Wall clock time and date at job start Tue Mar 31 2020 18:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47099 * 2 1 4 4 C 1.52996 * 109.67763 * 294.59769 * 3 2 1 5 5 C 1.53291 * 109.70928 * 55.13368 * 3 2 1 6 6 O 1.42969 * 109.22269 * 172.04502 * 5 3 2 7 7 C 1.42965 * 114.16321 * 297.42322 * 6 5 3 8 8 C 1.52878 * 109.29964 * 62.44360 * 7 6 5 9 9 N 1.47147 * 109.67899 * 174.07630 * 3 2 1 10 10 C 1.34777 * 120.98637 * 9.68528 * 9 3 2 11 11 O 1.21283 * 119.99559 * 5.53934 * 10 9 3 12 12 C 1.50696 * 120.00187 * 185.53441 * 10 9 3 13 13 C 1.50702 * 109.47023 * 179.97438 * 12 10 9 14 14 C 1.38301 * 119.92824 * 90.00633 * 13 12 10 15 15 C 1.38105 * 120.06786 * 179.97438 * 14 13 12 16 16 C 1.38880 * 119.93071 * 0.02562 * 15 14 13 17 17 O 1.35746 * 120.06752 * 180.02562 * 16 15 14 18 18 C 1.34826 * 117.00091 * 5.22124 * 17 16 15 19 19 H 1.08001 * 119.99995 * 354.97633 * 18 17 16 20 20 C 1.38657 * 119.99875 * 174.70340 * 18 17 16 21 21 N 1.31562 * 119.99959 * 180.27502 * 20 18 17 22 22 Si 1.86792 * 120.00201 * 0.27631 * 20 18 17 23 23 H 1.48498 * 109.47316 * 89.99656 * 22 20 18 24 24 H 1.48497 * 109.47189 * 210.00121 * 22 20 18 25 25 H 1.48503 * 109.47165 * 330.00003 * 22 20 18 26 26 C 1.38881 * 119.86161 * 0.26865 * 16 15 14 27 27 C 1.38102 * 119.93092 * 359.43282 * 26 16 15 28 28 H 1.08998 * 109.46961 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47419 * 299.99777 * 1 2 3 30 30 H 1.09003 * 109.46919 * 60.00115 * 1 2 3 31 31 H 1.09003 * 109.47030 * 239.99562 * 2 1 3 32 32 H 1.09003 * 109.46919 * 119.99885 * 2 1 3 33 33 H 1.08997 * 109.47000 * 299.48151 * 4 3 2 34 34 H 1.08998 * 109.47169 * 59.48242 * 4 3 2 35 35 H 1.09004 * 109.47164 * 179.48414 * 4 3 2 36 36 H 1.09003 * 109.51924 * 291.96463 * 5 3 2 37 37 H 1.08995 * 109.51672 * 52.12269 * 5 3 2 38 38 H 1.08995 * 109.51077 * 182.50365 * 7 6 5 39 39 H 1.09005 * 109.51140 * 302.59936 * 7 6 5 40 40 H 1.09001 * 109.61319 * 188.11660 * 8 7 6 41 41 H 1.08997 * 109.52357 * 67.70633 * 8 7 6 42 42 H 1.09005 * 109.46993 * 60.00061 * 12 10 9 43 43 H 1.08992 * 109.47446 * 300.00205 * 12 10 9 44 44 H 1.07999 * 119.96337 * 0.02562 * 14 13 12 45 45 H 1.07998 * 120.03240 * 180.02562 * 15 14 13 46 46 H 0.96997 * 119.99841 * 180.02562 * 21 20 18 47 47 H 1.07994 * 120.03175 * 179.73331 * 26 16 15 48 48 H 1.07997 * 119.96604 * 180.27667 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6464 2.1281 -1.3099 5 6 1.4346 2.2049 1.1841 6 8 2.0557 3.4887 1.2845 7 6 3.4599 3.4403 1.5487 8 6 4.1685 2.7403 0.3890 9 7 3.5045 1.4503 0.1430 10 6 4.2162 0.3090 0.0567 11 8 3.6639 -0.7289 -0.2409 12 6 5.6982 0.3227 0.3297 13 6 6.2516 -1.0696 0.1676 14 6 6.7168 -1.4880 -1.0658 15 6 7.2251 -2.7631 -1.2175 16 6 7.2683 -3.6257 -0.1300 17 8 7.7678 -4.8795 -0.2758 18 6 8.3047 -5.1891 -1.4733 19 1 8.2508 -4.4823 -2.2882 20 6 8.9309 -6.4125 -1.6568 21 7 9.4595 -6.7124 -2.8236 22 14 9.0240 -7.6348 -0.2474 23 1 7.8324 -8.5203 -0.2806 24 1 10.2543 -8.4551 -0.3842 25 1 9.0594 -6.9008 1.0430 26 6 6.7948 -3.2047 1.1059 27 6 6.2934 -1.9263 1.2526 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.0942 1.5944 -2.1481 34 1 0.5613 2.1203 -1.4122 35 1 2.0033 3.1580 -1.3025 36 1 0.3632 2.3302 1.0270 37 1 1.6054 1.6449 2.1034 38 1 3.8457 4.4542 1.6540 39 1 3.6381 2.8855 2.4700 40 1 5.2140 2.5717 0.6472 41 1 4.1061 3.3616 -0.5044 42 1 5.8768 0.6680 1.3481 43 1 6.1910 0.9941 -0.3732 44 1 6.6832 -0.8165 -1.9110 45 1 7.5885 -3.0890 -2.1809 46 1 9.8972 -7.5683 -2.9521 47 1 6.8232 -3.8747 1.9524 48 1 5.9292 -1.5968 2.2144 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000770879704.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:36 Heat of formation + Delta-G solvation = -86.775885 kcal Electronic energy + Delta-G solvation = -29218.546996 eV Core-core repulsion = 25239.182199 eV Total energy + Delta-G solvation = -3979.364797 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.95853 -40.87769 -39.49123 -38.28480 -36.57074 -35.48072 -34.51439 -32.81556 -31.82186 -30.96960 -29.78676 -28.42138 -27.36244 -26.82567 -25.40255 -23.72867 -23.32442 -22.69782 -21.40627 -19.83458 -19.55198 -19.10322 -17.84289 -17.67446 -16.90745 -16.82883 -16.53097 -16.35253 -16.04396 -15.86988 -15.73417 -15.62722 -15.30472 -14.90342 -14.69421 -14.52066 -14.33245 -14.15832 -14.05054 -13.86534 -13.66278 -13.26046 -13.03426 -12.95058 -12.80485 -12.62880 -12.49107 -12.43892 -12.33225 -12.23767 -12.09202 -11.93573 -11.67297 -11.50523 -11.29443 -11.10864 -10.92288 -10.05834 -9.80411 -9.46792 -8.98508 -8.51710 -6.24354 0.57046 0.60198 1.29418 1.34289 1.50138 1.69510 1.89948 2.26775 2.74775 2.87315 3.03797 3.14785 3.58014 3.70317 3.82790 3.90847 4.00681 4.04010 4.06354 4.13826 4.25426 4.28844 4.37049 4.43016 4.49770 4.54393 4.59730 4.60036 4.64516 4.69822 4.78824 4.80817 4.88003 4.93633 4.95778 4.98203 5.09596 5.21414 5.23493 5.34468 5.37692 5.39587 5.55317 5.69624 5.72513 5.78327 5.89747 6.14410 6.22507 6.44022 6.82503 7.28511 7.57231 8.60174 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.022948 B = 0.002469 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.847837 B =11338.542941 C =11673.451044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.101 4.101 3 C 0.136 3.864 4 C -0.146 4.146 5 C 0.063 3.937 6 O -0.389 6.389 7 C 0.042 3.958 8 C 0.065 3.935 9 N -0.613 5.613 10 C 0.512 3.488 11 O -0.560 6.560 12 C -0.080 4.080 13 C -0.134 4.134 14 C -0.064 4.064 15 C -0.238 4.238 16 C 0.119 3.881 17 O -0.246 6.246 18 C -0.400 4.400 19 H 0.079 0.921 20 C 0.009 3.991 21 N -0.924 5.924 22 Si 0.972 3.028 23 H -0.267 1.267 24 H -0.265 1.265 25 H -0.262 1.262 26 C -0.193 4.193 27 C -0.058 4.058 28 H 0.050 0.950 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.046 0.954 33 H 0.041 0.959 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.119 0.881 37 H 0.052 0.948 38 H 0.132 0.868 39 H 0.059 0.941 40 H 0.121 0.879 41 H 0.084 0.916 42 H 0.131 0.869 43 H 0.122 0.878 44 H 0.130 0.870 45 H 0.105 0.895 46 H 0.285 0.715 47 H 0.127 0.873 48 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.984 25.582 10.893 31.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.139 4.139 3 C 0.052 3.948 4 C -0.204 4.204 5 C -0.014 4.014 6 O -0.308 6.308 7 C -0.035 4.035 8 C -0.057 4.057 9 N -0.348 5.348 10 C 0.301 3.699 11 O -0.438 6.438 12 C -0.120 4.120 13 C -0.135 4.135 14 C -0.082 4.082 15 C -0.257 4.257 16 C 0.070 3.930 17 O -0.154 6.154 18 C -0.476 4.476 19 H 0.096 0.904 20 C -0.189 4.189 21 N -0.565 5.565 22 Si 0.794 3.206 23 H -0.192 1.192 24 H -0.189 1.189 25 H -0.186 1.186 26 C -0.212 4.212 27 C -0.076 4.076 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.100 0.900 35 H 0.088 0.912 36 H 0.137 0.863 37 H 0.070 0.930 38 H 0.149 0.851 39 H 0.077 0.923 40 H 0.139 0.861 41 H 0.102 0.898 42 H 0.149 0.851 43 H 0.140 0.860 44 H 0.148 0.852 45 H 0.123 0.877 46 H 0.095 0.905 47 H 0.145 0.855 48 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -15.239 24.883 10.739 31.092 hybrid contribution 0.549 -1.389 -0.468 1.565 sum -14.690 23.493 10.271 29.550 Atomic orbital electron populations 1.22017 0.94702 1.02117 1.02722 1.21771 0.95620 0.93799 1.02714 1.21395 0.79815 0.96632 0.96974 1.22043 1.02610 1.00650 0.95098 1.23083 0.98547 0.84084 0.95703 1.87956 1.22432 1.27969 1.92394 1.23125 0.80707 1.03369 0.96268 1.22654 0.99097 0.83658 1.00256 1.48394 1.06734 1.07636 1.72063 1.21130 0.89987 0.82711 0.76039 1.90784 1.71730 1.33400 1.47891 1.20611 0.90418 0.94437 1.06501 1.19255 1.04222 0.96894 0.93157 1.20871 0.95684 0.94055 0.97579 1.21236 1.09215 0.96518 0.98748 1.19668 0.93946 0.84258 0.95108 1.83505 1.69459 1.27100 1.35302 1.20710 1.35824 1.03983 0.87116 0.90373 1.25299 0.94636 0.98859 1.00089 1.69733 1.37553 1.24870 1.24369 0.85199 0.78460 0.77974 0.78963 1.19244 1.18947 1.18597 1.20490 1.07531 0.98514 0.94663 1.20899 0.95989 0.91349 0.99350 0.93038 0.91204 0.91491 0.92031 0.93542 0.94015 0.89991 0.91229 0.86336 0.92975 0.85053 0.92268 0.86095 0.89753 0.85130 0.85994 0.85219 0.87687 0.90536 0.85478 0.83127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.60 9.21 71.98 0.66 -1.94 16 2 C -0.10 -2.29 3.43 30.60 0.11 -2.18 16 3 C 0.14 2.40 0.80 3.58 0.00 2.41 16 4 C -0.15 -2.33 8.31 71.98 0.60 -1.74 16 5 C 0.06 0.89 4.89 72.08 0.35 1.24 16 6 O -0.39 -5.39 10.37 -148.98 -1.54 -6.94 16 7 C 0.04 0.36 6.97 71.94 0.50 0.86 16 8 C 0.07 0.62 6.13 86.21 0.53 1.15 16 9 N -0.61 -10.72 2.72 -771.47 -2.10 -12.81 16 10 C 0.51 12.15 7.49 87.66 0.66 12.80 16 11 O -0.56 -18.85 11.80 -3.04 -0.04 -18.89 16 12 C -0.08 -1.54 4.20 29.10 0.12 -1.42 16 13 C -0.13 -4.09 4.38 -19.83 -0.09 -4.18 16 14 C -0.06 -2.34 9.69 22.25 0.22 -2.12 16 15 C -0.24 -11.12 9.17 22.39 0.21 -10.91 16 16 C 0.12 5.88 6.65 22.58 0.15 6.03 16 17 O -0.25 -13.98 8.59 -22.65 -0.19 -14.18 16 18 C -0.40 -24.51 9.95 67.92 0.68 -23.83 16 19 H 0.08 5.03 5.43 -2.91 -0.02 5.02 16 20 C 0.01 0.56 5.49 84.83 0.47 1.02 16 21 N -0.92 -56.66 13.96 21.61 0.30 -56.36 16 22 Si 0.97 46.77 28.62 68.60 1.96 48.73 16 23 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 24 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 25 H -0.26 -12.52 7.11 99.48 0.71 -11.82 16 26 C -0.19 -7.79 9.99 22.39 0.22 -7.57 16 27 C -0.06 -1.86 9.69 22.25 0.22 -1.64 16 28 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.07 0.88 6.55 -2.39 -0.02 0.86 16 30 H 0.07 0.95 6.58 -2.39 -0.02 0.93 16 31 H 0.06 1.84 6.40 -2.39 -0.02 1.82 16 32 H 0.05 1.24 7.19 -2.39 -0.02 1.23 16 33 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.08 1.08 6.57 -2.39 -0.02 1.06 16 35 H 0.07 1.00 7.24 -2.39 -0.02 0.99 16 36 H 0.12 1.32 6.87 -2.39 -0.02 1.30 16 37 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.13 0.46 8.14 -2.39 -0.02 0.44 16 39 H 0.06 0.49 8.14 -2.38 -0.02 0.47 16 40 H 0.12 0.57 6.04 -2.39 -0.01 0.56 16 41 H 0.08 0.73 7.69 -2.39 -0.02 0.71 16 42 H 0.13 1.59 7.81 -2.38 -0.02 1.57 16 43 H 0.12 1.72 7.75 -2.39 -0.02 1.70 16 44 H 0.13 4.05 8.06 -2.91 -0.02 4.02 16 45 H 0.11 5.39 5.64 -2.91 -0.02 5.38 16 46 H 0.29 15.97 8.31 -92.71 -0.77 15.19 16 47 H 0.13 4.75 8.06 -2.91 -0.02 4.73 16 48 H 0.15 3.60 8.06 -2.91 -0.02 3.58 16 Total: -1.00 -78.06 374.77 4.96 -73.10 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: 0.97 Total: 19.37 kcal Atomic # 6 Polarization: -37.62 SS G_CDS: 5.60 Total: -32.02 kcal Atomic # 7 Polarization: -67.38 SS G_CDS: -1.79 Total: -69.17 kcal Atomic # 8 Polarization: -38.23 SS G_CDS: -1.78 Total: -40.00 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 1.96 Total: 48.73 kcal Total: -78.06 4.96 -73.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770879704.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.675 kcal (2) G-P(sol) polarization free energy of solvation -78.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds