Wall clock time and date at job start Tue Mar 31 2020 19:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34234 * 116.99954 * 2 1 4 4 O 1.20818 * 119.99693 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99820 * 180.02562 * 3 2 1 6 6 H 1.09004 * 109.47394 * 59.99725 * 5 3 2 7 7 N 1.46501 * 109.47014 * 180.02562 * 5 3 2 8 8 C 1.34775 * 119.99516 * 205.00202 * 7 5 3 9 9 O 1.21274 * 120.00445 * 359.97438 * 8 7 5 10 10 C 1.50699 * 119.99522 * 180.02562 * 8 7 5 11 11 C 1.50700 * 109.47057 * 179.97438 * 10 8 7 12 12 C 1.37642 * 120.12792 * 264.99577 * 11 10 8 13 13 C 1.38612 * 120.25151 * 179.74535 * 12 11 10 14 14 C 1.38656 * 120.49998 * 0.26185 * 13 12 11 15 15 C 1.37597 * 120.24937 * 0.02562 * 14 13 12 16 16 C 1.40704 * 120.13174 * 85.27102 * 11 10 8 17 17 C 1.41391 * 120.24223 * 359.97438 * 16 11 10 18 18 H 1.08007 * 119.99917 * 334.30441 * 17 16 11 19 19 C 1.39946 * 120.00125 * 154.30237 * 17 16 11 20 20 N 1.30823 * 119.99468 * 343.66622 * 19 17 16 21 21 Si 1.86796 * 120.00127 * 163.66631 * 19 17 16 22 22 H 1.48501 * 109.47217 * 60.00126 * 21 19 17 23 23 H 1.48503 * 109.47102 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.47218 * 299.99901 * 21 19 17 25 25 C 1.52997 * 109.46843 * 299.99789 * 5 3 2 26 26 C 1.53000 * 109.47211 * 300.00184 * 25 5 3 27 27 C 1.52995 * 109.47387 * 60.00419 * 25 5 3 28 28 C 1.53009 * 109.47171 * 180.02562 * 25 5 3 29 29 H 1.08996 * 109.47205 * 59.99872 * 1 2 3 30 30 H 1.09001 * 109.47431 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46896 * 299.99679 * 1 2 3 32 32 H 0.97000 * 120.00223 * 24.99475 * 7 5 3 33 33 H 1.08995 * 109.47704 * 59.99641 * 10 8 7 34 34 H 1.09007 * 109.46869 * 299.98951 * 10 8 7 35 35 H 1.08006 * 119.87061 * 0.02737 * 12 11 10 36 36 H 1.07992 * 119.75161 * 180.23125 * 13 12 11 37 37 H 1.07992 * 119.87749 * 180.02562 * 14 13 12 38 38 H 1.07996 * 120.13026 * 180.02562 * 15 14 13 39 39 H 0.97003 * 119.99997 * 180.02562 * 20 19 17 40 40 H 1.08997 * 109.47077 * 60.00109 * 26 25 5 41 41 H 1.09004 * 109.47191 * 180.02562 * 26 25 5 42 42 H 1.08996 * 109.47160 * 299.99930 * 26 25 5 43 43 H 1.08996 * 109.47750 * 59.99487 * 27 25 5 44 44 H 1.09000 * 109.47449 * 180.02562 * 27 25 5 45 45 H 1.09009 * 109.47024 * 299.99520 * 27 25 5 46 46 H 1.08999 * 109.46352 * 59.99946 * 28 25 5 47 47 H 1.08994 * 109.47060 * 179.97438 * 28 25 5 48 48 H 1.08991 * 109.47119 * 300.00243 * 28 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9557 0.7809 -0.8908 7 7 3.9817 2.6798 0.0002 8 6 5.1870 3.0263 -0.4935 9 8 5.9278 2.1751 -0.9378 10 6 5.6145 4.4713 -0.4922 11 6 6.9917 4.5883 -1.0927 12 6 8.1016 4.6014 -0.2787 13 6 9.3698 4.7036 -0.8287 14 6 9.5357 4.7990 -2.2019 15 6 8.4403 4.7937 -3.0346 16 6 7.1478 4.6902 -2.4874 17 6 6.0148 4.6830 -3.3331 18 1 5.1027 4.2031 -3.0101 19 6 6.0751 5.2979 -4.5889 20 7 7.0380 6.1414 -4.8585 21 14 4.7807 4.9141 -5.8798 22 1 3.4395 5.2865 -5.3621 23 1 5.0678 5.6882 -7.1141 24 1 4.8060 3.4620 -6.1898 25 6 4.1138 0.5811 1.2483 26 6 3.5672 1.2744 2.4979 27 6 3.6800 -0.8861 1.2482 28 6 5.6417 0.6616 1.2481 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 3.3893 3.3605 0.3558 33 1 5.6323 4.8442 0.5319 34 1 4.9101 5.0592 -1.0808 35 1 7.9840 4.5273 0.7924 36 1 10.2352 4.7094 -0.1827 37 1 10.5285 4.8777 -2.6197 38 1 8.5718 4.8677 -4.1039 39 1 7.0796 6.5678 -5.7288 40 1 2.4787 1.2174 2.4983 41 1 3.9576 0.7804 3.3877 42 1 3.8762 2.3196 2.4980 43 1 4.0693 -1.3801 0.3581 44 1 4.0697 -1.3803 2.1382 45 1 2.5914 -0.9432 1.2487 46 1 5.9503 1.7070 1.2484 47 1 6.0317 0.1678 2.1381 48 1 6.0315 0.1680 0.3580 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776933038.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:07 Heat of formation + Delta-G solvation = -126.996541 kcal Electronic energy + Delta-G solvation = -30017.592754 eV Core-core repulsion = 26036.483859 eV Total energy + Delta-G solvation = -3981.108895 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.24305 -40.76002 -39.30089 -37.94114 -37.67755 -35.48991 -34.59377 -33.33614 -31.33226 -30.14624 -28.77160 -28.22795 -27.87379 -27.36995 -26.53668 -22.82780 -22.67722 -22.18217 -21.08780 -20.11394 -19.12270 -18.76275 -18.35610 -17.83423 -17.37158 -17.18607 -16.63954 -16.37831 -16.16724 -15.55387 -15.39062 -14.92181 -14.81543 -14.61864 -14.48157 -14.36730 -14.27771 -13.74323 -13.50882 -13.36900 -13.17904 -13.05773 -12.91888 -12.85895 -12.75121 -12.59462 -12.56258 -12.46658 -12.24559 -12.12603 -11.97054 -11.76678 -11.60000 -11.44369 -11.30051 -11.19792 -11.02850 -10.74098 -10.08726 -9.20394 -9.14153 -8.59391 -6.28337 0.95960 0.99519 1.13494 1.33665 1.39971 1.43270 1.53238 1.84316 2.18561 2.36861 2.79358 3.48049 3.61040 3.78419 3.82200 4.04983 4.13633 4.29775 4.30363 4.33437 4.41758 4.46099 4.52648 4.62957 4.70710 4.73802 4.77582 4.79765 4.82631 4.91730 5.01518 5.04806 5.07557 5.11568 5.19430 5.20969 5.30858 5.36399 5.39397 5.48208 5.54466 5.56871 5.79025 6.05860 6.18293 6.24250 6.44049 6.50254 6.58024 6.76028 7.00520 7.13103 7.38083 8.36873 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011841 B = 0.004161 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2364.024344 B = 6727.855380 C = 8466.877833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.344 6.344 3 C 0.472 3.528 4 O -0.523 6.523 5 C 0.160 3.840 6 H 0.105 0.895 7 N -0.716 5.716 8 C 0.528 3.472 9 O -0.549 6.549 10 C -0.070 4.070 11 C -0.183 4.183 12 C -0.088 4.088 13 C -0.240 4.240 14 C -0.117 4.117 15 C -0.193 4.193 16 C 0.098 3.902 17 C -0.484 4.484 18 H 0.069 0.931 19 C 0.039 3.961 20 N -0.825 5.825 21 Si 0.965 3.035 22 H -0.259 1.259 23 H -0.265 1.265 24 H -0.270 1.270 25 C -0.066 4.066 26 C -0.139 4.139 27 C -0.146 4.146 28 C -0.125 4.125 29 H 0.057 0.943 30 H 0.136 0.864 31 H 0.068 0.932 32 H 0.413 0.587 33 H 0.112 0.888 34 H 0.092 0.908 35 H 0.117 0.883 36 H 0.115 0.885 37 H 0.104 0.896 38 H 0.095 0.905 39 H 0.285 0.715 40 H 0.052 0.948 41 H 0.078 0.922 42 H 0.054 0.946 43 H 0.054 0.946 44 H 0.075 0.925 45 H 0.082 0.918 46 H 0.040 0.960 47 H 0.069 0.931 48 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.334 -11.098 12.548 20.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.259 6.259 3 C 0.315 3.685 4 O -0.412 6.412 5 C 0.053 3.947 6 H 0.123 0.877 7 N -0.372 5.372 8 C 0.316 3.684 9 O -0.425 6.425 10 C -0.109 4.109 11 C -0.185 4.185 12 C -0.106 4.106 13 C -0.259 4.259 14 C -0.135 4.135 15 C -0.212 4.212 16 C 0.096 3.904 17 C -0.514 4.514 18 H 0.087 0.913 19 C -0.176 4.176 20 N -0.452 5.452 21 Si 0.787 3.213 22 H -0.183 1.183 23 H -0.189 1.189 24 H -0.195 1.195 25 C -0.067 4.067 26 C -0.196 4.196 27 C -0.204 4.204 28 C -0.182 4.182 29 H 0.076 0.924 30 H 0.154 0.846 31 H 0.087 0.913 32 H 0.251 0.749 33 H 0.130 0.870 34 H 0.110 0.890 35 H 0.135 0.865 36 H 0.133 0.867 37 H 0.122 0.878 38 H 0.113 0.887 39 H 0.096 0.904 40 H 0.071 0.929 41 H 0.097 0.903 42 H 0.074 0.926 43 H 0.073 0.927 44 H 0.094 0.906 45 H 0.101 0.899 46 H 0.059 0.941 47 H 0.087 0.913 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -11.958 -11.250 12.031 20.354 hybrid contribution -0.643 0.578 -1.061 1.369 sum -12.602 -10.672 10.970 19.825 Atomic orbital electron populations 1.23644 0.74670 1.06016 1.02679 1.86606 1.24978 1.31198 1.83148 1.23572 0.91447 0.82033 0.71482 1.90656 1.67163 1.37086 1.46316 1.20577 0.86675 0.85054 1.02425 0.87698 1.45758 1.18845 1.07690 1.64877 1.20936 0.80299 0.91697 0.75454 1.90686 1.53597 1.52528 1.45692 1.20264 0.95875 0.92071 1.02711 1.19445 0.93569 1.12589 0.92873 1.20709 0.92418 0.99157 0.98289 1.20707 0.96837 1.13980 0.94413 1.20938 0.97360 1.00746 0.94475 1.21283 0.92971 1.08350 0.98644 1.17685 0.92898 0.88072 0.91733 1.19583 0.98811 1.32448 1.00522 0.91320 1.26589 0.98205 0.92344 1.00444 1.69871 1.31730 1.20123 1.23428 0.85505 0.79065 0.79131 0.77576 1.18280 1.18916 1.19487 1.20886 0.96284 0.96888 0.92672 1.21880 1.00183 1.00751 0.96829 1.22062 1.03129 0.92411 1.02755 1.21797 0.93405 1.01477 1.01532 0.92384 0.84622 0.91301 0.74943 0.86975 0.88977 0.86476 0.86710 0.87801 0.88684 0.90392 0.92925 0.90265 0.92644 0.92709 0.90615 0.89916 0.94112 0.91256 0.93727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 10.56 113.37 1.20 1.50 16 2 O -0.34 -6.72 7.48 -51.46 -0.39 -7.11 16 3 C 0.47 11.69 5.99 71.24 0.43 12.12 16 4 O -0.52 -15.04 15.59 21.99 0.34 -14.70 16 5 C 0.16 4.28 2.08 44.24 0.09 4.37 16 6 H 0.11 3.25 7.58 -2.38 -0.02 3.23 16 7 N -0.72 -21.20 4.07 -446.11 -1.82 -23.02 16 8 C 0.53 19.73 5.84 87.66 0.51 20.24 16 9 O -0.55 -24.62 13.16 -3.01 -0.04 -24.66 16 10 C -0.07 -2.67 5.18 29.10 0.15 -2.52 16 11 C -0.18 -8.70 4.43 -19.40 -0.09 -8.79 16 12 C -0.09 -3.87 9.66 22.22 0.21 -3.66 16 13 C -0.24 -10.81 10.05 22.46 0.23 -10.59 16 14 C -0.12 -5.74 10.02 22.22 0.22 -5.52 16 15 C -0.19 -10.69 8.68 22.73 0.20 -10.49 16 16 C 0.10 5.39 5.56 -21.29 -0.12 5.27 16 17 C -0.48 -26.44 8.15 23.46 0.19 -26.25 16 18 H 0.07 3.68 6.68 -2.91 -0.02 3.66 16 19 C 0.04 2.02 5.16 85.26 0.44 2.46 16 20 N -0.83 -44.34 10.97 21.83 0.24 -44.10 16 21 Si 0.97 40.19 29.59 68.60 2.03 42.22 16 22 H -0.26 -10.35 7.11 99.48 0.71 -9.65 16 23 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 24 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 25 C -0.07 -1.45 0.62 -52.18 -0.03 -1.48 16 26 C -0.14 -2.58 8.07 71.98 0.58 -2.00 16 27 C -0.15 -2.59 7.95 71.98 0.57 -2.02 16 28 C -0.12 -3.31 7.00 71.99 0.50 -2.80 16 29 H 0.06 0.86 8.13 -2.39 -0.02 0.84 16 30 H 0.14 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.07 0.86 8.13 -2.38 -0.02 0.84 16 32 H 0.41 10.92 7.79 -92.71 -0.72 10.20 16 33 H 0.11 3.42 8.05 -2.39 -0.02 3.40 16 34 H 0.09 3.64 7.04 -2.38 -0.02 3.62 16 35 H 0.12 4.33 8.06 -2.91 -0.02 4.30 16 36 H 0.11 4.40 8.06 -2.91 -0.02 4.38 16 37 H 0.10 4.55 8.06 -2.91 -0.02 4.53 16 38 H 0.10 5.53 6.22 -2.91 -0.02 5.51 16 39 H 0.29 14.00 8.30 -92.71 -0.77 13.23 16 40 H 0.05 0.93 7.22 -2.39 -0.02 0.91 16 41 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 42 H 0.05 1.10 7.60 -2.39 -0.02 1.08 16 43 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.08 1.35 5.32 -2.38 -0.01 1.33 16 46 H 0.04 1.25 5.77 -2.39 -0.01 1.24 16 47 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 48 H 0.04 1.38 7.53 -2.39 -0.02 1.37 16 Total: -1.00 -68.05 383.43 5.91 -62.14 By element: Atomic # 1 Polarization: 39.14 SS G_CDS: 0.25 Total: 39.40 kcal Atomic # 6 Polarization: -35.46 SS G_CDS: 5.29 Total: -30.17 kcal Atomic # 7 Polarization: -65.54 SS G_CDS: -1.58 Total: -67.12 kcal Atomic # 8 Polarization: -46.38 SS G_CDS: -0.08 Total: -46.46 kcal Atomic # 14 Polarization: 40.19 SS G_CDS: 2.03 Total: 42.22 kcal Total: -68.05 5.91 -62.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776933038.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.857 kcal (2) G-P(sol) polarization free energy of solvation -68.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds