Wall clock time and date at job start Tue Mar 31 2020 17:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35706 * 116.99640 * 2 1 4 4 C 1.39011 * 119.90552 * 89.99765 * 3 2 1 5 5 C 1.50700 * 119.95529 * 359.97438 * 4 3 2 6 6 C 1.37683 * 120.09339 * 179.97438 * 4 3 2 7 7 C 1.39793 * 119.90577 * 359.97438 * 6 4 3 8 8 C 1.47459 * 120.09511 * 180.02562 * 7 6 4 9 9 O 1.21506 * 119.99940 * 359.97438 * 8 7 6 10 10 O 1.34750 * 120.00261 * 179.97438 * 8 7 6 11 11 C 1.45205 * 116.99946 * 179.97438 * 10 8 7 12 12 C 1.53043 * 109.46004 * 270.02347 * 11 10 8 13 13 C 1.53191 * 109.31223 * 178.60289 * 12 11 10 14 14 N 1.46925 * 108.76301 * 54.65705 * 13 12 11 15 15 C 1.36934 * 120.62952 * 126.40767 * 14 13 12 16 16 H 1.08004 * 119.99787 * 331.82967 * 15 14 13 17 17 C 1.38809 * 120.00274 * 151.82609 * 15 14 13 18 18 N 1.31615 * 119.99866 * 343.06743 * 17 15 14 19 19 Si 1.86801 * 120.00156 * 163.06741 * 17 15 14 20 20 H 1.48501 * 109.46924 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.47160 * 120.00117 * 19 17 15 22 22 H 1.48491 * 109.47357 * 240.00115 * 19 17 15 23 23 C 1.46927 * 118.74043 * 306.38340 * 14 13 12 24 24 C 1.53037 * 109.45754 * 149.97485 * 11 10 8 25 25 C 1.39798 * 119.81196 * 359.97438 * 7 6 4 26 26 C 1.37677 * 119.90735 * 0.02794 * 25 7 6 27 27 C 1.50696 * 119.95480 * 180.02562 * 26 25 7 28 28 H 1.09006 * 109.46627 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47369 * 300.00019 * 1 2 3 30 30 H 1.09000 * 109.47214 * 60.00266 * 1 2 3 31 31 H 1.09001 * 109.47241 * 270.01990 * 5 4 3 32 32 H 1.08998 * 109.46945 * 30.02303 * 5 4 3 33 33 H 1.09000 * 109.47143 * 150.02390 * 5 4 3 34 34 H 1.08003 * 120.04887 * 179.69819 * 6 4 3 35 35 H 1.08990 * 109.45908 * 30.00031 * 11 10 8 36 36 H 1.08997 * 109.49848 * 298.57321 * 12 11 10 37 37 H 1.09007 * 109.49717 * 58.66827 * 12 11 10 38 38 H 1.09004 * 109.59595 * 294.87013 * 13 12 11 39 39 H 1.08998 * 109.70286 * 174.51360 * 13 12 11 40 40 H 0.97004 * 119.99949 * 179.97438 * 18 17 15 41 41 H 1.08996 * 109.58602 * 293.82467 * 23 14 13 42 42 H 1.08994 * 109.70185 * 173.46658 * 23 14 13 43 43 H 1.09003 * 109.49696 * 301.33728 * 24 11 10 44 44 H 1.08997 * 109.50084 * 61.42956 * 24 11 10 45 45 H 1.08000 * 120.04232 * 180.02562 * 25 7 6 46 46 H 1.08997 * 109.47044 * 269.97505 * 27 26 25 47 47 H 1.09003 * 109.47085 * 29.96980 * 27 26 25 48 48 H 1.09000 * 109.47561 * 149.97360 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2092 0.0000 4 6 2.3596 1.8268 1.2050 5 6 2.0155 1.1528 2.5083 6 6 2.9850 3.0533 1.2095 7 6 3.3042 3.6774 0.0000 8 6 3.9746 4.9908 0.0000 9 8 4.2499 5.5323 1.0523 10 8 4.2819 5.5904 -1.1670 11 6 4.9406 6.8822 -1.0909 12 6 3.8863 7.9913 -1.0653 13 6 4.5835 9.3505 -0.9499 14 7 5.5622 9.4736 -2.0389 15 6 5.5399 10.5555 -2.8779 16 1 4.6107 11.0720 -3.0685 17 6 6.7115 10.9885 -3.4834 18 7 7.8777 10.5963 -3.0161 19 14 6.6330 12.1279 -4.9617 20 1 5.2137 12.4190 -5.2874 21 1 7.3384 13.3963 -4.6470 22 1 7.2844 11.4747 -6.1253 23 6 6.5655 8.4140 -2.2101 24 6 5.8460 7.0654 -2.3110 25 6 2.9870 3.0522 -1.2095 26 6 2.3615 1.8258 -1.2050 27 6 2.0197 1.1507 -2.5082 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.0169 1.4569 2.8221 32 1 2.0412 0.0712 2.3758 33 1 2.7396 1.4430 3.2696 34 1 3.2247 3.5347 2.1462 35 1 5.5409 6.9308 -0.1826 36 1 3.3017 7.9589 -1.9847 37 1 3.2271 7.8470 -0.2092 38 1 5.0948 9.4187 0.0104 39 1 3.8464 10.1495 -1.0289 40 1 8.6964 10.8986 -3.4395 41 1 7.2384 8.4059 -1.3527 42 1 7.1366 8.5925 -3.1211 43 1 6.5819 6.2618 -2.3418 44 1 5.2429 7.0418 -3.2186 45 1 3.2323 3.5308 -2.1461 46 1 1.0216 1.4545 -2.8238 47 1 2.7450 1.4402 -3.2686 48 1 2.0451 0.0692 -2.3749 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000773800170.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:53 Heat of formation + Delta-G solvation = -103.339112 kcal Electronic energy + Delta-G solvation = -28578.549656 eV Core-core repulsion = 24598.466623 eV Total energy + Delta-G solvation = -3980.083032 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.92393 -41.07889 -39.21635 -38.18960 -37.30168 -34.78148 -34.57567 -32.76465 -32.06830 -31.44030 -28.99547 -27.87415 -27.56942 -26.97560 -25.19146 -23.99896 -23.56797 -22.07396 -21.49007 -21.04604 -18.92578 -18.88773 -18.73832 -17.76172 -17.30694 -17.13634 -16.80093 -16.61794 -15.83180 -15.43374 -15.13208 -15.06596 -14.89603 -14.84105 -14.64359 -14.39469 -14.20483 -14.18740 -14.07247 -13.97333 -13.31727 -13.16066 -13.08548 -12.86454 -12.79265 -12.65661 -12.61178 -12.50316 -12.40576 -12.33241 -12.17303 -11.96324 -11.88805 -11.65662 -11.42332 -11.10292 -10.96948 -10.58298 -9.78061 -9.74144 -8.77600 -7.91419 -5.37673 -0.56435 0.17304 1.29657 1.46530 1.49256 1.53714 1.60156 2.36553 2.49992 2.81052 3.24887 3.43373 3.58084 3.64626 3.67413 3.76585 3.82443 4.05426 4.12541 4.18761 4.31689 4.34771 4.45080 4.47900 4.53142 4.54474 4.58154 4.70390 4.71774 4.74516 4.77461 4.81088 4.83336 4.85527 4.93181 5.02000 5.10122 5.15266 5.18895 5.23687 5.27923 5.35706 5.36792 5.43534 5.52872 5.61226 5.66314 6.35177 6.41672 6.61913 7.09863 7.77968 8.31382 9.16605 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.025681 B = 0.002246 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.054203 B =12464.890543 C =13021.343884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.342 6.342 3 C 0.127 3.873 4 C -0.116 4.116 5 C -0.109 4.109 6 C -0.055 4.055 7 C -0.139 4.139 8 C 0.505 3.495 9 O -0.536 6.536 10 O -0.346 6.346 11 C 0.106 3.894 12 C -0.132 4.132 13 C 0.147 3.853 14 N -0.610 5.610 15 C -0.264 4.264 16 H 0.070 0.930 17 C -0.050 4.050 18 N -0.936 5.936 19 Si 0.971 3.029 20 H -0.266 1.266 21 H -0.293 1.293 22 H -0.288 1.288 23 C 0.180 3.820 24 C -0.121 4.121 25 C -0.056 4.056 26 C -0.117 4.117 27 C -0.110 4.110 28 H 0.118 0.882 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.140 0.860 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.014 0.986 39 H 0.067 0.933 40 H 0.252 0.748 41 H 0.000 1.000 42 H 0.070 0.930 43 H 0.077 0.923 44 H 0.071 0.929 45 H 0.149 0.851 46 H 0.084 0.916 47 H 0.078 0.922 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.438 -24.458 5.320 29.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.259 6.259 3 C 0.083 3.917 4 C -0.116 4.116 5 C -0.165 4.165 6 C -0.074 4.074 7 C -0.140 4.140 8 C 0.352 3.648 9 O -0.428 6.428 10 O -0.263 6.263 11 C 0.051 3.949 12 C -0.172 4.172 13 C 0.021 3.979 14 N -0.334 5.334 15 C -0.394 4.394 16 H 0.088 0.912 17 C -0.245 4.245 18 N -0.581 5.581 19 Si 0.799 3.201 20 H -0.190 1.190 21 H -0.220 1.220 22 H -0.214 1.214 23 C 0.054 3.946 24 C -0.160 4.160 25 C -0.074 4.074 26 C -0.117 4.117 27 C -0.166 4.166 28 H 0.136 0.864 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.103 0.897 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.158 0.842 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.032 0.968 39 H 0.086 0.914 40 H 0.061 0.939 41 H 0.018 0.982 42 H 0.088 0.912 43 H 0.095 0.905 44 H 0.089 0.911 45 H 0.166 0.834 46 H 0.102 0.898 47 H 0.097 0.903 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -16.134 -24.386 5.549 29.762 hybrid contribution 0.559 1.338 -0.378 1.499 sum -15.575 -23.048 5.171 28.294 Atomic orbital electron populations 1.23262 0.76467 1.05115 1.01592 1.85880 1.21818 1.23907 1.94330 1.18762 0.95735 0.85787 0.91436 1.20328 1.00365 0.94123 0.96821 1.20759 1.02885 1.00962 0.91921 1.21103 0.95188 0.93895 0.97164 1.19169 1.06150 0.92696 0.96015 1.21551 0.75656 0.85818 0.81806 1.90806 1.52211 1.66260 1.33494 1.86591 1.70899 1.35246 1.33540 1.22676 0.93677 0.78660 0.99849 1.22277 0.97582 0.95006 1.02290 1.20955 0.91946 0.94933 0.90082 1.44385 1.34961 1.21415 1.32610 1.19553 0.93145 1.06809 1.19916 0.91217 1.25855 0.94965 1.00662 1.03037 1.70177 0.97134 1.49388 1.41443 0.85162 0.77911 0.77863 0.79211 1.18997 1.21994 1.21410 1.20587 0.89856 0.84416 0.99702 1.22182 0.98203 0.99078 0.96503 1.21377 0.94592 0.93820 0.97599 1.20404 1.00252 0.94383 0.96676 1.20767 1.02956 1.00888 0.92012 0.86374 0.92747 0.92749 0.89725 0.90141 0.90451 0.84249 0.91692 0.90868 0.91326 0.96826 0.91420 0.93887 0.98173 0.91192 0.90485 0.91074 0.83362 0.89761 0.90284 0.90292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.13 113.37 1.26 1.50 16 2 O -0.34 -5.18 8.47 -90.26 -0.76 -5.94 16 3 C 0.13 2.30 5.67 22.64 0.13 2.43 16 4 C -0.12 -2.15 5.89 -19.81 -0.12 -2.27 16 5 C -0.11 -1.39 9.78 71.24 0.70 -0.70 16 6 C -0.06 -1.25 9.23 22.51 0.21 -1.05 16 7 C -0.14 -3.61 5.87 -20.09 -0.12 -3.73 16 8 C 0.50 16.41 7.86 70.25 0.55 16.96 16 9 O -0.54 -20.18 15.60 19.82 0.31 -19.87 16 10 O -0.35 -11.58 9.12 -56.60 -0.52 -12.10 16 11 C 0.11 3.96 2.42 30.62 0.07 4.04 16 12 C -0.13 -4.92 5.72 30.67 0.18 -4.75 16 13 C 0.15 6.37 6.52 86.36 0.56 6.93 16 14 N -0.61 -31.23 2.99 -699.12 -2.09 -33.32 16 15 C -0.26 -14.55 9.58 84.03 0.81 -13.75 16 16 H 0.07 3.72 7.89 -2.91 -0.02 3.70 16 17 C -0.05 -2.77 4.92 84.86 0.42 -2.35 16 18 N -0.94 -55.26 11.19 21.65 0.24 -55.01 16 19 Si 0.97 44.58 29.59 68.60 2.03 46.61 16 20 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 21 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 22 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 23 C 0.18 8.84 5.30 86.36 0.46 9.29 16 24 C -0.12 -4.72 5.74 30.67 0.18 -4.54 16 25 C -0.06 -1.21 9.25 22.51 0.21 -1.00 16 26 C -0.12 -2.14 5.89 -19.81 -0.12 -2.25 16 27 C -0.11 -1.42 9.78 71.23 0.70 -0.72 16 28 H 0.12 0.46 8.14 -2.38 -0.02 0.44 16 29 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.08 0.96 7.52 -2.39 -0.02 0.94 16 33 H 0.08 0.91 8.08 -2.39 -0.02 0.89 16 34 H 0.14 3.15 7.64 -2.91 -0.02 3.12 16 35 H 0.06 2.65 7.16 -2.39 -0.02 2.63 16 36 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 37 H 0.07 2.37 8.14 -2.38 -0.02 2.36 16 38 H 0.01 0.62 8.14 -2.38 -0.02 0.60 16 39 H 0.07 2.81 7.93 -2.39 -0.02 2.79 16 40 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 41 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 42 H 0.07 3.80 6.07 -2.39 -0.01 3.78 16 43 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 44 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 45 H 0.15 3.04 7.60 -2.91 -0.02 3.02 16 46 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 47 H 0.08 0.94 8.08 -2.39 -0.02 0.92 16 48 H 0.08 0.96 7.52 -2.39 -0.02 0.94 16 Total: -1.00 -67.64 392.22 6.22 -61.42 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: 0.94 Total: 14.16 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: 6.07 Total: 4.05 kcal Atomic # 7 Polarization: -86.48 SS G_CDS: -1.85 Total: -88.33 kcal Atomic # 8 Polarization: -36.94 SS G_CDS: -0.97 Total: -37.91 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -67.64 6.22 -61.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773800170.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.919 kcal (2) G-P(sol) polarization free energy of solvation -67.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds