Wall clock time and date at job start Tue Mar 31 2020 19:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47143 * 2 1 4 4 C 1.53002 * 109.47210 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47196 * 180.02562 * 4 3 2 6 6 N 1.46505 * 109.46731 * 60.00377 * 4 3 2 7 7 C 1.34774 * 120.00244 * 60.00111 * 6 4 3 8 8 O 1.21283 * 119.99704 * 359.97438 * 7 6 4 9 9 C 1.50695 * 120.00256 * 179.97438 * 7 6 4 10 10 C 1.50703 * 109.47201 * 179.97438 * 9 7 6 11 11 C 1.37630 * 120.12886 * 265.00019 * 10 9 7 12 12 C 1.38617 * 120.24594 * 180.29951 * 11 10 9 13 13 C 1.38655 * 120.49962 * 359.44217 * 12 11 10 14 14 C 1.37604 * 120.25111 * 0.55942 * 13 12 11 15 15 C 1.40697 * 120.12145 * 85.02173 * 10 9 7 16 16 C 1.41393 * 120.25024 * 359.96098 * 15 10 9 17 17 H 1.08004 * 119.99701 * 334.08118 * 16 15 10 18 18 C 1.39940 * 120.00563 * 154.08903 * 16 15 10 19 19 N 1.30822 * 119.99912 * 343.60732 * 18 16 15 20 20 Si 1.86803 * 120.00192 * 163.61835 * 18 16 15 21 21 H 1.48494 * 109.47012 * 359.97438 * 20 18 16 22 22 H 1.48492 * 109.47407 * 119.99663 * 20 18 16 23 23 H 1.48508 * 109.46756 * 239.99409 * 20 18 16 24 24 C 1.50702 * 109.47222 * 300.00695 * 4 3 2 25 25 O 1.20826 * 119.99504 * 264.99651 * 24 4 3 26 26 O 1.34232 * 120.00231 * 84.99715 * 24 4 3 27 27 C 1.45191 * 116.99795 * 179.97438 * 26 24 4 28 28 H 1.08994 * 109.47049 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47284 * 299.99905 * 1 2 3 30 30 H 1.09001 * 109.47230 * 59.99545 * 1 2 3 31 31 H 1.09003 * 109.47459 * 240.00619 * 2 1 3 32 32 H 1.08995 * 109.47535 * 120.00167 * 2 1 3 33 33 H 1.09007 * 109.47051 * 60.00345 * 3 2 1 34 34 H 1.09000 * 109.47329 * 299.99792 * 3 2 1 35 35 H 1.09000 * 109.47199 * 300.00024 * 5 4 3 36 36 H 1.08994 * 109.47124 * 60.00442 * 5 4 3 37 37 H 1.09006 * 109.46953 * 180.02562 * 5 4 3 38 38 H 0.96996 * 119.99980 * 240.00135 * 6 4 3 39 39 H 1.09003 * 109.47324 * 59.99832 * 9 7 6 40 40 H 1.09000 * 109.47440 * 299.99911 * 9 7 6 41 41 H 1.07994 * 119.88008 * 0.02562 * 11 10 9 42 42 H 1.08001 * 119.74839 * 179.70479 * 12 11 10 43 43 H 1.08006 * 119.87364 * 180.30494 * 13 12 11 44 44 H 1.07992 * 120.12974 * 179.74704 * 14 13 12 45 45 H 0.97001 * 120.00439 * 179.97438 * 19 18 16 46 46 H 1.09003 * 109.47430 * 180.02562 * 27 26 24 47 47 H 1.09001 * 109.47588 * 299.99822 * 27 26 24 48 48 H 1.09001 * 109.47519 * 60.00268 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0800 2.8850 0.0013 6 7 4.0588 0.7518 -1.1953 7 6 3.7337 1.2121 -2.4196 8 8 3.0361 2.1980 -2.5312 9 6 4.2369 0.5020 -3.6498 10 6 3.7345 1.2119 -4.8805 11 6 2.5854 0.7828 -5.5048 12 6 2.1244 1.4301 -6.6405 13 6 2.8070 2.5224 -7.1540 14 6 3.9581 2.9687 -6.5463 15 6 4.4386 2.3156 -5.3960 16 6 5.6201 2.7655 -4.7628 17 1 5.7724 2.5805 -3.7097 18 6 6.5919 3.4507 -5.5006 19 7 6.5762 3.4014 -6.8078 20 14 7.9119 4.4355 -4.6189 21 1 7.7097 4.3316 -3.1514 22 1 9.2501 3.8987 -4.9738 23 1 7.8247 5.8598 -5.0305 24 6 4.0719 0.7322 1.2313 25 8 4.3588 1.3655 2.2195 26 8 4.2001 -0.6040 1.2297 27 6 4.6897 -1.2206 2.4496 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.6767 1.9564 0.8901 34 1 1.6767 1.9564 -0.8900 35 1 3.7171 3.3991 -0.8887 36 1 3.7164 3.3985 0.8913 37 1 5.1701 2.8850 0.0013 38 1 4.6164 -0.0368 -1.1061 39 1 3.8740 -0.5258 -3.6500 40 1 5.3269 0.5024 -3.6493 41 1 2.0432 -0.0640 -5.1109 42 1 1.2244 1.0837 -7.1268 43 1 2.4361 3.0222 -8.0366 44 1 4.4904 3.8170 -6.9502 45 1 7.2496 3.8767 -7.3192 46 1 4.7462 -2.3007 2.3135 47 1 5.6813 -0.8316 2.6808 48 1 4.0096 -0.9927 3.2703 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776796767.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:12 Heat of formation + Delta-G solvation = -116.777312 kcal Electronic energy + Delta-G solvation = -29981.181410 eV Core-core repulsion = 26000.515654 eV Total energy + Delta-G solvation = -3980.665756 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.15432 -39.40528 -37.55834 -36.79889 -35.88962 -33.59976 -33.46058 -31.92828 -30.53213 -29.41636 -28.23263 -26.76673 -26.65327 -24.99442 -23.99910 -21.63808 -21.04770 -20.86843 -19.71417 -19.20998 -18.19956 -17.25542 -17.06737 -16.74967 -15.85799 -15.43409 -15.18055 -14.97799 -14.49832 -14.35444 -14.00758 -13.79296 -13.59188 -13.32800 -13.23235 -12.95505 -12.66844 -12.56913 -12.40180 -12.21467 -12.09635 -11.85746 -11.70807 -11.54835 -11.35898 -11.15934 -11.07231 -11.00214 -10.96643 -10.79536 -10.65682 -10.60762 -10.55172 -10.36150 -9.46136 -9.34713 -9.14747 -9.02021 -8.82458 -7.28916 -7.27066 -6.71803 -4.32194 1.91959 2.43281 2.79461 2.97882 3.09291 3.14304 3.28123 3.28921 3.50963 3.95496 4.44434 4.65531 4.68389 4.86012 4.88111 4.93982 5.06502 5.21274 5.29218 5.43762 5.50571 5.62539 5.77996 5.81445 5.83175 5.88102 5.95198 6.03311 6.06672 6.10343 6.16574 6.24505 6.30704 6.37113 6.41999 6.45951 6.53394 6.66603 6.82225 7.11057 7.31885 7.44517 7.50226 7.66056 7.85728 7.96145 8.09652 8.15675 8.33793 8.67216 8.81315 8.94068 9.03879 10.22405 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011679 B = 0.004188 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2396.881800 B = 6684.250197 C = 8277.566824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C -0.132 4.132 4 C 0.198 3.802 5 C -0.157 4.157 6 N -0.735 5.735 7 C 0.523 3.477 8 O -0.512 6.512 9 C -0.070 4.070 10 C -0.180 4.180 11 C -0.080 4.080 12 C -0.239 4.239 13 C -0.107 4.107 14 C -0.159 4.159 15 C 0.130 3.870 16 C -0.456 4.456 17 H 0.075 0.925 18 C 0.077 3.923 19 N -0.795 5.795 20 Si 0.900 3.100 21 H -0.261 1.261 22 H -0.275 1.275 23 H -0.272 1.272 24 C 0.468 3.532 25 O -0.498 6.498 26 O -0.353 6.353 27 C 0.033 3.967 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.058 0.942 31 H 0.070 0.930 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.110 0.890 35 H 0.100 0.900 36 H 0.071 0.929 37 H 0.061 0.939 38 H 0.403 0.597 39 H 0.077 0.923 40 H 0.097 0.903 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.116 0.884 45 H 0.279 0.721 46 H 0.102 0.898 47 H 0.063 0.937 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.336 -8.361 13.841 16.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.170 4.170 4 C 0.110 3.890 5 C -0.215 4.215 6 N -0.393 5.393 7 C 0.311 3.689 8 O -0.385 6.385 9 C -0.110 4.110 10 C -0.182 4.182 11 C -0.098 4.098 12 C -0.259 4.259 13 C -0.126 4.126 14 C -0.178 4.178 15 C 0.127 3.873 16 C -0.485 4.485 17 H 0.093 0.907 18 C -0.140 4.140 19 N -0.421 5.421 20 Si 0.725 3.275 21 H -0.185 1.185 22 H -0.201 1.201 23 H -0.197 1.197 24 C 0.310 3.690 25 O -0.384 6.384 26 O -0.269 6.269 27 C -0.061 4.061 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.128 0.872 35 H 0.119 0.881 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.237 0.763 39 H 0.095 0.905 40 H 0.115 0.885 41 H 0.102 0.898 42 H 0.102 0.898 43 H 0.103 0.897 44 H 0.134 0.866 45 H 0.089 0.911 46 H 0.121 0.879 47 H 0.082 0.918 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.609 -7.380 13.880 16.129 hybrid contribution 1.078 0.027 0.652 1.260 sum -2.531 -7.353 14.532 16.482 Atomic orbital electron populations 1.21737 0.95658 1.01448 1.01875 1.21547 0.95996 0.96072 1.02429 1.22125 0.91081 0.98636 1.05153 1.20226 0.95840 0.92545 0.80362 1.22188 1.01753 0.92729 1.04853 1.46211 1.55773 1.32762 1.04523 1.21218 0.79463 0.84654 0.83556 1.90618 1.36443 1.25281 1.86176 1.20269 1.02435 0.97833 0.90419 1.19019 1.00056 1.00212 0.98924 1.20284 0.95397 0.98334 0.95802 1.20298 1.02413 1.02182 1.00992 1.20676 0.96332 0.96985 0.98558 1.21290 0.95875 1.01641 0.99039 1.17326 0.91024 0.88174 0.90728 1.19498 1.01158 1.31316 0.96566 0.90721 1.25863 0.98691 0.94815 0.94610 1.69827 1.32117 1.33596 1.06528 0.86384 0.80056 0.80060 0.80983 1.18498 1.20084 1.19740 1.23894 0.73978 0.80991 0.90137 1.90670 1.45341 1.67183 1.35177 1.86552 1.77104 1.22560 1.40721 1.23292 0.99632 0.98153 0.84993 0.92837 0.93093 0.92327 0.91167 0.92341 0.91050 0.87212 0.88096 0.91027 0.92031 0.76266 0.90493 0.88523 0.89793 0.89752 0.89676 0.86614 0.91055 0.87936 0.91839 0.91939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.91 37.16 0.37 -1.22 16 2 C -0.12 -1.44 5.37 -26.73 -0.14 -1.58 16 3 C -0.13 -1.75 4.05 -26.73 -0.11 -1.86 16 4 C 0.20 2.75 0.71 -132.97 -0.09 2.66 16 5 C -0.16 -2.39 7.93 37.16 0.29 -2.09 16 6 N -0.74 -10.40 4.27 -48.68 -0.21 -10.61 16 7 C 0.52 9.36 6.88 -10.99 -0.08 9.29 16 8 O -0.51 -10.91 12.25 5.55 0.07 -10.85 16 9 C -0.07 -1.30 5.18 -29.04 -0.15 -1.45 16 10 C -0.18 -4.17 4.43 -103.91 -0.46 -4.63 16 11 C -0.08 -1.79 9.66 -39.66 -0.38 -2.17 16 12 C -0.24 -5.47 10.05 -39.29 -0.39 -5.86 16 13 C -0.11 -2.57 10.02 -39.66 -0.40 -2.97 16 14 C -0.16 -4.19 8.68 -38.87 -0.34 -4.52 16 15 C 0.13 3.38 5.56 -106.82 -0.59 2.78 16 16 C -0.46 -11.70 8.14 -37.74 -0.31 -12.01 16 17 H 0.07 1.86 6.68 -52.48 -0.35 1.51 16 18 C 0.08 1.92 5.16 -17.34 -0.09 1.83 16 19 N -0.79 -20.32 10.97 55.55 0.61 -19.71 16 20 Si 0.90 18.76 29.59 -169.99 -5.03 13.73 16 21 H -0.26 -5.45 7.11 56.52 0.40 -5.04 16 22 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 23 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 24 C 0.47 6.14 5.99 36.01 0.22 6.35 16 25 O -0.50 -7.51 15.84 -18.75 -0.30 -7.81 16 26 O -0.35 -3.82 8.46 -39.26 -0.33 -4.15 16 27 C 0.03 0.26 10.55 101.05 1.07 1.32 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.88 7.60 -51.93 -0.39 0.48 16 32 H 0.06 0.64 6.40 -51.93 -0.33 0.31 16 33 H 0.07 0.87 8.14 -51.92 -0.42 0.45 16 34 H 0.11 1.72 6.17 -51.93 -0.32 1.40 16 35 H 0.10 1.76 6.17 -51.93 -0.32 1.44 16 36 H 0.07 1.00 7.87 -51.93 -0.41 0.59 16 37 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.40 4.77 7.91 -40.82 -0.32 4.44 16 39 H 0.08 1.19 8.05 -51.93 -0.42 0.77 16 40 H 0.10 1.79 7.06 -51.93 -0.37 1.42 16 41 H 0.08 1.64 8.06 -52.49 -0.42 1.22 16 42 H 0.08 1.71 8.06 -52.49 -0.42 1.29 16 43 H 0.09 1.84 8.06 -52.48 -0.42 1.42 16 44 H 0.12 3.15 6.22 -52.49 -0.33 2.82 16 45 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 46 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 47 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 48 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 LS Contribution 388.72 15.07 5.86 5.86 Total: -1.00 -30.00 388.72 -8.27 -38.26 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: -7.35 Total: 11.39 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: -1.59 Total: -16.12 kcal Atomic # 7 Polarization: -30.72 SS G_CDS: 0.40 Total: -30.32 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: -0.56 Total: -22.81 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.03 Total: 13.73 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -30.00 -8.27 -38.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776796767.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.512 kcal (2) G-P(sol) polarization free energy of solvation -29.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds