Wall clock time and date at job start Tue Mar 31 2020 19:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34234 * 116.99954 * 2 1 4 4 O 1.20818 * 119.99693 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99820 * 180.02562 * 3 2 1 6 6 H 1.09004 * 109.47394 * 59.99725 * 5 3 2 7 7 N 1.46501 * 109.47014 * 180.02562 * 5 3 2 8 8 C 1.34775 * 119.99516 * 205.00202 * 7 5 3 9 9 O 1.21274 * 120.00445 * 359.97438 * 8 7 5 10 10 C 1.50699 * 119.99522 * 180.02562 * 8 7 5 11 11 C 1.50700 * 109.47057 * 179.97438 * 10 8 7 12 12 C 1.37642 * 120.12792 * 264.99577 * 11 10 8 13 13 C 1.38612 * 120.25151 * 179.74535 * 12 11 10 14 14 C 1.38656 * 120.49998 * 0.26185 * 13 12 11 15 15 C 1.37597 * 120.24937 * 0.02562 * 14 13 12 16 16 C 1.40704 * 120.13174 * 85.27102 * 11 10 8 17 17 C 1.41391 * 120.24223 * 359.97438 * 16 11 10 18 18 H 1.08007 * 119.99917 * 334.30441 * 17 16 11 19 19 C 1.39946 * 120.00125 * 154.30237 * 17 16 11 20 20 N 1.30823 * 119.99468 * 343.66622 * 19 17 16 21 21 Si 1.86796 * 120.00127 * 163.66631 * 19 17 16 22 22 H 1.48501 * 109.47217 * 60.00126 * 21 19 17 23 23 H 1.48503 * 109.47102 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.47218 * 299.99901 * 21 19 17 25 25 C 1.52997 * 109.46843 * 299.99789 * 5 3 2 26 26 C 1.53000 * 109.47211 * 300.00184 * 25 5 3 27 27 C 1.52995 * 109.47387 * 60.00419 * 25 5 3 28 28 C 1.53009 * 109.47171 * 180.02562 * 25 5 3 29 29 H 1.08996 * 109.47205 * 59.99872 * 1 2 3 30 30 H 1.09001 * 109.47431 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46896 * 299.99679 * 1 2 3 32 32 H 0.97000 * 120.00223 * 24.99475 * 7 5 3 33 33 H 1.08995 * 109.47704 * 59.99641 * 10 8 7 34 34 H 1.09007 * 109.46869 * 299.98951 * 10 8 7 35 35 H 1.08006 * 119.87061 * 0.02737 * 12 11 10 36 36 H 1.07992 * 119.75161 * 180.23125 * 13 12 11 37 37 H 1.07992 * 119.87749 * 180.02562 * 14 13 12 38 38 H 1.07996 * 120.13026 * 180.02562 * 15 14 13 39 39 H 0.97003 * 119.99997 * 180.02562 * 20 19 17 40 40 H 1.08997 * 109.47077 * 60.00109 * 26 25 5 41 41 H 1.09004 * 109.47191 * 180.02562 * 26 25 5 42 42 H 1.08996 * 109.47160 * 299.99930 * 26 25 5 43 43 H 1.08996 * 109.47750 * 59.99487 * 27 25 5 44 44 H 1.09000 * 109.47449 * 180.02562 * 27 25 5 45 45 H 1.09009 * 109.47024 * 299.99520 * 27 25 5 46 46 H 1.08999 * 109.46352 * 59.99946 * 28 25 5 47 47 H 1.08994 * 109.47060 * 179.97438 * 28 25 5 48 48 H 1.08991 * 109.47119 * 300.00243 * 28 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9557 0.7809 -0.8908 7 7 3.9817 2.6798 0.0002 8 6 5.1870 3.0263 -0.4935 9 8 5.9278 2.1751 -0.9378 10 6 5.6145 4.4713 -0.4922 11 6 6.9917 4.5883 -1.0927 12 6 8.1016 4.6014 -0.2787 13 6 9.3698 4.7036 -0.8287 14 6 9.5357 4.7990 -2.2019 15 6 8.4403 4.7937 -3.0346 16 6 7.1478 4.6902 -2.4874 17 6 6.0148 4.6830 -3.3331 18 1 5.1027 4.2031 -3.0101 19 6 6.0751 5.2979 -4.5889 20 7 7.0380 6.1414 -4.8585 21 14 4.7807 4.9141 -5.8798 22 1 3.4395 5.2865 -5.3621 23 1 5.0678 5.6882 -7.1141 24 1 4.8060 3.4620 -6.1898 25 6 4.1138 0.5811 1.2483 26 6 3.5672 1.2744 2.4979 27 6 3.6800 -0.8861 1.2482 28 6 5.6417 0.6616 1.2481 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 3.3893 3.3605 0.3558 33 1 5.6323 4.8442 0.5319 34 1 4.9101 5.0592 -1.0808 35 1 7.9840 4.5273 0.7924 36 1 10.2352 4.7094 -0.1827 37 1 10.5285 4.8777 -2.6197 38 1 8.5718 4.8677 -4.1039 39 1 7.0796 6.5678 -5.7288 40 1 2.4787 1.2174 2.4983 41 1 3.9576 0.7804 3.3877 42 1 3.8762 2.3196 2.4980 43 1 4.0693 -1.3801 0.3581 44 1 4.0697 -1.3803 2.1382 45 1 2.5914 -0.9432 1.2487 46 1 5.9503 1.7070 1.2484 47 1 6.0317 0.1678 2.1381 48 1 6.0315 0.1680 0.3580 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776933038.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:08 Heat of formation + Delta-G solvation = -110.904628 kcal Electronic energy + Delta-G solvation = -30016.894957 eV Core-core repulsion = 26036.483859 eV Total energy + Delta-G solvation = -3980.411098 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.17447 -39.41146 -37.66575 -36.70358 -36.63650 -33.58918 -33.29128 -31.63215 -29.44231 -29.09257 -27.44257 -27.34589 -26.98999 -25.94003 -24.81606 -21.62847 -20.91808 -20.73262 -19.46893 -19.06879 -17.67636 -17.37343 -17.07075 -16.82514 -15.99546 -15.47719 -15.44399 -15.11885 -14.45628 -14.13889 -14.02935 -13.74354 -13.47629 -13.45141 -13.20690 -13.06418 -12.71033 -12.54528 -12.47895 -12.11411 -11.89088 -11.72086 -11.60920 -11.54146 -11.36233 -11.12881 -11.04742 -10.99610 -10.95195 -10.81615 -10.66092 -10.61918 -10.44248 -10.37177 -9.45271 -9.35067 -9.19589 -9.12175 -8.79698 -7.28277 -7.26088 -6.70655 -4.31084 1.99461 2.32393 2.83971 3.02142 3.08338 3.12334 3.29086 3.31130 3.63370 3.96650 4.44206 4.59974 4.69557 4.79770 4.86823 4.94312 4.97822 5.26454 5.29252 5.40469 5.53686 5.63279 5.70284 5.76913 5.82866 5.91731 5.98543 6.02666 6.06272 6.11851 6.14585 6.21666 6.31423 6.34239 6.46292 6.54143 6.58733 6.64978 6.83324 7.12137 7.32778 7.45523 7.51688 7.66816 7.85837 7.96906 8.10372 8.16511 8.34866 8.67981 8.80423 8.94964 9.04821 10.23544 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011841 B = 0.004161 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2364.024344 B = 6727.855380 C = 8466.877833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.347 6.347 3 C 0.464 3.536 4 O -0.502 6.502 5 C 0.165 3.835 6 H 0.124 0.876 7 N -0.730 5.730 8 C 0.521 3.479 9 O -0.510 6.510 10 C -0.069 4.069 11 C -0.180 4.180 12 C -0.080 4.080 13 C -0.240 4.240 14 C -0.107 4.107 15 C -0.159 4.159 16 C 0.130 3.870 17 C -0.457 4.457 18 H 0.073 0.927 19 C 0.078 3.922 20 N -0.795 5.795 21 Si 0.901 3.099 22 H -0.266 1.266 23 H -0.278 1.278 24 H -0.265 1.265 25 C -0.072 4.072 26 C -0.143 4.143 27 C -0.151 4.151 28 C -0.131 4.131 29 H 0.063 0.937 30 H 0.101 0.899 31 H 0.062 0.938 32 H 0.405 0.595 33 H 0.077 0.923 34 H 0.098 0.902 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.116 0.884 39 H 0.280 0.720 40 H 0.046 0.954 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.060 0.940 44 H 0.058 0.942 45 H 0.074 0.926 46 H 0.062 0.938 47 H 0.049 0.951 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.755 -10.049 10.562 18.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.263 6.263 3 C 0.306 3.694 4 O -0.388 6.388 5 C 0.058 3.942 6 H 0.141 0.859 7 N -0.387 5.387 8 C 0.309 3.691 9 O -0.383 6.383 10 C -0.109 4.109 11 C -0.182 4.182 12 C -0.098 4.098 13 C -0.259 4.259 14 C -0.125 4.125 15 C -0.178 4.178 16 C 0.128 3.872 17 C -0.487 4.487 18 H 0.092 0.908 19 C -0.139 4.139 20 N -0.420 5.420 21 Si 0.726 3.274 22 H -0.191 1.191 23 H -0.203 1.203 24 H -0.189 1.189 25 C -0.073 4.073 26 C -0.200 4.200 27 C -0.208 4.208 28 C -0.188 4.188 29 H 0.082 0.918 30 H 0.120 0.880 31 H 0.081 0.919 32 H 0.241 0.759 33 H 0.095 0.905 34 H 0.116 0.884 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.134 0.866 39 H 0.091 0.909 40 H 0.066 0.934 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.077 0.923 45 H 0.093 0.907 46 H 0.081 0.919 47 H 0.068 0.932 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.349 -10.195 10.019 17.647 hybrid contribution -1.153 0.304 -0.554 1.315 sum -11.502 -9.892 9.465 17.881 Atomic orbital electron populations 1.23304 0.76696 1.03711 1.02643 1.86622 1.23136 1.32749 1.83825 1.23861 0.91970 0.81652 0.71936 1.90662 1.66833 1.36278 1.45065 1.20471 0.85668 0.86197 1.01909 0.85866 1.46022 1.19981 1.06512 1.66176 1.21235 0.79644 0.92466 0.75733 1.90692 1.52191 1.51737 1.43719 1.20258 0.98193 0.91296 1.01132 1.19006 0.91072 1.14573 0.93583 1.20283 0.92831 1.00123 0.96555 1.20291 0.95394 1.15598 0.94632 1.20669 0.97082 1.01052 0.93710 1.21282 0.91702 1.05698 0.99167 1.17317 0.92818 0.87021 0.90052 1.19446 0.98778 1.31255 0.99173 0.90849 1.25858 0.96215 0.92890 0.98974 1.69812 1.30165 1.19351 1.22707 0.86475 0.81392 0.79784 0.79735 1.19077 1.20321 1.18915 1.20912 0.97660 0.95637 0.93123 1.21910 0.99899 1.01169 0.97066 1.22090 1.02643 0.93932 1.02182 1.21892 0.91989 1.03109 1.01832 0.91806 0.88020 0.91891 0.75930 0.90507 0.88429 0.89804 0.89734 0.89655 0.86608 0.90931 0.93446 0.91999 0.91971 0.92096 0.92314 0.90693 0.91904 0.93209 0.91288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.56 101.05 1.07 1.31 16 2 O -0.35 -3.75 7.48 -39.27 -0.29 -4.04 16 3 C 0.46 6.04 5.99 36.01 0.22 6.26 16 4 O -0.50 -7.52 15.59 -18.74 -0.29 -7.81 16 5 C 0.16 2.25 2.08 -69.08 -0.14 2.11 16 6 H 0.12 1.86 7.58 -51.93 -0.39 1.47 16 7 N -0.73 -10.97 4.07 -54.93 -0.22 -11.20 16 8 C 0.52 9.71 5.84 -10.99 -0.06 9.64 16 9 O -0.51 -11.18 13.16 5.56 0.07 -11.10 16 10 C -0.07 -1.34 5.18 -29.04 -0.15 -1.49 16 11 C -0.18 -4.27 4.43 -103.91 -0.46 -4.73 16 12 C -0.08 -1.81 9.66 -39.66 -0.38 -2.19 16 13 C -0.24 -5.54 10.05 -39.29 -0.39 -5.93 16 14 C -0.11 -2.59 10.02 -39.66 -0.40 -2.99 16 15 C -0.16 -4.24 8.68 -38.87 -0.34 -4.58 16 16 C 0.13 3.46 5.56 -106.82 -0.59 2.87 16 17 C -0.46 -12.04 8.15 -37.74 -0.31 -12.35 16 18 H 0.07 1.89 6.68 -52.48 -0.35 1.54 16 19 C 0.08 1.98 5.16 -17.34 -0.09 1.89 16 20 N -0.79 -20.63 10.97 55.55 0.61 -20.02 16 21 Si 0.90 19.19 29.59 -169.99 -5.03 14.16 16 22 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 23 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 24 H -0.26 -5.70 7.11 56.52 0.40 -5.30 16 25 C -0.07 -0.84 0.62 -154.51 -0.10 -0.94 16 26 C -0.14 -1.51 8.07 37.16 0.30 -1.21 16 27 C -0.15 -1.50 7.95 37.16 0.30 -1.21 16 28 C -0.13 -1.79 7.00 37.16 0.26 -1.53 16 29 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 30 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.48 8.13 -51.93 -0.42 0.05 16 32 H 0.40 5.54 7.79 -40.82 -0.32 5.22 16 33 H 0.08 1.25 8.05 -51.93 -0.42 0.83 16 34 H 0.10 1.91 7.04 -51.93 -0.37 1.55 16 35 H 0.08 1.67 8.06 -52.48 -0.42 1.24 16 36 H 0.08 1.73 8.06 -52.49 -0.42 1.31 16 37 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 38 H 0.12 3.18 6.22 -52.49 -0.33 2.86 16 39 H 0.28 6.66 8.30 -40.82 -0.34 6.33 16 40 H 0.05 0.49 7.22 -51.93 -0.37 0.11 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.69 7.60 -51.93 -0.39 0.29 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.07 0.71 5.32 -51.92 -0.28 0.44 16 46 H 0.06 0.99 5.77 -51.93 -0.30 0.69 16 47 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.07 1.06 7.53 -51.93 -0.39 0.67 16 LS Contribution 383.43 15.07 5.78 5.78 Total: -1.00 -30.36 383.43 -7.93 -38.29 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: -7.27 Total: 11.03 kcal Atomic # 6 Polarization: -13.80 SS G_CDS: -1.28 Total: -15.08 kcal Atomic # 7 Polarization: -31.60 SS G_CDS: 0.39 Total: -31.22 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: -0.51 Total: -22.95 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.03 Total: 14.16 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -30.36 -7.93 -38.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776933038.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.619 kcal (2) G-P(sol) polarization free energy of solvation -30.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds