Wall clock time and date at job start Tue Mar 31 2020 18:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46903 * 2 1 4 4 C 1.52999 * 109.46901 * 240.00006 * 2 1 3 5 5 C 1.50703 * 109.46771 * 120.00292 * 2 1 3 6 6 C 1.38234 * 120.00257 * 60.00257 * 5 2 1 7 7 C 1.38238 * 119.99675 * 180.27927 * 6 5 2 8 8 C 1.38229 * 120.00124 * 359.45911 * 7 6 5 9 9 C 1.50699 * 120.00230 * 180.28369 * 8 7 6 10 10 C 1.50691 * 109.47261 * 270.27992 * 9 8 7 11 11 O 1.20827 * 120.00056 * 359.97438 * 10 9 8 12 12 O 1.34234 * 120.00428 * 179.97438 * 10 9 8 13 13 C 1.45202 * 117.00403 * 179.97438 * 12 10 9 14 14 C 1.50697 * 109.46906 * 179.97438 * 13 12 10 15 15 O 1.21276 * 120.00524 * 0.02562 * 14 13 12 16 16 N 1.34782 * 119.99725 * 179.97438 * 14 13 12 17 17 C 1.46498 * 119.99854 * 179.97438 * 16 14 13 18 18 C 1.50704 * 109.46951 * 180.02562 * 17 16 14 19 19 H 1.08003 * 119.99960 * 0.02562 * 18 17 16 20 20 C 1.37875 * 119.99817 * 180.02562 * 18 17 16 21 21 N 1.31510 * 120.00239 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99784 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47123 * 90.00008 * 22 20 18 24 24 H 1.48497 * 109.47299 * 210.00157 * 22 20 18 25 25 H 1.48501 * 109.47068 * 330.00309 * 22 20 18 26 26 C 1.38234 * 119.99957 * 0.56005 * 8 7 6 27 27 C 1.38234 * 119.99503 * 240.01857 * 5 2 1 28 28 H 1.09007 * 109.47341 * 299.99607 * 1 2 3 29 29 H 1.08998 * 109.47273 * 59.99893 * 1 2 3 30 30 H 1.09001 * 109.47339 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46371 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47244 * 300.00125 * 3 2 1 33 33 H 1.08999 * 109.46950 * 60.00346 * 3 2 1 34 34 H 1.09001 * 109.46958 * 300.00030 * 4 2 1 35 35 H 1.08998 * 109.47075 * 59.99980 * 4 2 1 36 36 H 1.08997 * 109.46840 * 179.97438 * 4 2 1 37 37 H 1.08002 * 119.99744 * 359.97438 * 6 5 2 38 38 H 1.08004 * 119.99577 * 179.72816 * 7 6 5 39 39 H 1.09007 * 109.47085 * 30.27493 * 9 8 7 40 40 H 1.08998 * 109.47270 * 150.26989 * 9 8 7 41 41 H 1.09001 * 109.46740 * 300.00014 * 13 12 10 42 42 H 1.09000 * 109.46496 * 60.00118 * 13 12 10 43 43 H 0.97003 * 119.99840 * 0.02562 * 16 14 13 44 44 H 1.08994 * 109.47273 * 300.00275 * 17 16 14 45 45 H 1.09005 * 109.47013 * 60.00705 * 17 16 14 46 46 H 0.96995 * 120.00045 * 179.97438 * 21 20 18 47 47 H 1.08001 * 120.00274 * 179.72697 * 26 8 7 48 48 H 1.07997 * 120.00460 * 0.02562 * 27 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0323 -0.7105 1.2305 6 6 1.6983 -2.0340 1.4492 7 6 2.1544 -2.6839 2.5808 8 6 2.9534 -2.0137 3.4880 9 6 3.4558 -2.7241 4.7185 10 6 2.4630 -2.5513 5.8388 11 8 1.4514 -1.9160 5.6570 12 8 2.7024 -3.1031 7.0389 13 6 1.7027 -2.8952 8.0713 14 6 2.1395 -3.5831 9.3390 15 8 3.1899 -4.1884 9.3697 16 7 1.3631 -3.5246 10.4392 17 6 1.7873 -4.1937 11.6715 18 6 0.7499 -3.9779 12.7431 19 1 -0.1370 -3.4004 12.5276 20 6 0.9329 -4.5176 13.9985 21 7 2.0131 -5.2203 14.2611 22 14 -0.3533 -4.2506 15.3265 23 1 -1.3545 -5.3462 15.2733 24 1 0.3038 -4.2448 16.6582 25 1 -1.0320 -2.9487 15.1037 26 6 3.2870 -0.6901 3.2695 27 6 2.8267 -0.0386 2.1406 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 3.1300 1.4424 0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.6766 -1.7489 -1.2492 35 1 1.6766 -0.2074 -2.1392 36 1 3.1299 -0.7208 -1.2495 37 1 1.0771 -2.5587 0.7384 38 1 1.8898 -3.7166 2.7539 39 1 3.5773 -3.7854 4.5012 40 1 4.4159 -2.3019 5.0152 41 1 1.5894 -1.8272 8.2574 42 1 0.7498 -3.3101 7.7430 43 1 0.5230 -3.0401 10.4149 44 1 1.8996 -5.2617 11.4849 45 1 2.7408 -3.7799 11.9998 46 1 2.1420 -5.5997 15.1444 47 1 3.9077 -0.1652 3.9806 48 1 3.0870 0.9956 1.9701 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000767654536.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:55 Heat of formation + Delta-G solvation = -138.572853 kcal Electronic energy + Delta-G solvation = -27022.921860 eV Core-core repulsion = 23041.310978 eV Total energy + Delta-G solvation = -3981.610882 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.83100 -40.81329 -40.29267 -37.89098 -37.15758 -36.18964 -34.42588 -33.24221 -32.01431 -30.88357 -28.99344 -28.23317 -28.08908 -27.90441 -24.72223 -23.56024 -23.28476 -21.82334 -21.64552 -20.06169 -19.26002 -18.85844 -17.94118 -17.92477 -17.35278 -17.07208 -16.74895 -16.53232 -16.00653 -15.91942 -15.75826 -15.12692 -14.91840 -14.68805 -14.68203 -14.49196 -14.27682 -14.08397 -13.77140 -13.72743 -13.49724 -13.12977 -12.95186 -12.92856 -12.84465 -12.72215 -12.60785 -12.53334 -12.23714 -12.21043 -11.90283 -11.83953 -11.68097 -11.51259 -11.50427 -11.35058 -10.92276 -10.82367 -9.94057 -9.78738 -9.47827 -8.30135 -6.46868 0.30882 0.53484 1.10718 1.35067 1.44937 1.45908 1.54222 1.57539 2.33864 2.56093 2.90396 3.05146 3.54865 3.65876 3.74520 3.79844 3.91023 4.01956 4.06659 4.08553 4.13057 4.14746 4.38603 4.39936 4.52832 4.60692 4.68783 4.79387 4.83752 4.90973 5.00854 5.03683 5.04705 5.06647 5.14338 5.18568 5.21164 5.24075 5.31195 5.37805 5.41098 5.44750 5.58148 5.62234 5.64638 5.76272 5.81387 6.11812 6.59623 6.62780 6.77898 7.19630 7.34617 8.81932 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.030788 B = 0.001593 C = 0.001557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.219224 B =17567.715339 C =17980.631673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.031 4.031 3 C -0.144 4.144 4 C -0.136 4.136 5 C -0.071 4.071 6 C -0.124 4.124 7 C -0.111 4.111 8 C -0.095 4.095 9 C -0.068 4.068 10 C 0.464 3.536 11 O -0.525 6.525 12 O -0.348 6.348 13 C 0.061 3.939 14 C 0.500 3.500 15 O -0.583 6.583 16 N -0.699 5.699 17 C 0.266 3.734 18 C -0.559 4.559 19 H 0.086 0.914 20 C 0.006 3.994 21 N -0.929 5.929 22 Si 0.985 3.015 23 H -0.271 1.271 24 H -0.284 1.284 25 H -0.256 1.256 26 C -0.112 4.112 27 C -0.131 4.131 28 H 0.046 0.954 29 H 0.070 0.930 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.069 0.931 36 H 0.053 0.947 37 H 0.134 0.866 38 H 0.130 0.870 39 H 0.136 0.864 40 H 0.136 0.864 41 H 0.121 0.879 42 H 0.121 0.879 43 H 0.412 0.588 44 H -0.007 1.007 45 H -0.007 1.007 46 H 0.269 0.731 47 H 0.130 0.870 48 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.571 12.105 -32.327 34.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.031 4.031 3 C -0.201 4.201 4 C -0.193 4.193 5 C -0.071 4.071 6 C -0.142 4.142 7 C -0.129 4.129 8 C -0.095 4.095 9 C -0.105 4.105 10 C 0.308 3.692 11 O -0.414 6.414 12 O -0.264 6.264 13 C -0.016 4.016 14 C 0.285 3.715 15 O -0.464 6.464 16 N -0.350 5.350 17 C 0.143 3.857 18 C -0.596 4.596 19 H 0.104 0.896 20 C -0.194 4.194 21 N -0.568 5.568 22 Si 0.808 3.192 23 H -0.196 1.196 24 H -0.210 1.210 25 H -0.180 1.180 26 C -0.130 4.130 27 C -0.148 4.148 28 H 0.065 0.935 29 H 0.089 0.911 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.072 0.928 37 H 0.151 0.849 38 H 0.148 0.852 39 H 0.154 0.846 40 H 0.154 0.846 41 H 0.139 0.861 42 H 0.139 0.861 43 H 0.248 0.752 44 H 0.011 0.989 45 H 0.011 0.989 46 H 0.078 0.922 47 H 0.148 0.852 48 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.054 11.766 -32.179 34.279 hybrid contribution -0.712 -0.050 1.241 1.431 sum -1.766 11.716 -30.938 33.129 Atomic orbital electron populations 1.21892 0.93486 1.02155 1.02017 1.19568 0.95844 0.95456 0.92269 1.21964 1.01343 0.94463 1.02332 1.21870 1.01025 1.00310 0.96094 1.20101 0.96695 0.94051 0.96285 1.21126 1.00579 0.94713 0.97750 1.21213 0.96723 1.00623 0.94377 1.19374 1.00016 0.94901 0.95235 1.20432 0.97418 1.05452 0.87156 1.24351 0.87049 0.75010 0.82772 1.90676 1.28988 1.39030 1.82720 1.86572 1.48415 1.70270 1.21167 1.22697 0.91777 1.02993 0.84143 1.20700 0.84289 0.81007 0.85465 1.90681 1.25471 1.45067 1.85155 1.46054 1.24107 1.53857 1.11027 1.18639 0.95108 0.91029 0.80878 1.21617 1.06598 1.35226 0.96193 0.89642 1.26040 0.98079 0.94018 1.01301 1.70127 1.28594 1.34859 1.23185 0.85149 0.77882 0.79294 0.76840 1.19639 1.20970 1.17999 1.21245 1.00045 0.93794 0.97880 1.21359 0.98427 1.00834 0.94200 0.93499 0.91084 0.92460 0.92005 0.91330 0.92633 0.92356 0.91240 0.92776 0.84862 0.85173 0.84636 0.84629 0.86073 0.86084 0.75172 0.98916 0.98893 0.92190 0.85163 0.84318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 8.29 71.98 0.60 -0.98 16 2 C -0.03 -0.36 0.85 -52.93 -0.05 -0.41 16 3 C -0.14 -1.42 7.13 71.98 0.51 -0.90 16 4 C -0.14 -1.30 8.29 71.98 0.60 -0.71 16 5 C -0.07 -1.12 4.76 -19.87 -0.09 -1.22 16 6 C -0.12 -2.03 8.71 22.27 0.19 -1.83 16 7 C -0.11 -1.99 9.70 22.27 0.22 -1.78 16 8 C -0.10 -1.77 4.37 -19.87 -0.09 -1.86 16 9 C -0.07 -1.17 5.94 29.10 0.17 -1.00 16 10 C 0.46 11.69 7.95 71.23 0.57 12.25 16 11 O -0.53 -15.46 15.78 21.96 0.35 -15.12 16 12 O -0.35 -10.48 9.76 -45.10 -0.44 -10.92 16 13 C 0.06 1.77 5.94 71.23 0.42 2.19 16 14 C 0.50 20.11 7.91 87.66 0.69 20.80 16 15 O -0.58 -29.35 16.50 15.78 0.26 -29.09 16 16 N -0.70 -29.00 5.55 -466.79 -2.59 -31.59 16 17 C 0.27 14.38 5.43 85.63 0.46 14.85 16 18 C -0.56 -29.94 9.28 25.60 0.24 -29.70 16 19 H 0.09 4.12 7.60 -2.91 -0.02 4.09 16 20 C 0.01 0.30 5.46 84.65 0.46 0.76 16 21 N -0.93 -55.44 13.29 21.45 0.28 -55.15 16 22 Si 0.99 41.87 29.54 68.60 2.03 43.89 16 23 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 24 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 25 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 26 C -0.11 -2.00 9.70 22.27 0.22 -1.79 16 27 C -0.13 -2.15 8.98 22.27 0.20 -1.95 16 28 H 0.05 0.63 8.14 -2.38 -0.02 0.62 16 29 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.06 0.65 7.39 -2.39 -0.02 0.63 16 31 H 0.06 0.58 7.51 -2.38 -0.02 0.56 16 32 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.05 0.60 7.51 -2.39 -0.02 0.58 16 34 H 0.06 0.55 7.39 -2.39 -0.02 0.53 16 35 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.13 1.73 7.10 -2.91 -0.02 1.71 16 38 H 0.13 1.97 8.06 -2.91 -0.02 1.95 16 39 H 0.14 1.82 8.09 -2.38 -0.02 1.80 16 40 H 0.14 1.82 8.09 -2.39 -0.02 1.80 16 41 H 0.12 2.97 8.13 -2.39 -0.02 2.95 16 42 H 0.12 2.97 8.13 -2.39 -0.02 2.95 16 43 H 0.41 13.81 8.32 -92.71 -0.77 13.04 16 44 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 45 H -0.01 -0.42 8.14 -2.38 -0.02 -0.44 16 46 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 47 H 0.13 1.98 8.06 -2.91 -0.02 1.95 16 48 H 0.14 1.81 5.89 -2.91 -0.02 1.79 16 Total: -1.00 -75.38 403.01 5.40 -69.98 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: 0.19 Total: 21.27 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: 5.33 Total: 6.73 kcal Atomic # 7 Polarization: -84.43 SS G_CDS: -2.30 Total: -86.74 kcal Atomic # 8 Polarization: -55.30 SS G_CDS: 0.17 Total: -55.13 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.89 kcal Total: -75.38 5.40 -69.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767654536.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.595 kcal (2) G-P(sol) polarization free energy of solvation -75.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds