Wall clock time and date at job start Tue Mar 31 2020 17:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35706 * 116.99640 * 2 1 4 4 C 1.39011 * 119.90552 * 89.99765 * 3 2 1 5 5 C 1.50700 * 119.95529 * 359.97438 * 4 3 2 6 6 C 1.37683 * 120.09339 * 179.97438 * 4 3 2 7 7 C 1.39793 * 119.90577 * 359.97438 * 6 4 3 8 8 C 1.47459 * 120.09511 * 180.02562 * 7 6 4 9 9 O 1.21506 * 119.99940 * 359.97438 * 8 7 6 10 10 O 1.34750 * 120.00261 * 179.97438 * 8 7 6 11 11 C 1.45205 * 116.99946 * 179.97438 * 10 8 7 12 12 C 1.53043 * 109.46004 * 270.02347 * 11 10 8 13 13 C 1.53191 * 109.31223 * 178.60289 * 12 11 10 14 14 N 1.46925 * 108.76301 * 54.65705 * 13 12 11 15 15 C 1.36934 * 120.62952 * 126.40767 * 14 13 12 16 16 H 1.08004 * 119.99787 * 331.82967 * 15 14 13 17 17 C 1.38809 * 120.00274 * 151.82609 * 15 14 13 18 18 N 1.31615 * 119.99866 * 343.06743 * 17 15 14 19 19 Si 1.86801 * 120.00156 * 163.06741 * 17 15 14 20 20 H 1.48501 * 109.46924 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.47160 * 120.00117 * 19 17 15 22 22 H 1.48491 * 109.47357 * 240.00115 * 19 17 15 23 23 C 1.46927 * 118.74043 * 306.38340 * 14 13 12 24 24 C 1.53037 * 109.45754 * 149.97485 * 11 10 8 25 25 C 1.39798 * 119.81196 * 359.97438 * 7 6 4 26 26 C 1.37677 * 119.90735 * 0.02794 * 25 7 6 27 27 C 1.50696 * 119.95480 * 180.02562 * 26 25 7 28 28 H 1.09006 * 109.46627 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47369 * 300.00019 * 1 2 3 30 30 H 1.09000 * 109.47214 * 60.00266 * 1 2 3 31 31 H 1.09001 * 109.47241 * 270.01990 * 5 4 3 32 32 H 1.08998 * 109.46945 * 30.02303 * 5 4 3 33 33 H 1.09000 * 109.47143 * 150.02390 * 5 4 3 34 34 H 1.08003 * 120.04887 * 179.69819 * 6 4 3 35 35 H 1.08990 * 109.45908 * 30.00031 * 11 10 8 36 36 H 1.08997 * 109.49848 * 298.57321 * 12 11 10 37 37 H 1.09007 * 109.49717 * 58.66827 * 12 11 10 38 38 H 1.09004 * 109.59595 * 294.87013 * 13 12 11 39 39 H 1.08998 * 109.70286 * 174.51360 * 13 12 11 40 40 H 0.97004 * 119.99949 * 179.97438 * 18 17 15 41 41 H 1.08996 * 109.58602 * 293.82467 * 23 14 13 42 42 H 1.08994 * 109.70185 * 173.46658 * 23 14 13 43 43 H 1.09003 * 109.49696 * 301.33728 * 24 11 10 44 44 H 1.08997 * 109.50084 * 61.42956 * 24 11 10 45 45 H 1.08000 * 120.04232 * 180.02562 * 25 7 6 46 46 H 1.08997 * 109.47044 * 269.97505 * 27 26 25 47 47 H 1.09003 * 109.47085 * 29.96980 * 27 26 25 48 48 H 1.09000 * 109.47561 * 149.97360 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2092 0.0000 4 6 2.3596 1.8268 1.2050 5 6 2.0155 1.1528 2.5083 6 6 2.9850 3.0533 1.2095 7 6 3.3042 3.6774 0.0000 8 6 3.9746 4.9908 0.0000 9 8 4.2499 5.5323 1.0523 10 8 4.2819 5.5904 -1.1670 11 6 4.9406 6.8822 -1.0909 12 6 3.8863 7.9913 -1.0653 13 6 4.5835 9.3505 -0.9499 14 7 5.5622 9.4736 -2.0389 15 6 5.5399 10.5555 -2.8779 16 1 4.6107 11.0720 -3.0685 17 6 6.7115 10.9885 -3.4834 18 7 7.8777 10.5963 -3.0161 19 14 6.6330 12.1279 -4.9617 20 1 5.2137 12.4190 -5.2874 21 1 7.3384 13.3963 -4.6470 22 1 7.2844 11.4747 -6.1253 23 6 6.5655 8.4140 -2.2101 24 6 5.8460 7.0654 -2.3110 25 6 2.9870 3.0522 -1.2095 26 6 2.3615 1.8258 -1.2050 27 6 2.0197 1.1507 -2.5082 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.0169 1.4569 2.8221 32 1 2.0412 0.0712 2.3758 33 1 2.7396 1.4430 3.2696 34 1 3.2247 3.5347 2.1462 35 1 5.5409 6.9308 -0.1826 36 1 3.3017 7.9589 -1.9847 37 1 3.2271 7.8470 -0.2092 38 1 5.0948 9.4187 0.0104 39 1 3.8464 10.1495 -1.0289 40 1 8.6964 10.8986 -3.4395 41 1 7.2384 8.4059 -1.3527 42 1 7.1366 8.5925 -3.1211 43 1 6.5819 6.2618 -2.3418 44 1 5.2429 7.0418 -3.2186 45 1 3.2323 3.5308 -2.1461 46 1 1.0216 1.4545 -2.8238 47 1 2.7450 1.4402 -3.2686 48 1 2.0451 0.0692 -2.3749 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000773800170.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:54 Heat of formation + Delta-G solvation = -88.076970 kcal Electronic energy + Delta-G solvation = -28577.887840 eV Core-core repulsion = 24598.466623 eV Total energy + Delta-G solvation = -3979.421216 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -40.87355 -40.01424 -37.84670 -37.11970 -35.79328 -34.00528 -32.75500 -31.79318 -30.34751 -29.62544 -28.43736 -27.05630 -26.79883 -25.32285 -23.94993 -22.30505 -21.96525 -21.27585 -20.30207 -19.31851 -18.05859 -17.68106 -17.10374 -16.57113 -16.21703 -16.10349 -15.63548 -14.86060 -14.38522 -14.33025 -14.16043 -13.93237 -13.58990 -13.57754 -13.55039 -13.36293 -13.20113 -13.04406 -12.82369 -12.55819 -12.49579 -12.23575 -11.94479 -11.73378 -11.65838 -11.52508 -11.23184 -11.07424 -10.77459 -10.71938 -10.50856 -10.34226 -10.28194 -10.17021 -9.91014 -9.66310 -9.45714 -8.98847 -8.91133 -8.51067 -6.74133 -5.82956 -3.25674 0.35779 0.98512 2.37191 2.82908 3.21462 3.36001 3.43891 3.46238 3.59136 4.35549 4.39977 4.46975 4.64285 4.81967 4.85887 4.91136 5.01645 5.05830 5.16146 5.20699 5.25374 5.26298 5.29036 5.35316 5.38083 5.40941 5.48057 5.52532 5.71236 5.73636 5.85297 5.92561 6.00355 6.05403 6.12620 6.22226 6.29862 6.36360 6.41319 6.50242 6.57860 6.71848 6.83176 6.94634 7.08814 7.27351 7.57100 7.77038 7.93571 8.40590 9.16554 9.79277 10.36015 11.26301 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.025681 B = 0.002246 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.054203 B =12464.890543 C =13021.343884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.334 6.334 3 C 0.121 3.879 4 C -0.114 4.114 5 C -0.111 4.111 6 C -0.050 4.050 7 C -0.117 4.117 8 C 0.504 3.496 9 O -0.507 6.507 10 O -0.352 6.352 11 C 0.099 3.901 12 C -0.146 4.146 13 C 0.149 3.851 14 N -0.593 5.593 15 C -0.253 4.253 16 H 0.068 0.932 17 C 0.002 3.998 18 N -0.903 5.903 19 Si 0.904 3.096 20 H -0.277 1.277 21 H -0.290 1.290 22 H -0.288 1.288 23 C 0.174 3.826 24 C -0.135 4.135 25 C -0.054 4.054 26 C -0.114 4.114 27 C -0.112 4.112 28 H 0.095 0.905 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.142 0.858 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.055 0.945 38 H 0.022 0.978 39 H 0.061 0.939 40 H 0.254 0.746 41 H 0.022 0.978 42 H 0.097 0.903 43 H 0.058 0.942 44 H 0.067 0.933 45 H 0.145 0.855 46 H 0.070 0.930 47 H 0.073 0.927 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.250 -22.498 5.862 27.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.251 6.251 3 C 0.077 3.923 4 C -0.114 4.114 5 C -0.167 4.167 6 C -0.068 4.068 7 C -0.118 4.118 8 C 0.349 3.651 9 O -0.396 6.396 10 O -0.268 6.268 11 C 0.045 3.955 12 C -0.185 4.185 13 C 0.022 3.978 14 N -0.315 5.315 15 C -0.383 4.383 16 H 0.085 0.915 17 C -0.197 4.197 18 N -0.547 5.547 19 Si 0.733 3.267 20 H -0.202 1.202 21 H -0.217 1.217 22 H -0.215 1.215 23 C 0.048 3.952 24 C -0.174 4.174 25 C -0.073 4.073 26 C -0.114 4.114 27 C -0.168 4.168 28 H 0.114 0.886 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.160 0.840 35 H 0.098 0.902 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.040 0.960 39 H 0.079 0.921 40 H 0.064 0.936 41 H 0.040 0.960 42 H 0.115 0.885 43 H 0.077 0.923 44 H 0.086 0.914 45 H 0.163 0.837 46 H 0.088 0.912 47 H 0.092 0.908 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -13.910 -22.400 6.084 27.061 hybrid contribution -0.034 0.863 -0.629 1.068 sum -13.944 -21.538 5.455 26.231 Atomic orbital electron populations 1.23004 0.78448 1.03361 1.00996 1.85901 1.20053 1.24805 1.94305 1.18609 0.96461 0.85708 0.91483 1.20077 1.01155 0.94724 0.95472 1.20704 1.01921 1.00958 0.93147 1.21054 0.94837 0.93201 0.97757 1.19262 1.04271 0.93726 0.94591 1.20982 0.76331 0.85145 0.82649 1.90824 1.50745 1.65308 1.32763 1.86601 1.71006 1.36285 1.32946 1.22986 0.93824 0.77557 1.01086 1.22469 0.97813 0.96743 1.01517 1.20863 0.92450 0.92998 0.91481 1.44130 1.34291 1.21385 1.31741 1.19231 0.92992 1.06390 1.19639 0.91476 1.25074 0.95316 0.98786 1.00487 1.70028 0.96647 1.47888 1.40176 0.86203 0.77589 0.80148 0.82716 1.20214 1.21697 1.21489 1.20810 0.89950 0.82401 1.02064 1.22464 0.97877 1.01110 0.95996 1.21322 0.94510 0.93252 0.98170 1.20152 1.00971 0.94874 0.95426 1.20717 1.02027 1.00906 0.93195 0.88618 0.93348 0.93301 0.91204 0.90671 0.90983 0.84011 0.90219 0.91336 0.92658 0.96020 0.92061 0.93559 0.95961 0.88520 0.92335 0.91428 0.83716 0.91169 0.90846 0.90740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.20 11.13 101.05 1.12 1.33 16 2 O -0.33 -2.98 8.47 -18.82 -0.16 -3.14 16 3 C 0.12 1.23 5.67 -39.01 -0.22 1.01 16 4 C -0.11 -1.15 5.89 -104.54 -0.62 -1.77 16 5 C -0.11 -0.83 9.78 36.01 0.35 -0.48 16 6 C -0.05 -0.59 9.23 -39.20 -0.36 -0.95 16 7 C -0.12 -1.55 5.87 -104.98 -0.62 -2.17 16 8 C 0.50 8.23 7.86 34.49 0.27 8.50 16 9 O -0.51 -9.43 15.60 -19.27 -0.30 -9.73 16 10 O -0.35 -5.99 9.12 -40.63 -0.37 -6.36 16 11 C 0.10 1.87 2.42 -26.69 -0.06 1.80 16 12 C -0.15 -2.76 5.72 -26.61 -0.15 -2.91 16 13 C 0.15 3.22 6.52 -3.71 -0.02 3.19 16 14 N -0.59 -14.95 2.99 -172.33 -0.52 -15.46 16 15 C -0.25 -6.92 9.58 -15.06 -0.14 -7.06 16 16 H 0.07 1.80 7.89 -52.48 -0.41 1.39 16 17 C 0.00 0.05 4.92 -17.43 -0.09 -0.03 16 18 N -0.90 -26.04 11.19 55.49 0.62 -25.42 16 19 Si 0.90 21.53 29.59 -169.99 -5.03 16.50 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 C 0.17 4.15 5.30 -3.71 -0.02 4.13 16 24 C -0.14 -2.65 5.74 -26.61 -0.15 -2.80 16 25 C -0.05 -0.63 9.25 -39.20 -0.36 -0.99 16 26 C -0.11 -1.15 5.89 -104.54 -0.62 -1.77 16 27 C -0.11 -0.86 9.78 36.00 0.35 -0.51 16 28 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.54 7.52 -51.93 -0.39 0.15 16 33 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 34 H 0.14 1.60 7.64 -52.48 -0.40 1.20 16 35 H 0.08 1.60 7.16 -51.93 -0.37 1.23 16 36 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 37 H 0.05 0.98 8.14 -51.92 -0.42 0.56 16 38 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 1.28 7.93 -51.93 -0.41 0.86 16 40 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 41 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.10 2.54 6.07 -51.93 -0.31 2.23 16 43 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 45 H 0.15 1.58 7.60 -52.49 -0.40 1.18 16 46 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 48 H 0.07 0.55 7.52 -51.93 -0.39 0.16 16 LS Contribution 392.22 15.07 5.91 5.91 Total: -1.00 -31.29 392.22 -8.90 -40.19 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -7.72 Total: -1.00 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: -1.34 Total: -1.48 kcal Atomic # 7 Polarization: -40.99 SS G_CDS: 0.11 Total: -40.88 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: -0.83 Total: -19.23 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.29 -8.90 -40.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773800170.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.891 kcal (2) G-P(sol) polarization free energy of solvation -31.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds