 -12.49555 -12.29873 -12.24276 -12.08400 -12.04432 -11.98677 -11.76582 -11.63244 -11.33035 -11.02474 -10.96129 -10.92759 -10.81552 -10.68923 -10.60856 -10.35322 -9.45023 -9.19215 -9.11845 -8.80994 -8.79143 -7.99786 -6.20449 -4.27941 1.00774 1.20399 2.13383 2.48272 3.17082 3.22613 3.28867 3.31236 3.52427 4.02517 4.17621 4.32766 4.34094 4.39608 4.60287 4.63171 4.76666 4.83859 4.89752 4.99893 5.14924 5.15721 5.17494 5.19546 5.22820 5.24262 5.25205 5.33920 5.36328 5.40351 5.47985 5.48770 5.58323 5.66687 5.78647 5.80883 5.86528 5.91245 6.20625 6.32773 6.35410 6.38215 6.76141 7.21625 7.29974 7.44815 7.58547 7.70089 7.91037 8.49076 8.70213 8.95492 9.38537 10.89679 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.030788 B = 0.001593 C = 0.001557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.219224 B =17567.715339 C =17980.631673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.031 4.031 3 C -0.145 4.145 4 C -0.138 4.138 5 C -0.067 4.067 6 C -0.115 4.115 7 C -0.099 4.099 8 C -0.080 4.080 9 C -0.073 4.073 10 C 0.460 3.540 11 O -0.503 6.503 12 O -0.330 6.330 13 C 0.049 3.951 14 C 0.499 3.501 15 O -0.535 6.535 16 N -0.707 5.707 17 C 0.251 3.749 18 C -0.546 4.546 19 H 0.064 0.936 20 C 0.064 3.936 21 N -0.885 5.885 22 Si 0.905 3.095 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.273 1.273 26 C -0.099 4.099 27 C -0.121 4.121 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.121 0.879 38 H 0.122 0.878 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.393 0.607 44 H 0.030 0.970 45 H 0.030 0.970 46 H 0.267 0.733 47 H 0.122 0.878 48 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.042 10.786 -31.080 32.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.031 4.031 3 C -0.202 4.202 4 C -0.195 4.195 5 C -0.067 4.067 6 C -0.133 4.133 7 C -0.117 4.117 8 C -0.080 4.080 9 C -0.110 4.110 10 C 0.303 3.697 11 O -0.390 6.390 12 O -0.245 6.245 13 C -0.028 4.028 14 C 0.282 3.718 15 O -0.412 6.412 16 N -0.357 5.357 17 C 0.131 3.869 18 C -0.584 4.584 19 H 0.082 0.918 20 C -0.140 4.140 21 N -0.522 5.522 22 Si 0.733 3.267 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.197 1.197 26 C -0.117 4.117 27 C -0.139 4.139 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.139 0.861 38 H 0.140 0.860 39 H 0.135 0.865 40 H 0.135 0.865 41 H 0.114 0.886 42 H 0.114 0.886 43 H 0.226 0.774 44 H 0.047 0.953 45 H 0.048 0.952 46 H 0.076 0.924 47 H 0.140 0.860 48 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 0.591 10.415 -30.891 32.605 hybrid contribution -1.253 0.350 0.954 1.614 sum -0.662 10.765 -29.937 31.820 Atomic orbital electron populations 1.21897 0.93600 1.02173 1.01966 1.19517 0.95797 0.95064 0.92704 1.21969 1.01187 0.94982 1.02038 1.21888 1.01239 1.00236 0.96161 1.19818 0.97197 0.93985 0.95747 1.20898 1.00444 0.94371 0.97606 1.20979 0.96644 0.99981 0.94062 1.19259 0.99296 0.94531 0.94937 1.20295 0.97861 1.04057 0.88808 1.23656 0.86772 0.76107 0.83203 1.90689 1.27798 1.37956 1.82604 1.86564 1.48084 1.69552 1.20309 1.22852 0.91270 1.02298 0.86413 1.19901 0.85442 0.82061 0.84361 1.90705 1.23311 1.42987 1.84196 1.46371 1.23123 1.54017 1.12173 1.19179 0.96251 0.92958 0.78545 1.21213 1.06077 1.35148 0.95983 0.91763 1.24948 0.95862 0.94642 0.98502 1.69969 1.26195 1.33635 1.22371 0.86387 0.81027 0.78659 0.80673 1.20426 1.20965 1.19731 1.21010 0.99712 0.93650 0.97319 1.21117 0.98384 1.00098 0.94264 0.92353 0.92355 0.92386 0.92229 0.92367 0.92169 0.92394 0.92362 0.92466 0.86132 0.86042 0.86533 0.86527 0.88571 0.88581 0.77431 0.95252 0.95230 0.92366 0.86041 0.85581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 8.29 37.16 0.31 -0.58 16 2 C -0.03 -0.20 0.85 -155.66 -0.13 -0.33 16 3 C -0.14 -0.82 7.13 37.16 0.27 -0.56 16 4 C -0.14 -0.78 8.29 37.16 0.31 -0.47 16 5 C -0.07 -0.57 4.76 -104.62 -0.50 -1.07 16 6 C -0.12 -1.00 8.71 -39.58 -0.34 -1.35 16 7 C -0.10 -0.93 9.70 -39.58 -0.38 -1.32 16 8 C -0.08 -0.79 4.37 -104.63 -0.46 -1.25 16 9 C -0.07 -0.69 5.94 -29.04 -0.17 -0.86 16 10 C 0.46 6.12 7.95 36.00 0.29 6.40 16 11 O -0.50 -7.77 15.78 -18.75 -0.30 -8.06 16 12 O -0.33 -5.15 9.76 -45.91 -0.45 -5.60 16 13 C 0.05 0.75 5.94 36.00 0.21 0.97 16 14 C 0.50 10.03 7.91 -10.98 -0.09 9.95 16 15 O -0.53 -13.07 16.50 -14.10 -0.23 -13.30 16 16 N -0.71 -14.64 5.55 -61.47 -0.34 -14.99 16 17 C 0.25 6.57 5.43 -5.19 -0.03 6.54 16 18 C -0.55 -14.64 9.28 -34.44 -0.32 -14.96 16 19 H 0.06 1.60 7.60 -52.48 -0.40 1.21 16 20 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 21 N -0.88 -25.80 13.29 55.43 0.74 -25.06 16 22 Si 0.91 20.67 29.54 -169.99 -5.02 15.64 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 25 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 26 C -0.10 -0.94 9.70 -39.58 -0.38 -1.32 16 27 C -0.12 -1.05 8.98 -39.58 -0.36 -1.41 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.36 7.39 -51.93 -0.38 -0.02 16 31 H 0.06 0.32 7.51 -51.93 -0.39 -0.07 16 32 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.06 0.36 7.51 -51.93 -0.39 -0.03 16 34 H 0.06 0.32 7.39 -51.93 -0.38 -0.07 16 35 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 36 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.12 0.85 7.10 -52.49 -0.37 0.48 16 38 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 39 H 0.12 0.88 8.09 -51.93 -0.42 0.46 16 40 H 0.12 0.88 8.09 -51.93 -0.42 0.46 16 41 H 0.10 1.29 8.13 -51.93 -0.42 0.87 16 42 H 0.10 1.29 8.13 -51.93 -0.42 0.87 16 43 H 0.39 6.85 8.32 -40.82 -0.34 6.51 16 44 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 45 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 47 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 48 H 0.13 0.89 5.89 -52.49 -0.31 0.58 16 LS Contribution 403.01 15.07 6.07 6.07 Total: -1.00 -34.10 403.01 -9.00 -43.11 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -7.59 Total: 2.12 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: -1.88 Total: 0.07 kcal Atomic # 7 Polarization: -40.44 SS G_CDS: 0.40 Total: -40.05 kcal Atomic # 8 Polarization: -25.98 SS G_CDS: -0.98 Total: -26.96 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.10 -9.00 -43.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767654536.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.434 kcal (2) G-P(sol) polarization free energy of solvation -34.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds