Wall clock time and date at job start Tue Mar 31 2020 19:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47143 * 2 1 4 4 C 1.53002 * 109.47210 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47196 * 180.02562 * 4 3 2 6 6 N 1.46505 * 109.46731 * 60.00377 * 4 3 2 7 7 C 1.34774 * 120.00244 * 60.00111 * 6 4 3 8 8 O 1.21283 * 119.99704 * 359.97438 * 7 6 4 9 9 C 1.50695 * 120.00256 * 179.97438 * 7 6 4 10 10 C 1.50703 * 109.47201 * 179.97438 * 9 7 6 11 11 C 1.37630 * 120.12886 * 265.00019 * 10 9 7 12 12 C 1.38617 * 120.24594 * 180.29951 * 11 10 9 13 13 C 1.38655 * 120.49962 * 359.44217 * 12 11 10 14 14 C 1.37604 * 120.25111 * 0.55942 * 13 12 11 15 15 C 1.40697 * 120.12145 * 85.02173 * 10 9 7 16 16 C 1.41393 * 120.25024 * 359.96098 * 15 10 9 17 17 H 1.08004 * 119.99701 * 334.08118 * 16 15 10 18 18 C 1.39940 * 120.00563 * 154.08903 * 16 15 10 19 19 N 1.30822 * 119.99912 * 343.60732 * 18 16 15 20 20 Si 1.86803 * 120.00192 * 163.61835 * 18 16 15 21 21 H 1.48494 * 109.47012 * 359.97438 * 20 18 16 22 22 H 1.48492 * 109.47407 * 119.99663 * 20 18 16 23 23 H 1.48508 * 109.46756 * 239.99409 * 20 18 16 24 24 C 1.50702 * 109.47222 * 300.00695 * 4 3 2 25 25 O 1.20826 * 119.99504 * 264.99651 * 24 4 3 26 26 O 1.34232 * 120.00231 * 84.99715 * 24 4 3 27 27 C 1.45191 * 116.99795 * 179.97438 * 26 24 4 28 28 H 1.08994 * 109.47049 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47284 * 299.99905 * 1 2 3 30 30 H 1.09001 * 109.47230 * 59.99545 * 1 2 3 31 31 H 1.09003 * 109.47459 * 240.00619 * 2 1 3 32 32 H 1.08995 * 109.47535 * 120.00167 * 2 1 3 33 33 H 1.09007 * 109.47051 * 60.00345 * 3 2 1 34 34 H 1.09000 * 109.47329 * 299.99792 * 3 2 1 35 35 H 1.09000 * 109.47199 * 300.00024 * 5 4 3 36 36 H 1.08994 * 109.47124 * 60.00442 * 5 4 3 37 37 H 1.09006 * 109.46953 * 180.02562 * 5 4 3 38 38 H 0.96996 * 119.99980 * 240.00135 * 6 4 3 39 39 H 1.09003 * 109.47324 * 59.99832 * 9 7 6 40 40 H 1.09000 * 109.47440 * 299.99911 * 9 7 6 41 41 H 1.07994 * 119.88008 * 0.02562 * 11 10 9 42 42 H 1.08001 * 119.74839 * 179.70479 * 12 11 10 43 43 H 1.08006 * 119.87364 * 180.30494 * 13 12 11 44 44 H 1.07992 * 120.12974 * 179.74704 * 14 13 12 45 45 H 0.97001 * 120.00439 * 179.97438 * 19 18 16 46 46 H 1.09003 * 109.47430 * 180.02562 * 27 26 24 47 47 H 1.09001 * 109.47588 * 299.99822 * 27 26 24 48 48 H 1.09001 * 109.47519 * 60.00268 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0800 2.8850 0.0013 6 7 4.0588 0.7518 -1.1953 7 6 3.7337 1.2121 -2.4196 8 8 3.0361 2.1980 -2.5312 9 6 4.2369 0.5020 -3.6498 10 6 3.7345 1.2119 -4.8805 11 6 2.5854 0.7828 -5.5048 12 6 2.1244 1.4301 -6.6405 13 6 2.8070 2.5224 -7.1540 14 6 3.9581 2.9687 -6.5463 15 6 4.4386 2.3156 -5.3960 16 6 5.6201 2.7655 -4.7628 17 1 5.7724 2.5805 -3.7097 18 6 6.5919 3.4507 -5.5006 19 7 6.5762 3.4014 -6.8078 20 14 7.9119 4.4355 -4.6189 21 1 7.7097 4.3316 -3.1514 22 1 9.2501 3.8987 -4.9738 23 1 7.8247 5.8598 -5.0305 24 6 4.0719 0.7322 1.2313 25 8 4.3588 1.3655 2.2195 26 8 4.2001 -0.6040 1.2297 27 6 4.6897 -1.2206 2.4496 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.6767 1.9564 0.8901 34 1 1.6767 1.9564 -0.8900 35 1 3.7171 3.3991 -0.8887 36 1 3.7164 3.3985 0.8913 37 1 5.1701 2.8850 0.0013 38 1 4.6164 -0.0368 -1.1061 39 1 3.8740 -0.5258 -3.6500 40 1 5.3269 0.5024 -3.6493 41 1 2.0432 -0.0640 -5.1109 42 1 1.2244 1.0837 -7.1268 43 1 2.4361 3.0222 -8.0366 44 1 4.4904 3.8170 -6.9502 45 1 7.2496 3.8767 -7.3192 46 1 4.7462 -2.3007 2.3135 47 1 5.6813 -0.8316 2.6808 48 1 4.0096 -0.9927 3.2703 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776796767.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:11 Heat of formation + Delta-G solvation = -132.233698 kcal Electronic energy + Delta-G solvation = -29981.851650 eV Core-core repulsion = 26000.515654 eV Total energy + Delta-G solvation = -3981.335996 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.23199 -40.73658 -39.24041 -37.81215 -37.13340 -35.45955 -34.57068 -33.49032 -31.89452 -31.26684 -28.99582 -28.33620 -27.74503 -26.80892 -25.07169 -22.78765 -22.59448 -22.39806 -21.10767 -20.56225 -19.38174 -18.97172 -18.24496 -17.76158 -17.22336 -17.05593 -16.46251 -16.23852 -15.95162 -15.67015 -15.38756 -15.10644 -14.84842 -14.67100 -14.58036 -14.34814 -14.05679 -13.66051 -13.53938 -13.40138 -13.28937 -13.26301 -13.08512 -12.94352 -12.87059 -12.72325 -12.53657 -12.44492 -12.28885 -12.09639 -11.87376 -11.80146 -11.67998 -11.54875 -11.26934 -11.16009 -11.00258 -10.47384 -10.09784 -9.17433 -9.11128 -8.56609 -6.24992 0.86025 1.03369 1.18524 1.37267 1.49498 1.50326 1.53949 1.87956 2.20813 2.22224 2.82186 3.41834 3.63959 3.79494 3.83349 4.10201 4.18878 4.28202 4.30348 4.34625 4.45973 4.46748 4.48198 4.64498 4.66028 4.69163 4.73481 4.76113 4.77141 4.87202 4.89355 4.97189 5.08209 5.11996 5.21170 5.23288 5.24925 5.27708 5.41597 5.42168 5.46548 5.59758 5.82409 6.08834 6.21761 6.26929 6.46760 6.50572 6.64990 6.79548 7.03821 7.16389 7.45597 8.39878 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011679 B = 0.004188 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2396.881800 B = 6684.250197 C = 8277.566824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.117 4.117 3 C -0.128 4.128 4 C 0.196 3.804 5 C -0.154 4.154 6 N -0.717 5.717 7 C 0.528 3.472 8 O -0.550 6.550 9 C -0.070 4.070 10 C -0.182 4.182 11 C -0.088 4.088 12 C -0.242 4.242 13 C -0.118 4.118 14 C -0.194 4.194 15 C 0.099 3.901 16 C -0.479 4.479 17 H 0.073 0.927 18 C 0.038 3.962 19 N -0.827 5.827 20 Si 0.966 3.034 21 H -0.262 1.262 22 H -0.263 1.263 23 H -0.271 1.271 24 C 0.478 3.522 25 O -0.519 6.519 26 O -0.349 6.349 27 C 0.025 3.975 28 H 0.068 0.932 29 H 0.058 0.942 30 H 0.045 0.955 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.055 0.945 38 H 0.416 0.584 39 H 0.114 0.886 40 H 0.096 0.904 41 H 0.118 0.882 42 H 0.113 0.887 43 H 0.101 0.899 44 H 0.094 0.906 45 H 0.284 0.716 46 H 0.136 0.864 47 H 0.062 0.938 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.540 -10.596 15.694 19.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.155 4.155 3 C -0.166 4.166 4 C 0.108 3.892 5 C -0.212 4.212 6 N -0.374 5.374 7 C 0.317 3.683 8 O -0.427 6.427 9 C -0.109 4.109 10 C -0.184 4.184 11 C -0.106 4.106 12 C -0.261 4.261 13 C -0.137 4.137 14 C -0.213 4.213 15 C 0.096 3.904 16 C -0.509 4.509 17 H 0.091 0.909 18 C -0.176 4.176 19 N -0.454 5.454 20 Si 0.788 3.212 21 H -0.186 1.186 22 H -0.187 1.187 23 H -0.196 1.196 24 C 0.321 3.679 25 O -0.406 6.406 26 O -0.265 6.265 27 C -0.068 4.068 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.100 0.900 37 H 0.075 0.925 38 H 0.254 0.746 39 H 0.132 0.868 40 H 0.114 0.886 41 H 0.136 0.864 42 H 0.131 0.869 43 H 0.120 0.880 44 H 0.112 0.888 45 H 0.095 0.905 46 H 0.154 0.846 47 H 0.081 0.919 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.802 -9.668 15.745 18.863 hybrid contribution 1.057 0.620 0.096 1.229 sum -2.745 -9.048 15.841 18.448 Atomic orbital electron populations 1.21724 0.94788 1.02363 1.01673 1.21509 0.96751 0.94651 1.02569 1.22059 0.90453 0.99797 1.04312 1.20189 0.96430 0.91931 0.80637 1.22099 1.01312 0.93813 1.04017 1.45919 1.55055 1.32765 1.03657 1.20983 0.78993 0.84007 0.84341 1.90625 1.38367 1.26872 1.86795 1.20285 1.02375 0.99290 0.88969 1.19483 0.99733 0.99202 1.00000 1.20715 0.95234 0.99150 0.95504 1.20701 1.02978 1.01340 1.01062 1.20932 0.95885 0.97702 0.99152 1.21286 0.97313 1.02158 1.00571 1.17694 0.91933 0.89492 0.91235 1.19640 1.01820 1.32903 0.96549 0.90902 1.26596 1.00573 0.95298 0.95154 1.69888 1.33216 1.34489 1.07771 0.85398 0.77863 0.78429 0.79511 1.18627 1.18723 1.19645 1.23478 0.73514 0.81786 0.89146 1.90670 1.46383 1.67854 1.35727 1.86530 1.76723 1.20941 1.42274 1.23644 0.99500 0.99733 0.83877 0.91345 0.92257 0.93626 0.91821 0.91215 0.90154 0.89787 0.90727 0.90025 0.92548 0.74641 0.86790 0.88606 0.86438 0.86900 0.88040 0.88810 0.90523 0.84610 0.91904 0.91627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 9.91 71.98 0.71 -2.11 16 2 C -0.12 -2.49 5.37 30.59 0.16 -2.32 16 3 C -0.13 -3.27 4.05 30.60 0.12 -3.15 16 4 C 0.20 5.24 0.71 2.86 0.00 5.24 16 5 C -0.15 -4.71 7.93 71.98 0.57 -4.14 16 6 N -0.72 -19.30 4.27 -426.32 -1.82 -21.12 16 7 C 0.53 18.58 6.88 87.66 0.60 19.19 16 8 O -0.55 -23.81 12.25 -3.04 -0.04 -23.85 16 9 C -0.07 -2.50 5.18 29.10 0.15 -2.35 16 10 C -0.18 -8.39 4.43 -19.41 -0.09 -8.48 16 11 C -0.09 -3.79 9.66 22.22 0.21 -3.58 16 12 C -0.24 -10.74 10.05 22.46 0.23 -10.51 16 13 C -0.12 -5.76 10.02 22.22 0.22 -5.54 16 14 C -0.19 -10.59 8.68 22.73 0.20 -10.39 16 15 C 0.10 5.27 5.56 -21.29 -0.12 5.15 16 16 C -0.48 -25.34 8.14 23.46 0.19 -25.15 16 17 H 0.07 3.74 6.68 -2.91 -0.02 3.72 16 18 C 0.04 1.93 5.16 85.26 0.44 2.37 16 19 N -0.83 -43.71 10.97 21.82 0.24 -43.47 16 20 Si 0.97 39.21 29.59 68.60 2.03 41.24 16 21 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 22 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16 23 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 24 C 0.48 11.60 5.99 71.24 0.43 12.03 16 25 O -0.52 -14.78 15.84 21.96 0.35 -14.43 16 26 O -0.35 -6.52 8.46 -51.44 -0.44 -6.95 16 27 C 0.03 0.31 10.55 113.37 1.20 1.51 16 28 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.06 1.43 7.60 -2.39 -0.02 1.42 16 32 H 0.07 1.33 6.40 -2.39 -0.02 1.31 16 33 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 34 H 0.08 2.65 6.17 -2.39 -0.01 2.64 16 35 H 0.07 2.70 6.17 -2.39 -0.01 2.69 16 36 H 0.08 2.27 7.87 -2.39 -0.02 2.25 16 37 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 38 H 0.42 8.89 7.91 -92.71 -0.73 8.16 16 39 H 0.11 3.18 8.05 -2.39 -0.02 3.16 16 40 H 0.10 3.47 7.06 -2.39 -0.02 3.45 16 41 H 0.12 4.21 8.06 -2.91 -0.02 4.19 16 42 H 0.11 4.30 8.06 -2.91 -0.02 4.27 16 43 H 0.10 4.43 8.06 -2.91 -0.02 4.41 16 44 H 0.09 5.41 6.22 -2.91 -0.02 5.39 16 45 H 0.28 13.68 8.30 -92.71 -0.77 12.91 16 46 H 0.14 0.80 8.14 -2.39 -0.02 0.78 16 47 H 0.06 0.82 8.13 -2.39 -0.02 0.80 16 48 H 0.06 0.81 8.13 -2.39 -0.02 0.79 16 Total: -1.00 -67.01 388.72 5.80 -61.21 By element: Atomic # 1 Polarization: 39.36 SS G_CDS: 0.24 Total: 39.60 kcal Atomic # 6 Polarization: -37.46 SS G_CDS: 5.24 Total: -32.22 kcal Atomic # 7 Polarization: -63.01 SS G_CDS: -1.58 Total: -64.59 kcal Atomic # 8 Polarization: -45.11 SS G_CDS: -0.12 Total: -45.23 kcal Atomic # 14 Polarization: 39.21 SS G_CDS: 2.03 Total: 41.24 kcal Total: -67.01 5.80 -61.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776796767.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.025 kcal (2) G-P(sol) polarization free energy of solvation -67.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds