Wall clock time and date at job start Tue Mar 31 2020 17:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42896 * 114.00255 * 2 1 4 4 C 1.52993 * 109.47170 * 180.02562 * 3 2 1 5 5 C 1.53006 * 109.46283 * 60.02743 * 4 3 2 6 6 C 1.53037 * 109.46148 * 179.97438 * 4 3 2 7 7 C 1.53197 * 109.31625 * 181.38272 * 6 4 3 8 8 N 1.46924 * 108.77502 * 305.36521 * 7 6 4 9 9 C 1.34769 * 120.63301 * 233.58080 * 8 7 6 10 10 O 1.21598 * 119.99756 * 355.94476 * 9 8 7 11 11 C 1.47539 * 120.00216 * 175.94283 * 9 8 7 12 12 C 1.39663 * 120.19523 * 54.96982 * 11 9 8 13 13 C 1.37831 * 119.91698 * 179.72627 * 12 11 9 14 14 C 1.38572 * 120.32384 * 0.02562 * 13 12 11 15 15 C 1.38032 * 120.40169 * 0.02562 * 14 13 12 16 16 C 1.38835 * 120.07013 * 359.95005 * 15 14 13 17 17 O 1.35520 * 120.15577 * 180.02562 * 16 15 14 18 18 C 1.34813 * 117.00372 * 5.57056 * 17 16 15 19 19 H 1.08003 * 119.99882 * 5.33467 * 18 17 16 20 20 C 1.38701 * 119.99787 * 185.34273 * 18 17 16 21 21 N 1.31512 * 120.00169 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99564 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.46924 * 89.99953 * 22 20 18 24 24 H 1.48505 * 109.46982 * 209.99755 * 22 20 18 25 25 H 1.48496 * 109.47254 * 329.99740 * 22 20 18 26 26 C 1.46931 * 118.73565 * 53.86102 * 8 7 6 27 27 C 1.53048 * 109.45956 * 300.06790 * 4 3 2 28 28 H 1.08999 * 109.47291 * 299.99822 * 1 2 3 29 29 H 1.09007 * 109.47392 * 60.00407 * 1 2 3 30 30 H 1.09002 * 109.47849 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47165 * 59.99968 * 3 2 1 32 32 H 1.09000 * 109.47013 * 299.99762 * 3 2 1 33 33 H 1.08997 * 109.47266 * 179.97438 * 5 4 3 34 34 H 1.09000 * 109.46945 * 299.97286 * 5 4 3 35 35 H 1.08996 * 109.46704 * 59.97015 * 5 4 3 36 36 H 1.09001 * 109.49927 * 61.43363 * 6 4 3 37 37 H 1.09004 * 109.52605 * 301.35152 * 6 4 3 38 38 H 1.08996 * 109.58807 * 185.57477 * 7 6 4 39 39 H 1.09004 * 109.58012 * 65.15408 * 7 6 4 40 40 H 1.08000 * 120.04223 * 359.74897 * 12 11 9 41 41 H 1.08000 * 119.83849 * 179.97438 * 13 12 11 42 42 H 1.07992 * 119.80059 * 179.97438 * 14 13 12 43 43 H 1.08001 * 119.96221 * 179.97438 * 15 14 13 44 44 H 0.96998 * 120.00317 * 179.97438 * 21 20 18 45 45 H 1.09001 * 109.58934 * 65.92292 * 26 8 7 46 46 H 1.08998 * 109.58363 * 186.35322 * 26 8 7 47 47 H 1.08997 * 109.49540 * 298.56548 * 27 4 3 48 48 H 1.08994 * 109.49338 * 58.63337 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1845 -0.0006 5 6 3.9861 0.4260 -1.2507 6 6 4.1576 2.5827 -0.0013 7 6 5.6841 2.4580 -0.0368 8 7 6.1151 1.6062 1.0801 9 6 7.0467 2.0378 1.9531 10 8 7.5923 3.1105 1.7790 11 6 7.4044 1.2089 3.1200 12 6 7.8232 -0.1115 2.9419 13 6 8.1614 -0.8789 4.0357 14 6 8.0876 -0.3471 5.3132 15 6 7.6745 0.9559 5.5046 16 6 7.3304 1.7439 4.4146 17 8 6.9250 3.0236 4.6005 18 6 6.9873 3.5091 5.8566 19 1 7.4279 2.9152 6.6438 20 6 6.4854 4.7711 6.1380 21 7 5.9492 5.4943 5.1794 22 14 6.5712 5.4434 7.8788 23 1 7.8465 6.1817 8.0620 24 1 5.4288 6.3635 8.1109 25 1 6.5062 4.3196 8.8473 26 6 5.5157 0.2724 1.2235 27 6 3.9870 0.4233 1.2479 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3635 -1.0276 -0.0005 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 5.0727 0.3402 -1.2515 34 1 3.5431 -0.5698 -1.2508 35 1 3.6637 0.9673 -2.1400 36 1 3.8571 3.1151 0.9011 37 1 3.8171 3.1326 -0.8786 38 1 6.1339 3.4458 0.0623 39 1 5.9919 2.0070 -0.9803 40 1 7.8822 -0.5306 1.9483 41 1 8.4846 -1.8999 3.8965 42 1 8.3542 -0.9561 6.1642 43 1 7.6192 1.3630 6.5034 44 1 5.5979 6.3767 5.3763 45 1 5.8101 -0.3531 0.3807 46 1 5.8543 -0.1821 2.1545 47 1 3.6881 0.9756 2.1387 48 1 3.5246 -0.5636 1.2593 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000773983833.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:40 Heat of formation + Delta-G solvation = -103.323498 kcal Electronic energy + Delta-G solvation = -29942.680375 eV Core-core repulsion = 25962.598020 eV Total energy + Delta-G solvation = -3980.082355 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.74565 -40.59811 -39.44525 -38.08801 -37.96785 -34.99039 -34.35755 -32.72075 -31.52404 -30.64192 -29.14353 -28.22080 -27.44125 -26.84462 -25.04554 -24.45990 -23.42391 -23.03316 -21.14759 -19.92357 -19.50133 -18.59062 -18.02602 -17.33429 -17.06974 -16.82632 -16.53067 -16.41655 -16.26238 -15.90972 -15.65278 -15.47115 -15.34534 -15.07028 -14.76144 -14.57635 -14.38580 -14.25693 -13.92786 -13.58687 -13.40215 -13.06975 -12.93075 -12.82995 -12.70973 -12.57859 -12.46872 -12.34204 -12.33493 -12.17196 -12.13937 -11.65357 -11.51156 -11.44092 -11.32537 -10.85642 -10.71396 -10.57075 -9.77520 -9.55699 -9.05859 -8.49890 -6.19532 0.25452 0.69387 1.30641 1.41909 1.49413 1.73541 2.13231 2.15083 2.79010 2.82200 3.13560 3.40126 3.59726 3.68264 3.79577 3.93299 4.08343 4.12013 4.19921 4.27246 4.29639 4.38395 4.40848 4.50151 4.54120 4.60349 4.61040 4.62255 4.71469 4.73386 4.79877 4.86301 4.87478 4.93892 5.00801 5.04505 5.06440 5.13158 5.15706 5.20318 5.30906 5.50133 5.55720 5.57917 5.67717 5.69514 5.93932 6.15529 6.23902 6.42795 6.92096 7.27356 7.74117 8.72534 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010837 B = 0.003853 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2583.148724 B = 7265.742620 C = 8270.601194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.399 6.399 3 C 0.074 3.926 4 C -0.052 4.052 5 C -0.133 4.133 6 C -0.118 4.118 7 C 0.113 3.887 8 N -0.605 5.605 9 C 0.567 3.433 10 O -0.588 6.588 11 C -0.228 4.228 12 C -0.038 4.038 13 C -0.190 4.190 14 C -0.047 4.047 15 C -0.249 4.249 16 C 0.145 3.855 17 O -0.215 6.215 18 C -0.419 4.419 19 H 0.106 0.894 20 C -0.023 4.023 21 N -0.915 5.915 22 Si 1.022 2.978 23 H -0.265 1.265 24 H -0.271 1.271 25 H -0.246 1.246 26 C 0.100 3.900 27 C -0.115 4.115 28 H 0.037 0.963 29 H 0.051 0.949 30 H 0.099 0.901 31 H 0.033 0.967 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.035 0.965 37 H 0.101 0.899 38 H 0.056 0.944 39 H 0.101 0.899 40 H 0.154 0.846 41 H 0.166 0.834 42 H 0.155 0.845 43 H 0.123 0.877 44 H 0.271 0.729 45 H 0.104 0.896 46 H 0.089 0.911 47 H 0.031 0.969 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.394 -16.280 -10.382 20.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.318 6.318 3 C -0.002 4.002 4 C -0.052 4.052 5 C -0.190 4.190 6 C -0.156 4.156 7 C -0.009 4.009 8 N -0.338 5.338 9 C 0.357 3.643 10 O -0.468 6.468 11 C -0.233 4.233 12 C -0.057 4.057 13 C -0.208 4.208 14 C -0.065 4.065 15 C -0.268 4.268 16 C 0.092 3.908 17 O -0.120 6.120 18 C -0.495 4.495 19 H 0.123 0.877 20 C -0.221 4.221 21 N -0.552 5.552 22 Si 0.840 3.160 23 H -0.190 1.190 24 H -0.195 1.195 25 H -0.169 1.169 26 C -0.021 4.021 27 C -0.153 4.153 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.118 0.882 31 H 0.052 0.948 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.054 0.946 37 H 0.119 0.881 38 H 0.074 0.926 39 H 0.118 0.882 40 H 0.171 0.829 41 H 0.183 0.817 42 H 0.172 0.828 43 H 0.141 0.859 44 H 0.080 0.920 45 H 0.122 0.878 46 H 0.107 0.893 47 H 0.050 0.950 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.206 -15.505 -10.680 20.159 hybrid contribution -0.340 1.560 1.059 1.916 sum -7.547 -13.945 -9.620 18.547 Atomic orbital electron populations 1.22892 0.80020 1.03760 1.00372 1.87812 1.20777 1.27749 1.95465 1.22514 0.92841 0.84713 1.00168 1.20485 0.92984 0.94734 0.96982 1.21836 1.01455 1.00567 0.95097 1.21880 0.94393 0.96965 1.02403 1.21631 0.94692 0.95193 0.89383 1.48059 1.39553 1.18293 1.27908 1.18564 0.78994 0.84610 0.82116 1.90722 1.55236 1.25047 1.75790 1.19109 1.16836 0.97398 0.89936 1.21193 0.94284 0.89292 1.00891 1.21167 1.06742 1.01713 0.91172 1.21403 0.93389 0.92738 0.98988 1.21293 1.10654 0.96891 0.98011 1.19899 0.92052 0.84922 0.93975 1.83990 1.73395 1.22733 1.31873 1.21927 1.41515 1.01737 0.84313 0.87664 1.26711 0.95063 0.95358 1.04938 1.70242 1.38237 1.11540 1.35202 0.84563 0.78590 0.78735 0.74119 1.19006 1.19537 1.16913 1.22288 0.93063 0.82584 1.04171 1.21926 0.95020 1.01747 0.96621 0.94419 0.93067 0.88224 0.94838 0.91672 0.91856 0.91263 0.91595 0.94649 0.88112 0.92564 0.88156 0.82867 0.81694 0.82751 0.85888 0.91959 0.87789 0.89259 0.95005 0.88451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 113.37 1.25 1.63 16 2 O -0.40 -8.23 9.33 -148.98 -1.39 -9.62 16 3 C 0.07 1.57 4.80 71.98 0.35 1.92 16 4 C -0.05 -1.16 0.60 -52.15 -0.03 -1.19 16 5 C -0.13 -2.27 7.57 71.98 0.54 -1.73 16 6 C -0.12 -3.20 4.91 30.67 0.15 -3.04 16 7 C 0.11 3.56 5.95 86.36 0.51 4.07 16 8 N -0.61 -21.72 2.97 -821.80 -2.44 -24.15 16 9 C 0.57 26.98 6.84 86.70 0.59 27.57 16 10 O -0.59 -34.48 16.22 -1.90 -0.03 -34.51 16 11 C -0.23 -10.23 4.87 -19.99 -0.10 -10.33 16 12 C -0.04 -1.22 7.45 22.52 0.17 -1.06 16 13 C -0.19 -5.19 10.02 22.25 0.22 -4.97 16 14 C -0.05 -1.48 10.03 22.30 0.22 -1.26 16 15 C -0.25 -10.76 9.13 22.36 0.20 -10.56 16 16 C 0.14 7.54 6.65 22.91 0.15 7.69 16 17 O -0.22 -13.80 8.98 -17.91 -0.16 -13.96 16 18 C -0.42 -25.50 9.44 67.93 0.64 -24.86 16 19 H 0.11 5.77 5.29 -2.91 -0.02 5.76 16 20 C -0.02 -1.34 5.49 84.85 0.47 -0.88 16 21 N -0.92 -59.55 13.67 21.62 0.30 -59.26 16 22 Si 1.02 44.44 29.55 68.60 2.03 46.47 16 23 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 24 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 25 H -0.25 -9.68 7.11 99.48 0.71 -8.98 16 26 C 0.10 2.68 5.11 86.51 0.44 3.12 16 27 C -0.11 -3.00 4.80 30.82 0.15 -2.85 16 28 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 30 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.06 1.05 4.96 -2.39 -0.01 1.04 16 34 H 0.07 1.15 7.68 -2.39 -0.02 1.13 16 35 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.06 2.20 7.03 -2.39 -0.02 2.18 16 39 H 0.10 2.41 6.69 -2.38 -0.02 2.40 16 40 H 0.15 3.73 7.41 -2.91 -0.02 3.71 16 41 H 0.17 2.94 8.06 -2.91 -0.02 2.92 16 42 H 0.15 3.55 8.06 -2.91 -0.02 3.53 16 43 H 0.12 5.39 5.71 -2.91 -0.02 5.37 16 44 H 0.27 16.17 8.31 -92.71 -0.77 15.40 16 45 H 0.10 2.02 6.69 -2.39 -0.02 2.01 16 46 H 0.09 2.52 4.76 -2.39 -0.01 2.51 16 47 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 48 H 0.10 2.21 7.64 -2.39 -0.02 2.19 16 Total: -1.00 -87.23 378.28 5.21 -82.02 By element: Atomic # 1 Polarization: 28.76 SS G_CDS: 0.97 Total: 29.72 kcal Atomic # 6 Polarization: -22.65 SS G_CDS: 5.94 Total: -16.71 kcal Atomic # 7 Polarization: -81.27 SS G_CDS: -2.14 Total: -83.41 kcal Atomic # 8 Polarization: -56.51 SS G_CDS: -1.58 Total: -58.09 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -87.23 5.21 -82.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773983833.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.302 kcal (2) G-P(sol) polarization free energy of solvation -87.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds