Wall clock time and date at job start Tue Mar 31 2020 19:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47179 * 2 1 4 4 C 1.53008 * 109.47036 * 184.99814 * 3 2 1 5 5 C 1.52996 * 109.46892 * 65.00297 * 3 2 1 6 6 C 1.50700 * 109.47390 * 59.99733 * 5 3 2 7 7 O 1.20821 * 119.99976 * 359.97438 * 6 5 3 8 8 O 1.34228 * 120.00237 * 179.97438 * 6 5 3 9 9 C 1.45200 * 117.00296 * 179.97438 * 8 6 5 10 10 N 1.46495 * 109.47383 * 305.00184 * 3 2 1 11 11 C 1.34772 * 119.99961 * 300.00070 * 10 3 2 12 12 O 1.21283 * 120.00083 * 359.97438 * 11 10 3 13 13 C 1.50703 * 119.99933 * 179.72637 * 11 10 3 14 14 C 1.50702 * 109.46907 * 180.27428 * 13 11 10 15 15 C 1.37643 * 120.12681 * 264.99448 * 14 13 11 16 16 C 1.38610 * 120.24818 * 179.97438 * 15 14 13 17 17 C 1.38660 * 120.50440 * 0.02562 * 16 15 14 18 18 C 1.37601 * 120.24609 * 0.02696 * 17 16 15 19 19 C 1.40698 * 120.13108 * 84.72700 * 14 13 11 20 20 C 1.41402 * 120.23915 * 359.97438 * 19 14 13 21 21 H 1.07997 * 120.00329 * 333.90785 * 20 19 14 22 22 C 1.39950 * 119.99438 * 153.91016 * 20 19 14 23 23 N 1.30815 * 120.00107 * 343.70213 * 22 20 19 24 24 Si 1.86799 * 119.99432 * 163.70696 * 22 20 19 25 25 H 1.48504 * 109.47311 * 90.00054 * 24 22 20 26 26 H 1.48501 * 109.46817 * 209.99695 * 24 22 20 27 27 H 1.48496 * 109.47394 * 329.99513 * 24 22 20 28 28 H 1.08997 * 109.47557 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47383 * 299.99890 * 1 2 3 30 30 H 1.09004 * 109.47382 * 59.99691 * 1 2 3 31 31 H 1.08998 * 109.46745 * 239.99929 * 2 1 3 32 32 H 1.09005 * 109.47000 * 120.00681 * 2 1 3 33 33 H 1.09000 * 109.46916 * 180.02562 * 4 3 2 34 34 H 1.08993 * 109.47167 * 300.00501 * 4 3 2 35 35 H 1.09001 * 109.46620 * 60.00082 * 4 3 2 36 36 H 1.09000 * 109.47263 * 179.97438 * 5 3 2 37 37 H 1.09000 * 109.47377 * 299.99786 * 5 3 2 38 38 H 1.09003 * 109.47285 * 300.00048 * 9 8 6 39 39 H 1.09006 * 109.46904 * 60.00230 * 9 8 6 40 40 H 1.09000 * 109.47619 * 179.97438 * 9 8 6 41 41 H 0.97003 * 120.00194 * 120.00167 * 10 3 2 42 42 H 1.08997 * 109.47220 * 300.26927 * 13 11 10 43 43 H 1.08995 * 109.47568 * 60.27385 * 13 11 10 44 44 H 1.07997 * 119.87385 * 0.02562 * 15 14 13 45 45 H 1.08002 * 119.74938 * 180.02562 * 16 15 14 46 46 H 1.07996 * 119.87995 * 180.02562 * 17 16 15 47 47 H 1.08001 * 120.12928 * 179.97438 * 18 17 16 48 48 H 0.97004 * 120.00061 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5649 1.4443 -0.1257 5 6 1.6353 2.1264 1.3074 6 6 2.2361 1.3811 2.4712 7 8 2.9177 0.4030 2.2752 8 8 2.0141 1.8039 3.7257 9 6 2.6238 1.0371 4.7974 10 7 1.4559 2.1670 -1.1313 11 6 1.6792 1.7427 -2.3909 12 8 2.3641 0.7614 -2.5878 13 6 1.0732 2.4845 -3.5544 14 6 1.4674 1.8075 -4.8418 15 6 2.5593 2.2540 -5.5510 16 6 2.9244 1.6329 -6.7351 17 6 2.1959 0.5571 -7.2193 18 6 1.1000 0.0945 -6.5276 19 6 0.7240 0.7131 -5.3207 20 6 -0.3959 0.2418 -4.5975 21 1 -0.4543 0.3979 -3.5305 22 6 -1.4286 -0.4269 -5.2645 23 7 -1.5280 -0.3438 -6.5663 24 14 -2.6650 -1.4381 -4.2959 25 1 -3.8103 -0.5775 -3.9048 26 1 -3.1536 -2.5604 -5.1367 27 1 -2.0141 -1.9803 -3.0763 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5140 0.8900 33 1 3.9282 2.4719 -0.1252 34 1 3.9994 0.9052 0.7160 35 1 3.8532 0.9569 -1.0571 36 1 1.9990 3.1539 1.3076 37 1 0.5490 2.1252 1.3970 38 1 2.2565 0.0114 4.7648 39 1 3.7070 1.0393 4.6750 40 1 2.3661 1.4854 5.7570 41 1 0.9084 2.9521 -0.9739 42 1 -0.0127 2.4825 -3.4607 43 1 1.4357 3.5124 -3.5586 44 1 3.1342 3.0909 -5.1829 45 1 3.7829 1.9896 -7.2848 46 1 2.4896 0.0804 -8.1428 47 1 0.5337 -0.7434 -6.9067 48 1 -2.2440 -0.8070 -7.0286 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776983787.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:29 Heat of formation + Delta-G solvation = -125.224973 kcal Electronic energy + Delta-G solvation = -29810.841186 eV Core-core repulsion = 25829.809111 eV Total energy + Delta-G solvation = -3981.032074 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.01765 -40.85257 -39.35163 -38.08464 -36.86812 -35.47021 -33.77815 -32.83024 -31.71934 -31.30139 -29.98771 -28.34083 -27.89669 -26.81808 -24.55413 -23.30853 -22.78455 -22.01980 -20.90035 -20.31926 -19.04104 -18.65520 -17.93548 -17.61519 -17.25102 -17.14779 -16.55913 -16.34337 -16.08831 -15.71464 -15.37888 -15.22589 -14.85938 -14.52934 -14.43694 -14.34320 -14.20924 -13.84270 -13.48219 -13.34605 -13.29580 -12.95109 -12.87501 -12.85703 -12.73646 -12.71453 -12.55707 -12.45206 -12.24028 -12.12756 -11.82880 -11.75520 -11.49554 -11.29592 -11.25814 -11.16636 -10.99517 -10.32456 -9.89421 -9.19374 -9.12106 -8.57033 -6.25283 1.01685 1.15804 1.17902 1.35762 1.46555 1.54319 1.62663 1.98960 2.20555 2.57331 2.82204 3.43703 3.81438 3.83231 3.89337 4.11638 4.22242 4.32557 4.35788 4.38961 4.44539 4.48600 4.51139 4.55616 4.66223 4.71276 4.73610 4.75394 4.81167 4.86415 4.89057 4.98797 5.10667 5.15744 5.22792 5.31481 5.36736 5.39985 5.42540 5.54337 5.58337 5.77348 5.81630 6.07347 6.20932 6.24470 6.45324 6.74833 6.76934 6.86874 7.02961 7.15363 7.62680 8.39386 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013897 B = 0.003641 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.312102 B = 7688.260067 C = 9156.462305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.144 4.144 3 C 0.197 3.803 4 C -0.167 4.167 5 C -0.113 4.113 6 C 0.468 3.532 7 O -0.523 6.523 8 O -0.360 6.360 9 C 0.028 3.972 10 N -0.715 5.715 11 C 0.522 3.478 12 O -0.560 6.560 13 C -0.071 4.071 14 C -0.182 4.182 15 C -0.092 4.092 16 C -0.245 4.245 17 C -0.120 4.120 18 C -0.196 4.196 19 C 0.097 3.903 20 C -0.476 4.476 21 H 0.074 0.926 22 C 0.037 3.963 23 N -0.828 5.828 24 Si 0.965 3.035 25 H -0.252 1.252 26 H -0.272 1.272 27 H -0.268 1.268 28 H 0.040 0.960 29 H 0.078 0.922 30 H 0.045 0.955 31 H 0.042 0.958 32 H 0.083 0.917 33 H 0.065 0.935 34 H 0.077 0.923 35 H 0.043 0.957 36 H 0.145 0.855 37 H 0.138 0.862 38 H 0.059 0.941 39 H 0.061 0.939 40 H 0.131 0.869 41 H 0.416 0.584 42 H 0.097 0.903 43 H 0.112 0.888 44 H 0.116 0.884 45 H 0.112 0.888 46 H 0.102 0.898 47 H 0.094 0.906 48 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.369 8.678 20.682 22.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.182 4.182 3 C 0.111 3.889 4 C -0.225 4.225 5 C -0.151 4.151 6 C 0.312 3.688 7 O -0.412 6.412 8 O -0.276 6.276 9 C -0.065 4.065 10 N -0.370 5.370 11 C 0.310 3.690 12 O -0.437 6.437 13 C -0.110 4.110 14 C -0.184 4.184 15 C -0.110 4.110 16 C -0.264 4.264 17 C -0.138 4.138 18 C -0.215 4.215 19 C 0.094 3.906 20 C -0.506 4.506 21 H 0.092 0.908 22 C -0.177 4.177 23 N -0.455 5.455 24 Si 0.787 3.213 25 H -0.177 1.177 26 H -0.196 1.196 27 H -0.192 1.192 28 H 0.059 0.941 29 H 0.097 0.903 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.101 0.899 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.062 0.938 36 H 0.162 0.838 37 H 0.156 0.844 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.149 0.851 41 H 0.253 0.747 42 H 0.115 0.885 43 H 0.130 0.870 44 H 0.134 0.866 45 H 0.131 0.869 46 H 0.120 0.880 47 H 0.112 0.888 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.915 7.613 20.323 21.787 hybrid contribution -0.506 -0.922 -0.250 1.081 sum 1.409 6.692 20.073 21.206 Atomic orbital electron populations 1.21746 0.95161 1.01289 1.02051 1.22084 0.96481 0.96975 1.02652 1.19827 0.93157 0.91198 0.84708 1.22346 0.95018 1.02235 1.02935 1.21621 1.04891 1.01506 0.87058 1.23632 0.77667 0.82809 0.84711 1.90620 1.37634 1.27501 1.85480 1.86488 1.69489 1.55779 1.15830 1.23525 0.98361 0.96417 0.88175 1.45854 1.54349 1.32563 1.04198 1.20941 0.79614 0.84169 0.84296 1.90645 1.39765 1.27735 1.85544 1.20300 1.02091 0.99115 0.89507 1.19550 1.00735 0.99368 0.98764 1.20733 0.95894 0.99281 0.95087 1.20702 1.03599 1.01949 1.00113 1.20929 0.96115 0.97787 0.98970 1.21303 0.98470 1.02384 0.99357 1.17731 0.91765 0.89495 0.91576 1.19601 1.02488 1.33111 0.95385 0.90767 1.26631 1.00109 0.95396 0.95611 1.69887 1.30354 1.34973 1.10243 0.85458 0.78285 0.78611 0.78993 1.17652 1.19640 1.19214 0.94102 0.90311 0.93573 0.93960 0.89868 0.91602 0.90477 0.93833 0.83755 0.84401 0.92246 0.92038 0.85082 0.74698 0.88475 0.86973 0.86574 0.86945 0.88010 0.88751 0.90522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.05 9.45 71.98 0.68 -3.37 16 2 C -0.14 -4.49 4.44 30.59 0.14 -4.35 16 3 C 0.20 4.89 0.49 3.60 0.00 4.89 16 4 C -0.17 -4.77 8.10 71.98 0.58 -4.19 16 5 C -0.11 -1.72 4.75 29.85 0.14 -1.58 16 6 C 0.47 8.98 7.34 71.24 0.52 9.50 16 7 O -0.52 -13.55 11.11 21.98 0.24 -13.31 16 8 O -0.36 -5.67 10.57 -51.39 -0.54 -6.21 16 9 C 0.03 0.33 10.56 113.37 1.20 1.52 16 10 N -0.71 -17.84 4.18 -422.93 -1.77 -19.61 16 11 C 0.52 18.94 6.64 87.66 0.58 19.52 16 12 O -0.56 -26.21 12.30 -3.04 -0.04 -26.25 16 13 C -0.07 -2.58 5.18 29.10 0.15 -2.43 16 14 C -0.18 -8.69 4.43 -19.40 -0.09 -8.78 16 15 C -0.09 -4.15 9.66 22.22 0.21 -3.93 16 16 C -0.24 -11.34 10.05 22.46 0.23 -11.11 16 17 C -0.12 -6.04 10.02 22.22 0.22 -5.81 16 18 C -0.20 -11.01 8.69 22.73 0.20 -10.81 16 19 C 0.10 5.31 5.56 -21.29 -0.12 5.19 16 20 C -0.48 -25.60 8.14 23.46 0.19 -25.41 16 21 H 0.07 3.85 6.67 -2.91 -0.02 3.83 16 22 C 0.04 1.89 5.16 85.26 0.44 2.33 16 23 N -0.83 -44.41 10.95 21.83 0.24 -44.17 16 24 Si 0.96 39.47 29.59 68.60 2.03 41.50 16 25 H -0.25 -9.52 7.11 99.48 0.71 -8.82 16 26 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 27 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 28 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.08 1.58 6.57 -2.38 -0.02 1.57 16 30 H 0.05 1.42 7.29 -2.39 -0.02 1.40 16 31 H 0.04 1.74 6.32 -2.39 -0.02 1.72 16 32 H 0.08 2.60 5.42 -2.38 -0.01 2.58 16 33 H 0.07 1.56 8.14 -2.39 -0.02 1.55 16 34 H 0.08 2.24 5.52 -2.39 -0.01 2.23 16 35 H 0.04 1.60 6.17 -2.39 -0.01 1.59 16 36 H 0.14 1.28 8.14 -2.39 -0.02 1.27 16 37 H 0.14 1.48 6.56 -2.39 -0.02 1.47 16 38 H 0.06 0.75 8.13 -2.39 -0.02 0.73 16 39 H 0.06 0.74 8.13 -2.38 -0.02 0.72 16 40 H 0.13 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.42 6.76 8.47 -92.71 -0.79 5.98 16 42 H 0.10 3.52 7.08 -2.39 -0.02 3.50 16 43 H 0.11 3.19 8.05 -2.39 -0.02 3.17 16 44 H 0.12 4.40 8.06 -2.91 -0.02 4.37 16 45 H 0.11 4.48 8.06 -2.91 -0.02 4.46 16 46 H 0.10 4.60 8.06 -2.91 -0.02 4.58 16 47 H 0.09 5.58 6.20 -2.91 -0.02 5.56 16 48 H 0.28 13.91 8.30 -92.70 -0.77 13.14 16 Total: -1.00 -74.62 380.33 5.65 -68.97 By element: Atomic # 1 Polarization: 37.70 SS G_CDS: 0.20 Total: 37.90 kcal Atomic # 6 Polarization: -44.11 SS G_CDS: 5.28 Total: -38.82 kcal Atomic # 7 Polarization: -62.25 SS G_CDS: -1.53 Total: -63.78 kcal Atomic # 8 Polarization: -45.43 SS G_CDS: -0.34 Total: -45.77 kcal Atomic # 14 Polarization: 39.47 SS G_CDS: 2.03 Total: 41.50 kcal Total: -74.62 5.65 -68.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776983787.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.254 kcal (2) G-P(sol) polarization free energy of solvation -74.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds