Wall clock time and date at job start Tue Mar 31 2020 17:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42896 * 114.00255 * 2 1 4 4 C 1.52993 * 109.47170 * 180.02562 * 3 2 1 5 5 C 1.53006 * 109.46283 * 60.02743 * 4 3 2 6 6 C 1.53037 * 109.46148 * 179.97438 * 4 3 2 7 7 C 1.53197 * 109.31625 * 181.38272 * 6 4 3 8 8 N 1.46924 * 108.77502 * 305.36521 * 7 6 4 9 9 C 1.34769 * 120.63301 * 233.58080 * 8 7 6 10 10 O 1.21598 * 119.99756 * 355.94476 * 9 8 7 11 11 C 1.47539 * 120.00216 * 175.94283 * 9 8 7 12 12 C 1.39663 * 120.19523 * 54.96982 * 11 9 8 13 13 C 1.37831 * 119.91698 * 179.72627 * 12 11 9 14 14 C 1.38572 * 120.32384 * 0.02562 * 13 12 11 15 15 C 1.38032 * 120.40169 * 0.02562 * 14 13 12 16 16 C 1.38835 * 120.07013 * 359.95005 * 15 14 13 17 17 O 1.35520 * 120.15577 * 180.02562 * 16 15 14 18 18 C 1.34813 * 117.00372 * 5.57056 * 17 16 15 19 19 H 1.08003 * 119.99882 * 5.33467 * 18 17 16 20 20 C 1.38701 * 119.99787 * 185.34273 * 18 17 16 21 21 N 1.31512 * 120.00169 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99564 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.46924 * 89.99953 * 22 20 18 24 24 H 1.48505 * 109.46982 * 209.99755 * 22 20 18 25 25 H 1.48496 * 109.47254 * 329.99740 * 22 20 18 26 26 C 1.46931 * 118.73565 * 53.86102 * 8 7 6 27 27 C 1.53048 * 109.45956 * 300.06790 * 4 3 2 28 28 H 1.08999 * 109.47291 * 299.99822 * 1 2 3 29 29 H 1.09007 * 109.47392 * 60.00407 * 1 2 3 30 30 H 1.09002 * 109.47849 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47165 * 59.99968 * 3 2 1 32 32 H 1.09000 * 109.47013 * 299.99762 * 3 2 1 33 33 H 1.08997 * 109.47266 * 179.97438 * 5 4 3 34 34 H 1.09000 * 109.46945 * 299.97286 * 5 4 3 35 35 H 1.08996 * 109.46704 * 59.97015 * 5 4 3 36 36 H 1.09001 * 109.49927 * 61.43363 * 6 4 3 37 37 H 1.09004 * 109.52605 * 301.35152 * 6 4 3 38 38 H 1.08996 * 109.58807 * 185.57477 * 7 6 4 39 39 H 1.09004 * 109.58012 * 65.15408 * 7 6 4 40 40 H 1.08000 * 120.04223 * 359.74897 * 12 11 9 41 41 H 1.08000 * 119.83849 * 179.97438 * 13 12 11 42 42 H 1.07992 * 119.80059 * 179.97438 * 14 13 12 43 43 H 1.08001 * 119.96221 * 179.97438 * 15 14 13 44 44 H 0.96998 * 120.00317 * 179.97438 * 21 20 18 45 45 H 1.09001 * 109.58934 * 65.92292 * 26 8 7 46 46 H 1.08998 * 109.58363 * 186.35322 * 26 8 7 47 47 H 1.08997 * 109.49540 * 298.56548 * 27 4 3 48 48 H 1.08994 * 109.49338 * 58.63337 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1845 -0.0006 5 6 3.9861 0.4260 -1.2507 6 6 4.1576 2.5827 -0.0013 7 6 5.6841 2.4580 -0.0368 8 7 6.1151 1.6062 1.0801 9 6 7.0467 2.0378 1.9531 10 8 7.5923 3.1105 1.7790 11 6 7.4044 1.2089 3.1200 12 6 7.8232 -0.1115 2.9419 13 6 8.1614 -0.8789 4.0357 14 6 8.0876 -0.3471 5.3132 15 6 7.6745 0.9559 5.5046 16 6 7.3304 1.7439 4.4146 17 8 6.9250 3.0236 4.6005 18 6 6.9873 3.5091 5.8566 19 1 7.4279 2.9152 6.6438 20 6 6.4854 4.7711 6.1380 21 7 5.9492 5.4943 5.1794 22 14 6.5712 5.4434 7.8788 23 1 7.8465 6.1817 8.0620 24 1 5.4288 6.3635 8.1109 25 1 6.5062 4.3196 8.8473 26 6 5.5157 0.2724 1.2235 27 6 3.9870 0.4233 1.2479 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3635 -1.0276 -0.0005 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 5.0727 0.3402 -1.2515 34 1 3.5431 -0.5698 -1.2508 35 1 3.6637 0.9673 -2.1400 36 1 3.8571 3.1151 0.9011 37 1 3.8171 3.1326 -0.8786 38 1 6.1339 3.4458 0.0623 39 1 5.9919 2.0070 -0.9803 40 1 7.8822 -0.5306 1.9483 41 1 8.4846 -1.8999 3.8965 42 1 8.3542 -0.9561 6.1642 43 1 7.6192 1.3630 6.5034 44 1 5.5979 6.3767 5.3763 45 1 5.8101 -0.3531 0.3807 46 1 5.8543 -0.1821 2.1545 47 1 3.6881 0.9756 2.1387 48 1 3.5246 -0.5636 1.2593 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000773983833.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:42 Heat of formation + Delta-G solvation = -80.291942 kcal Electronic energy + Delta-G solvation = -29941.681652 eV Core-core repulsion = 25962.598020 eV Total energy + Delta-G solvation = -3979.083632 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.29533 -39.13064 -38.03724 -36.78222 -36.36439 -33.63725 -32.35661 -31.37551 -30.10271 -28.99001 -28.04220 -27.37731 -25.98410 -25.41126 -23.67558 -23.23018 -22.00478 -21.44256 -19.70865 -18.17319 -18.04492 -17.07538 -16.45848 -16.38348 -15.91398 -15.57870 -15.30618 -14.91760 -14.72076 -14.38559 -14.30846 -14.02682 -13.75633 -13.65626 -13.48376 -13.41914 -12.88501 -12.77477 -12.41617 -12.15009 -12.05346 -11.85227 -11.73404 -11.62871 -11.46224 -11.32706 -11.15729 -11.00174 -10.87682 -10.79216 -10.60630 -10.46424 -10.32815 -10.23363 -9.74576 -9.61841 -9.01107 -8.87307 -8.21049 -8.11458 -7.32724 -6.47851 -4.07067 1.84220 2.29452 3.11082 3.12175 3.16529 3.39378 3.57232 3.69682 3.92621 4.48419 4.69469 4.73394 4.87315 5.07473 5.10328 5.12267 5.17579 5.19454 5.27108 5.34724 5.37764 5.46939 5.48629 5.51046 5.54721 5.57247 5.69325 5.75210 5.82317 5.87110 5.98149 6.03760 6.05664 6.12913 6.16295 6.18225 6.25694 6.37233 6.53136 6.56914 6.66723 6.95120 7.01529 7.04254 7.06379 7.25593 7.28583 7.68296 7.90328 7.99332 8.93375 8.96012 9.63739 10.68201 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010837 B = 0.003853 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2583.148724 B = 7265.742620 C = 8270.601194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.386 6.386 3 C 0.071 3.929 4 C -0.056 4.056 5 C -0.140 4.140 6 C -0.124 4.124 7 C 0.118 3.882 8 N -0.614 5.614 9 C 0.579 3.421 10 O -0.524 6.524 11 C -0.213 4.213 12 C -0.045 4.045 13 C -0.223 4.223 14 C -0.056 4.056 15 C -0.234 4.234 16 C 0.187 3.813 17 O -0.151 6.151 18 C -0.397 4.397 19 H 0.094 0.906 20 C 0.044 3.956 21 N -0.847 5.847 22 Si 0.942 3.058 23 H -0.272 1.272 24 H -0.277 1.277 25 H -0.266 1.266 26 C 0.103 3.897 27 C -0.120 4.120 28 H 0.040 0.960 29 H 0.037 0.963 30 H 0.083 0.917 31 H 0.050 0.950 32 H 0.047 0.953 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.050 0.950 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.092 0.908 39 H 0.062 0.938 40 H 0.115 0.885 41 H 0.111 0.889 42 H 0.110 0.890 43 H 0.132 0.868 44 H 0.271 0.729 45 H 0.064 0.936 46 H 0.097 0.903 47 H 0.068 0.932 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.467 -11.631 -9.528 16.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.304 6.304 3 C -0.005 4.005 4 C -0.056 4.056 5 C -0.197 4.197 6 C -0.163 4.163 7 C -0.005 4.005 8 N -0.350 5.350 9 C 0.369 3.631 10 O -0.399 6.399 11 C -0.218 4.218 12 C -0.064 4.064 13 C -0.242 4.242 14 C -0.075 4.075 15 C -0.253 4.253 16 C 0.130 3.870 17 O -0.051 6.051 18 C -0.473 4.473 19 H 0.111 0.889 20 C -0.163 4.163 21 N -0.480 5.480 22 Si 0.766 3.234 23 H -0.197 1.197 24 H -0.202 1.202 25 H -0.191 1.191 26 C -0.020 4.020 27 C -0.158 4.158 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.102 0.898 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.111 0.889 39 H 0.081 0.919 40 H 0.133 0.867 41 H 0.129 0.871 42 H 0.128 0.872 43 H 0.149 0.851 44 H 0.081 0.919 45 H 0.082 0.918 46 H 0.115 0.885 47 H 0.086 0.914 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.258 -10.741 -9.800 16.250 hybrid contribution -0.360 0.526 0.972 1.162 sum -7.618 -10.215 -8.827 15.502 Atomic orbital electron populations 1.22707 0.81495 1.02478 0.99817 1.87857 1.19160 1.28070 1.95361 1.22608 0.93468 0.84394 1.00052 1.20534 0.92339 0.96067 0.96648 1.21895 1.01380 1.00482 0.95979 1.21937 0.95859 0.95570 1.02914 1.21439 0.93516 0.96779 0.88736 1.47965 1.41350 1.16909 1.28741 1.18199 0.78383 0.85196 0.81309 1.90768 1.52423 1.22486 1.74185 1.18721 1.16470 0.95521 0.91087 1.20716 0.96065 0.91338 0.98241 1.20479 1.11201 0.99909 0.92585 1.20884 0.95657 0.94409 0.96531 1.21143 1.09778 0.95165 0.99223 1.19192 0.90892 0.85276 0.91663 1.84012 1.69857 1.19964 1.31301 1.21395 1.41095 1.00886 0.83905 0.88877 1.25341 0.95705 0.95352 0.99879 1.70061 1.34947 1.10761 1.32192 0.85709 0.78408 0.79131 0.80168 1.19717 1.20190 1.19077 1.22005 0.92848 0.84201 1.02912 1.21978 0.95477 1.01153 0.97200 0.94162 0.94399 0.89831 0.93171 0.93464 0.92108 0.91899 0.93097 0.90854 0.90984 0.88935 0.91937 0.86673 0.87140 0.87158 0.85073 0.91885 0.91791 0.88532 0.91365 0.90236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.39 -4.39 9.33 -35.23 -0.33 -4.72 16 3 C 0.07 0.80 4.80 37.15 0.18 0.98 16 4 C -0.06 -0.66 0.60 -154.46 -0.09 -0.76 16 5 C -0.14 -1.46 7.57 37.16 0.28 -1.18 16 6 C -0.12 -1.65 4.91 -26.61 -0.13 -1.78 16 7 C 0.12 1.81 5.95 -3.71 -0.02 1.79 16 8 N -0.61 -10.81 2.97 -173.72 -0.52 -11.33 16 9 C 0.58 13.06 6.84 -12.47 -0.09 12.97 16 10 O -0.52 -14.11 16.22 3.06 0.05 -14.06 16 11 C -0.21 -4.68 4.87 -104.81 -0.51 -5.19 16 12 C -0.04 -0.79 7.45 -39.20 -0.29 -1.08 16 13 C -0.22 -3.65 10.02 -39.61 -0.40 -4.05 16 14 C -0.06 -0.99 10.03 -39.53 -0.40 -1.39 16 15 C -0.23 -5.02 9.13 -39.44 -0.36 -5.38 16 16 C 0.19 4.63 6.65 -38.60 -0.26 4.38 16 17 O -0.15 -4.43 8.98 -1.41 -0.01 -4.45 16 18 C -0.40 -11.21 9.44 30.90 0.29 -10.92 16 19 H 0.09 2.40 5.29 -52.48 -0.28 2.12 16 20 C 0.04 1.21 5.49 -17.52 -0.10 1.11 16 21 N -0.85 -25.27 13.67 55.48 0.76 -24.51 16 22 Si 0.94 20.56 29.55 -169.99 -5.02 15.54 16 23 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 24 H -0.28 -5.90 7.11 56.52 0.40 -5.49 16 25 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 26 C 0.10 1.47 5.11 -3.48 -0.02 1.45 16 27 C -0.12 -1.61 4.80 -26.38 -0.13 -1.73 16 28 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.64 4.96 -51.93 -0.26 0.38 16 34 H 0.06 0.66 7.68 -51.93 -0.40 0.26 16 35 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.09 1.66 7.03 -51.93 -0.36 1.29 16 39 H 0.06 0.81 6.69 -51.93 -0.35 0.46 16 40 H 0.12 1.69 7.41 -52.49 -0.39 1.30 16 41 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 42 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 43 H 0.13 2.79 5.71 -52.49 -0.30 2.49 16 44 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 45 H 0.06 0.76 6.69 -51.93 -0.35 0.42 16 46 H 0.10 1.46 4.76 -51.93 -0.25 1.21 16 47 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 48 H 0.08 0.99 7.64 -51.93 -0.40 0.59 16 LS Contribution 378.28 15.07 5.70 5.70 Total: -1.00 -34.12 378.28 -7.40 -41.52 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -7.11 Total: 5.70 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: -0.92 Total: -9.40 kcal Atomic # 7 Polarization: -36.08 SS G_CDS: 0.24 Total: -35.84 kcal Atomic # 8 Polarization: -22.93 SS G_CDS: -0.29 Total: -23.22 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.12 -7.40 -41.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773983833.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.771 kcal (2) G-P(sol) polarization free energy of solvation -34.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds