Wall clock time and date at job start Tue Mar 31 2020 18:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53004 * 109.47120 * 2 1 4 4 C 1.52995 * 109.47178 * 239.99964 * 2 1 3 5 5 C 1.52999 * 109.47017 * 120.00062 * 2 1 3 6 6 C 1.50694 * 109.47494 * 60.00035 * 5 2 1 7 7 O 1.21283 * 119.99780 * 359.97438 * 6 5 2 8 8 N 1.34779 * 120.00366 * 179.97438 * 6 5 2 9 9 C 1.46496 * 120.00104 * 180.02562 * 8 6 5 10 10 C 1.50696 * 109.47134 * 180.02562 * 9 8 6 11 11 O 1.20823 * 120.00135 * 359.97438 * 10 9 8 12 12 O 1.34235 * 119.99963 * 179.97438 * 10 9 8 13 13 C 1.45200 * 116.99794 * 179.97438 * 12 10 9 14 14 C 1.50701 * 109.47044 * 180.02562 * 13 12 10 15 15 C 1.38633 * 119.74785 * 269.73062 * 14 13 12 16 16 C 1.37616 * 120.24971 * 179.72226 * 15 14 13 17 17 C 1.40726 * 119.74353 * 0.56653 * 16 15 14 18 18 C 1.41392 * 120.24573 * 179.68153 * 17 16 15 19 19 H 1.07998 * 120.00120 * 204.40682 * 18 17 16 20 20 C 1.39945 * 119.99829 * 24.40979 * 18 17 16 21 21 N 1.30824 * 120.00405 * 17.84574 * 20 18 17 22 22 Si 1.86797 * 119.99936 * 197.84402 * 20 18 17 23 23 H 1.48498 * 109.47062 * 59.99965 * 22 20 18 24 24 H 1.48505 * 109.47337 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.47130 * 299.99991 * 22 20 18 26 26 C 1.40715 * 119.50640 * 359.70704 * 17 16 15 27 27 C 1.37616 * 119.75074 * 359.97438 * 26 17 16 28 28 H 1.08997 * 109.46900 * 299.99688 * 1 2 3 29 29 H 1.08997 * 109.46971 * 60.00293 * 1 2 3 30 30 H 1.08995 * 109.46619 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47113 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.46966 * 300.00267 * 3 2 1 33 33 H 1.09005 * 109.46867 * 60.00027 * 3 2 1 34 34 H 1.09005 * 109.46896 * 299.99935 * 4 2 1 35 35 H 1.08997 * 109.47380 * 59.99993 * 4 2 1 36 36 H 1.09001 * 109.47224 * 179.97438 * 4 2 1 37 37 H 1.09005 * 109.47273 * 300.00159 * 5 2 1 38 38 H 1.09004 * 109.47458 * 180.02562 * 5 2 1 39 39 H 0.96999 * 119.99646 * 0.02562 * 8 6 5 40 40 H 1.09001 * 109.47492 * 59.99508 * 9 8 6 41 41 H 1.09001 * 109.47081 * 299.99892 * 9 8 6 42 42 H 1.09004 * 109.47012 * 300.00047 * 13 12 10 43 43 H 1.09003 * 109.47353 * 60.00225 * 13 12 10 44 44 H 1.07996 * 119.87768 * 359.97438 * 15 14 13 45 45 H 1.08002 * 120.13552 * 180.27593 * 16 15 14 46 46 H 0.97002 * 120.00394 * 180.02562 * 21 20 18 47 47 H 1.08003 * 120.12445 * 179.97438 * 26 17 16 48 48 H 1.07993 * 119.88115 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0400 -0.7213 1.2492 6 6 1.5378 -2.1420 1.2493 7 8 0.8401 -2.5386 0.3399 8 7 1.8638 -2.9721 2.2599 9 6 1.3759 -4.3534 2.2596 10 6 1.8781 -5.0638 3.4901 11 8 2.5727 -4.4766 4.2854 12 8 1.5538 -6.3489 3.7025 13 6 2.0733 -6.9692 4.9082 14 6 1.6093 -8.4014 4.9763 15 6 0.4175 -8.7087 5.6143 16 6 -0.0189 -10.0123 5.6775 17 6 0.7556 -11.0366 5.1019 18 6 0.3207 -12.3804 5.1666 19 1 1.0388 -13.1842 5.0995 20 6 -1.0404 -12.6688 5.3176 21 7 -1.9364 -11.7530 5.0532 22 14 -1.5778 -14.3615 5.8966 23 1 -1.0029 -14.6310 7.2390 24 1 -3.0600 -14.4106 5.9745 25 1 -1.0978 -15.3884 4.9372 26 6 1.9664 -10.7135 4.4619 27 6 2.3800 -9.4022 4.4048 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 3.1301 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 -1.7489 -1.2491 35 1 1.6768 -0.2075 -2.1392 36 1 3.1301 -0.7208 -1.2494 37 1 1.6767 -0.2074 2.1393 38 1 3.1301 -0.7209 1.2495 39 1 2.4214 -2.6548 2.9874 40 1 1.7392 -4.8670 1.3694 41 1 0.2859 -4.3538 2.2597 42 1 3.1629 -6.9411 4.8907 43 1 1.7098 -6.4273 5.7813 44 1 -0.1728 -7.9217 6.0598 45 1 -0.9499 -10.2491 6.1712 46 1 -2.8798 -11.9527 5.1582 47 1 2.5689 -11.4917 4.0171 48 1 3.3091 -9.1519 3.9145 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776111822.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:38 Heat of formation + Delta-G solvation = -123.819904 kcal Electronic energy + Delta-G solvation = -27188.637042 eV Core-core repulsion = 23207.665896 eV Total energy + Delta-G solvation = -3980.971146 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.73055 -40.01720 -37.79671 -36.99544 -36.25976 -34.63872 -33.92247 -30.99521 -29.94046 -29.41239 -27.78448 -27.44708 -27.39203 -26.65350 -23.85391 -21.37211 -21.13219 -20.84427 -20.11662 -19.31786 -17.89304 -17.43480 -17.11175 -16.61131 -16.39418 -15.69648 -15.58487 -15.32802 -14.67880 -14.65384 -14.49840 -14.09999 -14.04645 -13.76467 -13.31222 -13.02417 -12.75845 -12.47724 -12.38516 -12.35057 -12.25990 -12.07063 -12.01893 -11.78487 -11.50535 -11.36935 -11.20783 -11.05137 -11.03337 -10.93634 -10.91793 -10.55413 -10.46805 -10.27927 -9.79332 -9.74287 -9.51309 -9.38739 -9.25953 -7.61296 -7.50267 -6.90501 -4.50720 2.17785 2.21570 2.37458 2.72230 2.96573 2.99789 3.01006 3.05984 3.39042 3.82679 4.32667 4.41771 4.48374 4.53425 4.85263 4.94302 5.08625 5.17837 5.19104 5.23634 5.24930 5.37108 5.50319 5.54031 5.57472 5.61133 5.63540 5.67843 5.80976 5.85768 5.94081 5.98202 6.02664 6.19432 6.25730 6.26251 6.38092 6.66285 6.83097 6.93469 7.13536 7.19588 7.21940 7.47041 7.68070 7.80881 7.91363 7.95732 7.97631 8.14906 8.49475 8.74213 8.82303 10.03086 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.025599 B = 0.001700 C = 0.001649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.516068 B =16462.766442 C =16975.040991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.052 4.052 3 C -0.142 4.142 4 C -0.154 4.154 5 C -0.131 4.131 6 C 0.517 3.483 7 O -0.528 6.528 8 N -0.724 5.724 9 C 0.123 3.877 10 C 0.454 3.546 11 O -0.521 6.521 12 O -0.343 6.343 13 C 0.137 3.863 14 C -0.241 4.241 15 C -0.074 4.074 16 C -0.171 4.171 17 C 0.119 3.881 18 C -0.455 4.455 19 H 0.081 0.919 20 C 0.075 3.925 21 N -0.783 5.783 22 Si 0.911 3.089 23 H -0.262 1.262 24 H -0.277 1.277 25 H -0.264 1.264 26 C -0.230 4.230 27 C -0.062 4.062 28 H 0.046 0.954 29 H 0.051 0.949 30 H 0.084 0.916 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.084 0.916 35 H 0.050 0.950 36 H 0.046 0.954 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.411 0.589 40 H 0.111 0.889 41 H 0.112 0.888 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.089 0.911 45 H 0.120 0.880 46 H 0.284 0.716 47 H 0.095 0.905 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.082 19.721 -6.019 21.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.052 4.052 3 C -0.200 4.200 4 C -0.211 4.211 5 C -0.171 4.171 6 C 0.305 3.695 7 O -0.405 6.405 8 N -0.381 5.381 9 C -0.002 4.002 10 C 0.297 3.703 11 O -0.411 6.411 12 O -0.258 6.258 13 C 0.066 3.934 14 C -0.242 4.242 15 C -0.093 4.093 16 C -0.190 4.190 17 C 0.116 3.884 18 C -0.484 4.484 19 H 0.099 0.901 20 C -0.144 4.144 21 N -0.408 5.408 22 Si 0.735 3.265 23 H -0.187 1.187 24 H -0.202 1.202 25 H -0.188 1.188 26 C -0.250 4.250 27 C -0.081 4.081 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.103 0.897 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.103 0.897 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.249 0.751 40 H 0.129 0.871 41 H 0.129 0.871 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.107 0.893 45 H 0.138 0.862 46 H 0.095 0.905 47 H 0.113 0.887 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.519 19.573 -6.413 21.087 hybrid contribution 0.036 -0.561 0.733 0.923 sum 4.555 19.012 -5.680 20.359 Atomic orbital electron populations 1.22118 0.93974 1.04196 1.00868 1.20284 0.96497 0.94496 0.93947 1.21901 1.00868 0.95259 1.01932 1.22117 0.99989 1.02904 0.96135 1.21787 1.02584 0.91953 1.00772 1.20714 0.80067 0.87687 0.81054 1.90613 1.37470 1.77203 1.35209 1.45880 1.54569 1.10946 1.26666 1.20669 1.01743 0.82477 0.95325 1.23416 0.77712 0.82165 0.87003 1.90614 1.36556 1.67296 1.46665 1.86736 1.68957 1.23915 1.46216 1.21809 0.97288 0.91428 0.82887 1.18651 1.00731 0.90557 1.14280 1.20533 0.94105 0.96262 0.98401 1.21296 1.01852 0.91607 1.04250 1.17696 0.90320 0.93412 0.86966 1.19666 0.92489 0.93027 1.43178 0.90133 1.25984 0.96652 0.99383 0.92430 1.69815 1.02841 1.35222 1.32873 0.86311 0.77880 0.81794 0.80482 1.18675 1.20197 1.18844 1.20962 1.00961 0.94704 1.08364 1.20389 0.97255 0.93224 0.97188 0.93519 0.93033 0.89711 0.92668 0.92344 0.92661 0.89716 0.93040 0.93526 0.88704 0.88708 0.75149 0.87091 0.87069 0.91899 0.91831 0.89308 0.86209 0.90488 0.88672 0.89282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 8.18 37.16 0.30 -1.04 16 2 C -0.05 -0.40 0.77 -154.51 -0.12 -0.52 16 3 C -0.14 -0.86 8.47 37.16 0.31 -0.54 16 4 C -0.15 -1.34 8.18 37.16 0.30 -1.03 16 5 C -0.13 -0.94 4.77 -27.89 -0.13 -1.07 16 6 C 0.52 5.19 7.24 -10.99 -0.08 5.11 16 7 O -0.53 -6.74 11.35 5.55 0.06 -6.68 16 8 N -0.72 -7.22 5.53 -61.48 -0.34 -7.56 16 9 C 0.12 1.40 6.27 -5.20 -0.03 1.37 16 10 C 0.45 6.55 8.03 36.00 0.29 6.84 16 11 O -0.52 -8.17 15.42 -18.75 -0.29 -8.46 16 12 O -0.34 -5.94 10.20 -39.27 -0.40 -6.34 16 13 C 0.14 2.49 5.58 36.01 0.20 2.69 16 14 C -0.24 -5.17 5.54 -104.33 -0.58 -5.75 16 15 C -0.07 -1.69 9.67 -39.66 -0.38 -2.08 16 16 C -0.17 -4.30 8.70 -38.87 -0.34 -4.64 16 17 C 0.12 3.07 5.58 -106.82 -0.60 2.48 16 18 C -0.46 -11.63 9.05 -37.74 -0.34 -11.98 16 19 H 0.08 1.96 7.91 -52.49 -0.41 1.55 16 20 C 0.07 1.81 5.14 -17.34 -0.09 1.72 16 21 N -0.78 -19.56 10.95 55.55 0.61 -18.95 16 22 Si 0.91 17.91 29.59 -169.99 -5.03 12.88 16 23 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 24 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 25 H -0.26 -5.13 7.11 56.52 0.40 -4.72 16 26 C -0.23 -5.49 9.80 -38.87 -0.38 -5.87 16 27 C -0.06 -1.36 9.67 -39.66 -0.38 -1.74 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.93 5.51 -51.93 -0.29 0.65 16 31 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.08 0.93 5.51 -51.93 -0.29 0.64 16 35 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.41 3.74 7.44 -40.82 -0.30 3.44 16 40 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.11 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.06 1.07 8.07 -51.93 -0.42 0.65 16 43 H 0.06 1.09 8.07 -51.93 -0.42 0.68 16 44 H 0.09 1.83 8.06 -52.49 -0.42 1.40 16 45 H 0.12 3.10 6.16 -52.49 -0.32 2.78 16 46 H 0.28 6.44 8.30 -40.82 -0.34 6.10 16 47 H 0.10 2.12 8.06 -52.48 -0.42 1.70 16 48 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 395.68 15.07 5.96 5.96 Total: -1.00 -28.34 395.68 -8.97 -37.31 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -7.51 Total: 7.90 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: -2.04 Total: -16.06 kcal Atomic # 7 Polarization: -26.79 SS G_CDS: 0.27 Total: -26.52 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: -0.63 Total: -21.48 kcal Atomic # 14 Polarization: 17.91 SS G_CDS: -5.03 Total: 12.88 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -28.34 -8.97 -37.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776111822.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.509 kcal (2) G-P(sol) polarization free energy of solvation -28.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds