Wall clock time and date at job start Tue Mar 31 2020 19:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34222 * 117.00277 * 2 1 4 4 O 1.20835 * 119.99886 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00546 * 179.97438 * 3 2 1 6 6 C 1.53001 * 109.47399 * 180.02562 * 5 3 2 7 7 C 1.52996 * 109.47010 * 180.02562 * 6 5 3 8 8 C 1.53002 * 109.47355 * 59.99985 * 7 6 5 9 9 C 1.52997 * 109.47290 * 299.99782 * 7 6 5 10 10 N 1.46507 * 109.47103 * 179.97438 * 7 6 5 11 11 C 1.34773 * 120.00266 * 180.02562 * 10 7 6 12 12 O 1.21282 * 119.99503 * 359.97438 * 11 10 7 13 13 C 1.50694 * 120.00092 * 180.02562 * 11 10 7 14 14 C 1.50707 * 109.47262 * 179.97438 * 13 11 10 15 15 C 1.37643 * 120.12639 * 265.30991 * 14 13 11 16 16 C 1.38615 * 120.24281 * 180.31829 * 15 14 13 17 17 C 1.38658 * 120.50051 * 359.66907 * 16 15 14 18 18 C 1.37593 * 120.25264 * 0.02562 * 17 16 15 19 19 C 1.40688 * 120.12508 * 84.99750 * 14 13 11 20 20 C 1.41401 * 120.24844 * 359.97438 * 19 14 13 21 21 H 1.07999 * 119.99289 * 334.28466 * 20 19 14 22 22 C 1.39937 * 120.00394 * 154.28925 * 20 19 14 23 23 N 1.30829 * 120.00181 * 334.60180 * 22 20 19 24 24 Si 1.86801 * 120.00083 * 154.60226 * 22 20 19 25 25 H 1.48505 * 109.47160 * 179.97438 * 24 22 20 26 26 H 1.48495 * 109.47100 * 300.00105 * 24 22 20 27 27 H 1.48502 * 109.47051 * 60.00179 * 24 22 20 28 28 H 1.08996 * 109.47529 * 299.99767 * 1 2 3 29 29 H 1.08992 * 109.47152 * 60.00353 * 1 2 3 30 30 H 1.09007 * 109.47376 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46996 * 60.00138 * 5 3 2 32 32 H 1.08998 * 109.46932 * 299.99856 * 5 3 2 33 33 H 1.08992 * 109.47153 * 59.99791 * 6 5 3 34 34 H 1.09003 * 109.46640 * 300.00213 * 6 5 3 35 35 H 1.08995 * 109.47176 * 179.97438 * 8 7 6 36 36 H 1.08999 * 109.46822 * 300.00220 * 8 7 6 37 37 H 1.09003 * 109.47082 * 59.99332 * 8 7 6 38 38 H 1.09003 * 109.46889 * 299.99900 * 9 7 6 39 39 H 1.08997 * 109.47131 * 60.00262 * 9 7 6 40 40 H 1.09004 * 109.47115 * 180.02562 * 9 7 6 41 41 H 0.97000 * 119.99705 * 0.02562 * 10 7 6 42 42 H 1.09001 * 109.46892 * 59.99768 * 13 11 10 43 43 H 1.08991 * 109.47294 * 299.99778 * 13 11 10 44 44 H 1.07998 * 119.87840 * 0.02562 * 15 14 13 45 45 H 1.07996 * 119.74749 * 179.68975 * 16 15 14 46 46 H 1.08000 * 119.87393 * 180.02562 * 17 16 15 47 47 H 1.07996 * 120.12941 * 180.02562 * 18 17 16 48 48 H 0.96998 * 119.99709 * 354.17607 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0001 2.7421 0.0011 7 6 5.5280 2.8221 0.0011 8 6 6.0750 2.1290 -1.2485 9 6 6.0751 2.1281 1.2500 10 7 5.9434 4.2270 0.0009 11 6 7.2537 4.5424 0.0003 12 8 8.0890 3.6630 0.0004 13 6 7.6810 5.9875 0.0008 14 6 9.1860 6.0664 0.0006 15 6 9.8709 6.1994 1.1871 16 6 11.2548 6.2788 1.1892 17 6 11.9650 6.2186 -0.0002 18 6 11.3014 6.0796 -1.1975 19 6 9.8965 5.9978 -1.2117 20 6 9.2039 5.8541 -2.4361 21 1 8.2274 5.3930 -2.4531 22 6 9.7837 6.3091 -3.6256 23 7 10.6721 7.2691 -3.5950 24 14 9.2894 5.5458 -5.2573 25 1 10.0417 6.2000 -6.3580 26 1 9.6004 4.0939 -5.2391 27 1 7.8325 5.7373 -5.4722 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 3.9564 0.7806 -0.8892 32 1 3.9556 0.7809 0.8908 33 1 3.6100 3.2359 0.8910 34 1 3.6106 3.2363 -0.8889 35 1 7.1634 2.1864 -1.2487 36 1 5.7659 1.0837 -1.2488 37 1 5.6852 2.6234 -2.1383 38 1 5.6854 2.6220 2.1402 39 1 5.7661 1.0829 1.2497 40 1 7.1636 2.1856 1.2502 41 1 5.2753 4.9303 0.0013 42 1 7.2917 6.4811 0.8912 43 1 7.2908 6.4820 -0.8887 44 1 9.3279 6.2467 2.1194 45 1 11.7838 6.3881 2.1244 46 1 13.0431 6.2811 0.0133 47 1 11.8566 6.0325 -2.1226 48 1 10.8670 7.7230 -2.7602 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777397168.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:35 Heat of formation + Delta-G solvation = -124.052425 kcal Electronic energy + Delta-G solvation = -28818.401599 eV Core-core repulsion = 24837.420370 eV Total energy + Delta-G solvation = -3980.981229 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.83763 -39.76822 -37.90142 -37.02473 -36.28765 -33.80719 -32.84840 -31.80132 -30.18422 -29.16615 -28.08874 -27.20078 -26.72622 -25.32391 -24.78409 -21.75294 -20.89572 -20.56996 -19.41073 -19.16142 -18.11051 -17.66394 -16.98965 -16.97138 -16.38305 -15.45362 -15.05203 -14.95445 -14.80883 -14.15060 -14.08105 -13.93986 -13.74037 -13.41219 -13.22313 -13.14585 -12.84740 -12.70292 -12.33419 -12.27066 -12.00508 -11.88142 -11.66834 -11.63161 -11.30247 -11.21907 -11.17874 -11.12554 -10.92661 -10.80496 -10.77529 -10.71204 -10.43018 -10.36266 -9.60593 -9.33719 -8.95677 -8.91108 -8.68902 -7.50932 -7.46097 -7.08004 -4.37477 1.89944 2.36361 2.79921 2.89285 3.17834 3.31466 3.35656 3.39520 3.59742 4.05372 4.34013 4.63009 4.64696 4.68972 4.73991 4.81834 4.88848 5.09510 5.14532 5.17517 5.21390 5.44585 5.68476 5.72528 5.74969 5.76827 5.85058 5.94638 6.00272 6.05623 6.06942 6.15376 6.21751 6.37613 6.40740 6.47738 6.57829 6.73468 6.92168 7.04656 7.25555 7.42375 7.46735 7.72456 7.87241 7.90672 7.98680 8.02436 8.25698 8.39447 8.83434 8.91023 8.97433 10.11359 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014360 B = 0.002868 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.356680 B = 9760.591489 C =11117.686729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.362 6.362 3 C 0.461 3.539 4 O -0.507 6.507 5 C -0.114 4.114 6 C -0.110 4.110 7 C 0.177 3.823 8 C -0.170 4.170 9 C -0.167 4.167 10 N -0.738 5.738 11 C 0.519 3.481 12 O -0.516 6.516 13 C -0.072 4.072 14 C -0.182 4.182 15 C -0.069 4.069 16 C -0.254 4.254 17 C -0.087 4.087 18 C -0.216 4.216 19 C 0.116 3.884 20 C -0.515 4.515 21 H 0.072 0.928 22 C 0.040 3.960 23 N -0.800 5.800 24 Si 1.059 2.941 25 H -0.275 1.275 26 H -0.275 1.275 27 H -0.277 1.277 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.101 0.899 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.059 0.941 37 H 0.055 0.945 38 H 0.052 0.948 39 H 0.059 0.941 40 H 0.083 0.917 41 H 0.395 0.605 42 H 0.074 0.926 43 H 0.094 0.906 44 H 0.085 0.915 45 H 0.086 0.914 46 H 0.087 0.913 47 H 0.104 0.896 48 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.821 -10.609 5.261 20.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.278 6.278 3 C 0.304 3.696 4 O -0.395 6.395 5 C -0.152 4.152 6 C -0.148 4.148 7 C 0.091 3.909 8 C -0.228 4.228 9 C -0.225 4.225 10 N -0.393 5.393 11 C 0.307 3.693 12 O -0.390 6.390 13 C -0.111 4.111 14 C -0.184 4.184 15 C -0.087 4.087 16 C -0.273 4.273 17 C -0.105 4.105 18 C -0.236 4.236 19 C 0.114 3.886 20 C -0.543 4.543 21 H 0.090 0.910 22 C -0.181 4.181 23 N -0.423 5.423 24 Si 0.883 3.117 25 H -0.199 1.199 26 H -0.200 1.200 27 H -0.203 1.203 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.119 0.881 31 H 0.131 0.869 32 H 0.130 0.870 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.105 0.895 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.102 0.898 41 H 0.229 0.771 42 H 0.092 0.908 43 H 0.112 0.888 44 H 0.103 0.897 45 H 0.105 0.895 46 H 0.105 0.895 47 H 0.122 0.878 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -16.061 -10.882 3.622 19.735 hybrid contribution -0.916 0.319 1.730 1.984 sum -16.977 -10.562 5.352 20.698 Atomic orbital electron populations 1.23264 0.76347 1.03687 1.02589 1.86514 1.23478 1.33661 1.84176 1.23922 0.92355 0.81242 0.72098 1.90683 1.67344 1.36323 1.45141 1.21531 0.86964 1.00005 1.06685 1.21649 0.94514 0.94336 1.04273 1.20124 0.92008 0.82580 0.96157 1.22332 1.04711 0.99297 0.96435 1.22310 1.04402 0.99438 0.96362 1.46236 1.07908 1.06851 1.78264 1.21088 0.81110 0.92454 0.74627 1.90611 1.51347 1.49905 1.47103 1.20261 0.96140 0.92040 1.02699 1.19004 0.91462 1.14262 0.93687 1.20348 0.93995 0.98932 0.95462 1.20256 0.93850 1.17010 0.96184 1.20594 0.97239 0.99368 0.93306 1.21134 0.94472 1.11421 0.96533 1.17387 0.91341 0.87792 0.92119 1.20425 1.05227 1.36348 0.92327 0.90959 1.26909 0.92754 0.94024 1.04463 1.70450 1.24467 1.13873 1.33517 0.83725 0.76880 0.76962 0.74113 1.19935 1.20039 1.20264 0.91899 0.91865 0.88098 0.86885 0.87002 0.90419 0.90270 0.89524 0.92263 0.92582 0.92889 0.92176 0.89783 0.77139 0.90784 0.88767 0.89691 0.89538 0.89470 0.87818 0.88742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.56 101.05 1.07 1.29 16 2 O -0.36 -3.24 10.56 -39.24 -0.41 -3.66 16 3 C 0.46 4.59 7.96 36.00 0.29 4.88 16 4 O -0.51 -6.45 15.73 -18.76 -0.30 -6.75 16 5 C -0.11 -0.93 5.11 -27.88 -0.14 -1.08 16 6 C -0.11 -1.07 3.67 -26.73 -0.10 -1.17 16 7 C 0.18 2.17 0.83 -131.82 -0.11 2.06 16 8 C -0.17 -2.27 8.05 37.16 0.30 -1.97 16 9 C -0.17 -2.05 8.05 37.16 0.30 -1.75 16 10 N -0.74 -10.36 5.11 -47.61 -0.24 -10.60 16 11 C 0.52 9.68 6.88 -10.99 -0.08 9.60 16 12 O -0.52 -11.52 12.24 5.56 0.07 -11.46 16 13 C -0.07 -1.39 5.18 -29.03 -0.15 -1.54 16 14 C -0.18 -4.33 4.43 -103.91 -0.46 -4.79 16 15 C -0.07 -1.58 9.66 -39.66 -0.38 -1.96 16 16 C -0.25 -5.86 10.05 -39.29 -0.39 -6.25 16 17 C -0.09 -2.09 10.02 -39.66 -0.40 -2.48 16 18 C -0.22 -5.70 7.95 -38.87 -0.31 -6.01 16 19 C 0.12 3.07 5.30 -106.82 -0.57 2.50 16 20 C -0.52 -13.45 8.08 -37.74 -0.30 -13.76 16 21 H 0.07 1.85 6.73 -52.49 -0.35 1.50 16 22 C 0.04 1.02 4.94 -17.34 -0.09 0.93 16 23 N -0.80 -21.23 12.31 55.55 0.68 -20.55 16 24 Si 1.06 21.97 30.00 -169.99 -5.10 16.87 16 25 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 26 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 27 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 28 H 0.06 0.40 8.13 -51.93 -0.42 -0.02 16 29 H 0.06 0.41 8.13 -51.93 -0.42 -0.01 16 30 H 0.10 0.37 8.14 -51.92 -0.42 -0.05 16 31 H 0.11 0.81 6.43 -51.93 -0.33 0.47 16 32 H 0.11 0.76 6.43 -51.93 -0.33 0.42 16 33 H 0.08 0.76 8.10 -51.93 -0.42 0.34 16 34 H 0.08 0.82 8.10 -51.93 -0.42 0.39 16 35 H 0.09 1.50 6.16 -51.93 -0.32 1.18 16 36 H 0.06 0.62 6.43 -51.93 -0.33 0.28 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.58 6.43 -51.93 -0.33 0.25 16 40 H 0.08 1.34 6.17 -51.93 -0.32 1.02 16 41 H 0.40 4.53 8.47 -40.82 -0.35 4.19 16 42 H 0.07 1.21 8.05 -51.93 -0.42 0.79 16 43 H 0.09 1.82 7.06 -51.93 -0.37 1.46 16 44 H 0.08 1.71 8.06 -52.49 -0.42 1.29 16 45 H 0.09 1.78 8.06 -52.49 -0.42 1.35 16 46 H 0.09 1.88 8.06 -52.49 -0.42 1.45 16 47 H 0.10 2.81 6.49 -52.49 -0.34 2.47 16 48 H 0.30 8.14 6.68 -40.82 -0.27 7.87 16 LS Contribution 386.60 15.07 5.83 5.83 Total: -1.00 -32.03 386.60 -8.09 -40.12 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: -7.09 Total: 11.69 kcal Atomic # 6 Polarization: -19.97 SS G_CDS: -1.53 Total: -21.50 kcal Atomic # 7 Polarization: -31.59 SS G_CDS: 0.44 Total: -31.15 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: -0.64 Total: -21.86 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.10 Total: 16.87 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.03 -8.09 -40.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777397168.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.927 kcal (2) G-P(sol) polarization free energy of solvation -32.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds