Wall clock time and date at job start Tue Mar 31 2020 18:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47099 * 2 1 4 4 C 1.52996 * 109.67763 * 294.59769 * 3 2 1 5 5 C 1.53291 * 109.70928 * 55.13368 * 3 2 1 6 6 O 1.42969 * 109.22269 * 172.04502 * 5 3 2 7 7 C 1.42965 * 114.16321 * 297.42322 * 6 5 3 8 8 C 1.52878 * 109.29964 * 62.44360 * 7 6 5 9 9 N 1.47147 * 109.67899 * 174.07630 * 3 2 1 10 10 C 1.34777 * 120.98637 * 9.68528 * 9 3 2 11 11 O 1.21283 * 119.99559 * 5.53934 * 10 9 3 12 12 C 1.50696 * 120.00187 * 185.53441 * 10 9 3 13 13 C 1.50702 * 109.47023 * 179.97438 * 12 10 9 14 14 C 1.38301 * 119.92824 * 90.00633 * 13 12 10 15 15 C 1.38105 * 120.06786 * 179.97438 * 14 13 12 16 16 C 1.38880 * 119.93071 * 0.02562 * 15 14 13 17 17 O 1.35746 * 120.06752 * 180.02562 * 16 15 14 18 18 C 1.34826 * 117.00091 * 5.22124 * 17 16 15 19 19 H 1.08001 * 119.99995 * 354.97633 * 18 17 16 20 20 C 1.38657 * 119.99875 * 174.70340 * 18 17 16 21 21 N 1.31562 * 119.99959 * 180.27502 * 20 18 17 22 22 Si 1.86792 * 120.00201 * 0.27631 * 20 18 17 23 23 H 1.48498 * 109.47316 * 89.99656 * 22 20 18 24 24 H 1.48497 * 109.47189 * 210.00121 * 22 20 18 25 25 H 1.48503 * 109.47165 * 330.00003 * 22 20 18 26 26 C 1.38881 * 119.86161 * 0.26865 * 16 15 14 27 27 C 1.38102 * 119.93092 * 359.43282 * 26 16 15 28 28 H 1.08998 * 109.46961 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47419 * 299.99777 * 1 2 3 30 30 H 1.09003 * 109.46919 * 60.00115 * 1 2 3 31 31 H 1.09003 * 109.47030 * 239.99562 * 2 1 3 32 32 H 1.09003 * 109.46919 * 119.99885 * 2 1 3 33 33 H 1.08997 * 109.47000 * 299.48151 * 4 3 2 34 34 H 1.08998 * 109.47169 * 59.48242 * 4 3 2 35 35 H 1.09004 * 109.47164 * 179.48414 * 4 3 2 36 36 H 1.09003 * 109.51924 * 291.96463 * 5 3 2 37 37 H 1.08995 * 109.51672 * 52.12269 * 5 3 2 38 38 H 1.08995 * 109.51077 * 182.50365 * 7 6 5 39 39 H 1.09005 * 109.51140 * 302.59936 * 7 6 5 40 40 H 1.09001 * 109.61319 * 188.11660 * 8 7 6 41 41 H 1.08997 * 109.52357 * 67.70633 * 8 7 6 42 42 H 1.09005 * 109.46993 * 60.00061 * 12 10 9 43 43 H 1.08992 * 109.47446 * 300.00205 * 12 10 9 44 44 H 1.07999 * 119.96337 * 0.02562 * 14 13 12 45 45 H 1.07998 * 120.03240 * 180.02562 * 15 14 13 46 46 H 0.96997 * 119.99841 * 180.02562 * 21 20 18 47 47 H 1.07994 * 120.03175 * 179.73331 * 26 16 15 48 48 H 1.07997 * 119.96604 * 180.27667 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6464 2.1281 -1.3099 5 6 1.4346 2.2049 1.1841 6 8 2.0557 3.4887 1.2845 7 6 3.4599 3.4403 1.5487 8 6 4.1685 2.7403 0.3890 9 7 3.5045 1.4503 0.1430 10 6 4.2162 0.3090 0.0567 11 8 3.6639 -0.7289 -0.2409 12 6 5.6982 0.3227 0.3297 13 6 6.2516 -1.0696 0.1676 14 6 6.7168 -1.4880 -1.0658 15 6 7.2251 -2.7631 -1.2175 16 6 7.2683 -3.6257 -0.1300 17 8 7.7678 -4.8795 -0.2758 18 6 8.3047 -5.1891 -1.4733 19 1 8.2508 -4.4823 -2.2882 20 6 8.9309 -6.4125 -1.6568 21 7 9.4595 -6.7124 -2.8236 22 14 9.0240 -7.6348 -0.2474 23 1 7.8324 -8.5203 -0.2806 24 1 10.2543 -8.4551 -0.3842 25 1 9.0594 -6.9008 1.0430 26 6 6.7948 -3.2047 1.1059 27 6 6.2934 -1.9263 1.2526 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.0942 1.5944 -2.1481 34 1 0.5613 2.1203 -1.4122 35 1 2.0033 3.1580 -1.3025 36 1 0.3632 2.3302 1.0270 37 1 1.6054 1.6449 2.1034 38 1 3.8457 4.4542 1.6540 39 1 3.6381 2.8855 2.4700 40 1 5.2140 2.5717 0.6472 41 1 4.1061 3.3616 -0.5044 42 1 5.8768 0.6680 1.3481 43 1 6.1910 0.9941 -0.3732 44 1 6.6832 -0.8165 -1.9110 45 1 7.5885 -3.0890 -2.1809 46 1 9.8972 -7.5683 -2.9521 47 1 6.8232 -3.8747 1.9524 48 1 5.9292 -1.5968 2.2144 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000770879704.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:38 Heat of formation + Delta-G solvation = -66.185122 kcal Electronic energy + Delta-G solvation = -29217.654114 eV Core-core repulsion = 25239.182199 eV Total energy + Delta-G solvation = -3978.471914 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.11295 -39.26402 -38.44448 -36.75028 -35.72299 -34.66161 -32.46842 -31.43321 -30.29585 -30.21882 -28.97159 -27.02817 -26.60209 -25.11435 -24.52996 -22.58511 -22.09051 -21.50801 -20.16358 -18.70253 -17.87231 -17.27742 -17.03615 -16.91257 -16.07097 -15.88935 -15.40742 -15.31138 -14.83394 -14.76186 -14.13945 -14.03621 -13.95346 -13.68779 -13.54521 -13.42097 -13.22375 -12.99662 -12.66872 -12.52482 -12.35406 -12.25239 -12.16680 -11.92205 -11.66400 -11.63505 -11.54340 -11.24783 -10.91117 -10.82220 -10.79374 -10.74373 -10.63855 -10.41453 -10.13493 -9.36482 -9.07055 -8.83317 -8.67458 -8.21661 -7.28480 -6.39909 -4.06300 2.14883 2.17780 2.66904 2.74040 3.24070 3.26951 3.41507 3.42400 4.25370 4.27342 4.36209 4.51711 4.58444 4.64801 4.76097 4.83331 4.86846 4.92901 5.02277 5.10745 5.13544 5.19533 5.20967 5.26828 5.32353 5.36048 5.37871 5.46048 5.53309 5.58829 5.66624 5.70947 5.76482 5.85804 5.97309 6.14825 6.16368 6.23502 6.34880 6.54565 6.58325 6.71959 6.81365 7.03898 7.23671 7.28246 7.32805 7.63753 7.82420 8.06001 8.24020 8.95480 9.58408 10.67836 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.022948 B = 0.002469 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.847837 B =11338.542941 C =11673.451044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.109 4.109 3 C 0.140 3.860 4 C -0.152 4.152 5 C 0.057 3.943 6 O -0.378 6.378 7 C 0.046 3.954 8 C 0.072 3.928 9 N -0.618 5.618 10 C 0.515 3.485 11 O -0.509 6.509 12 C -0.082 4.082 13 C -0.161 4.161 14 C -0.057 4.057 15 C -0.219 4.219 16 C 0.163 3.837 17 O -0.218 6.218 18 C -0.388 4.388 19 H 0.106 0.894 20 C 0.063 3.937 21 N -0.881 5.881 22 Si 0.906 3.094 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.259 1.259 26 C -0.191 4.191 27 C -0.061 4.061 28 H 0.058 0.942 29 H 0.050 0.950 30 H 0.055 0.945 31 H 0.097 0.903 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.105 0.895 37 H 0.055 0.945 38 H 0.105 0.895 39 H 0.056 0.944 40 H 0.097 0.903 41 H 0.076 0.924 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.106 0.894 45 H 0.133 0.867 46 H 0.279 0.721 47 H 0.116 0.884 48 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.730 22.026 8.202 27.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.147 4.147 3 C 0.055 3.945 4 C -0.210 4.210 5 C -0.020 4.020 6 O -0.296 6.296 7 C -0.032 4.032 8 C -0.051 4.051 9 N -0.355 5.355 10 C 0.304 3.696 11 O -0.383 6.383 12 C -0.122 4.122 13 C -0.162 4.162 14 C -0.076 4.076 15 C -0.238 4.238 16 C 0.110 3.890 17 O -0.123 6.123 18 C -0.464 4.464 19 H 0.124 0.876 20 C -0.140 4.140 21 N -0.519 5.519 22 Si 0.731 3.269 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.183 1.183 26 C -0.210 4.210 27 C -0.080 4.080 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.115 0.885 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.123 0.877 37 H 0.073 0.927 38 H 0.123 0.877 39 H 0.074 0.926 40 H 0.115 0.885 41 H 0.094 0.906 42 H 0.109 0.891 43 H 0.110 0.890 44 H 0.124 0.876 45 H 0.150 0.850 46 H 0.089 0.911 47 H 0.134 0.866 48 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -13.968 21.236 8.032 26.657 hybrid contribution 0.330 -0.676 0.323 0.819 sum -13.638 20.560 8.354 26.048 Atomic orbital electron populations 1.22055 0.96621 1.02076 1.01260 1.21998 0.93975 0.93063 1.05631 1.21322 0.79818 0.97598 0.95714 1.22094 1.01792 1.00767 0.96355 1.23137 0.97843 0.84261 0.96804 1.87959 1.21088 1.28180 1.92416 1.22916 0.81897 1.01800 0.96590 1.22333 0.97997 0.85336 0.99459 1.48358 1.06457 1.07149 1.73559 1.20994 0.89563 0.82610 0.76449 1.90757 1.70716 1.31436 1.45343 1.20491 0.91305 0.97264 1.03120 1.18688 1.08108 0.94741 0.94678 1.20550 0.96253 0.95270 0.95492 1.21220 1.07935 0.94688 0.99966 1.19122 0.92118 0.84519 0.93192 1.83568 1.67205 1.25049 1.36462 1.20776 1.35072 1.03899 0.86657 0.87638 1.24468 0.94925 0.97166 0.97458 1.69650 1.35846 1.23844 1.22526 0.86176 0.77721 0.80414 0.82574 1.19881 1.20836 1.18344 1.20140 1.08265 0.96907 0.95705 1.20376 0.97638 0.92766 0.97198 0.92264 0.93141 0.92589 0.88479 0.91204 0.92157 0.91323 0.92033 0.87682 0.92675 0.87658 0.92596 0.88473 0.90567 0.89097 0.89031 0.87622 0.84985 0.91077 0.86593 0.87340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 9.21 37.16 0.34 -1.10 16 2 C -0.11 -1.26 3.43 -26.73 -0.09 -1.35 16 3 C 0.14 1.38 0.80 -131.32 -0.11 1.28 16 4 C -0.15 -1.37 8.31 37.16 0.31 -1.07 16 5 C 0.06 0.49 4.89 37.31 0.18 0.67 16 6 O -0.38 -3.35 10.37 -35.23 -0.37 -3.72 16 7 C 0.05 0.30 6.97 37.09 0.26 0.56 16 8 C 0.07 0.51 6.13 -3.75 -0.02 0.49 16 9 N -0.62 -6.36 2.72 -157.78 -0.43 -6.79 16 10 C 0.51 6.81 7.49 -10.99 -0.08 6.73 16 11 O -0.51 -8.72 11.80 5.55 0.07 -8.65 16 12 C -0.08 -0.98 4.20 -29.04 -0.12 -1.10 16 13 C -0.16 -2.68 4.38 -104.57 -0.46 -3.13 16 14 C -0.06 -1.07 9.69 -39.61 -0.38 -1.45 16 15 C -0.22 -4.86 9.17 -39.39 -0.36 -5.23 16 16 C 0.16 3.86 6.65 -39.11 -0.26 3.60 16 17 O -0.22 -5.88 8.59 0.07 0.00 -5.88 16 18 C -0.39 -11.14 9.95 30.89 0.31 -10.83 16 19 H 0.11 3.09 5.43 -52.49 -0.29 2.80 16 20 C 0.06 1.79 5.49 -17.51 -0.10 1.69 16 21 N -0.88 -25.75 13.96 55.48 0.77 -24.97 16 22 Si 0.91 21.98 28.62 -169.99 -4.86 17.12 16 23 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.26 -6.30 7.11 56.52 0.40 -5.90 16 26 C -0.19 -3.90 9.99 -39.39 -0.39 -4.30 16 27 C -0.06 -1.07 9.69 -39.61 -0.38 -1.45 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.05 0.37 6.55 -51.93 -0.34 0.03 16 30 H 0.06 0.44 6.58 -51.93 -0.34 0.10 16 31 H 0.10 1.40 6.40 -51.93 -0.33 1.07 16 32 H 0.07 0.94 7.19 -51.93 -0.37 0.56 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.53 6.57 -51.93 -0.34 0.19 16 35 H 0.06 0.53 7.24 -51.93 -0.38 0.16 16 36 H 0.11 0.76 6.87 -51.93 -0.36 0.40 16 37 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.10 0.52 6.04 -51.93 -0.31 0.21 16 41 H 0.08 0.50 7.69 -51.93 -0.40 0.11 16 42 H 0.09 0.86 7.81 -51.93 -0.41 0.46 16 43 H 0.09 0.91 7.75 -51.93 -0.40 0.50 16 44 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 45 H 0.13 3.08 5.64 -52.49 -0.30 2.78 16 46 H 0.28 7.53 8.31 -40.82 -0.34 7.19 16 47 H 0.12 2.21 8.06 -52.49 -0.42 1.79 16 48 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 LS Contribution 374.77 15.07 5.65 5.65 Total: -1.00 -32.68 374.77 -7.61 -40.29 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -7.08 Total: 2.93 kcal Atomic # 6 Polarization: -14.63 SS G_CDS: -1.36 Total: -15.99 kcal Atomic # 7 Polarization: -32.11 SS G_CDS: 0.35 Total: -31.76 kcal Atomic # 8 Polarization: -17.95 SS G_CDS: -0.30 Total: -18.24 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.86 Total: 17.12 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.68 -7.61 -40.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770879704.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.891 kcal (2) G-P(sol) polarization free energy of solvation -32.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds